Clone Sequence Records
BS10128.3prime Sequence
926 bp (834 high quality bases) assembled on 2006-04-19
> BS10128.3prime
ATGGTCTAGAAAGCTTCTACCAAAGTCGGCACGTTTTGGCGCCAGGACGC
ATGCCGCTGCCCACGGAGCAGTTGTAGGCGTGGAAGAAGTCCTCGCTGTT
GGACAAAACTCCCAGGACACGAAATTGGTCGAAGGTGTGCACATCGCTAA
GACCTTTCCAGTAGTGCTCCTCCTCGTAATGGGAGCAAAATAGCTGGGCA
AATCCCAGGAAGAACAACTGTTCCGGCGTGAGATCGAGACCCGGCATGGC
GTCGCTTATCCTCTCCTGCCCAGGATGCTCCAGCAGTTGCTGCCTGTGAC
TGCGATAGGCCGTCAATGCTTGTCTTAATCCGCTATTGTCTGCGATATTC
TCGTCCAGTGTAGTTTTTCCGTTGACACGCCTGCTGATCTCCGGTACCTG
GTACTTGCCATAGTAGTCCATGTAGCACTCGGCGCGATCCTCTAATGCCT
GTTGCGAAATTTCCGACAACAAGGACTCCATGTGACCATTGCCATCGAAA
TAGGAGCTGGTCGTATCGAAGCCGTGGATGAGTTCATGACCAACGATAAA
ACCCAATGTGCCGAATTTCAGGGAAATCGGCAGGTGGCGTTGGTATATCG
GTGGTTCCACCACGCCAGCCATCACATTAATGGAGTTGTCCGGAGTGTAG
TAGCCCGCTCCAACCTGCAATCCTGTCAGGATCTTCTGTGGCTTGGTGTC
ATTGGTCAGCTCCTGAAAATGCCGACTGCTAAATCGATTGATTTGTACAA
CTAGGTGCTGCAAATTAATGTTGGTCTCCGCATAGCGATCCTCGATGACT
TTCAGACTGTTGATTTCCCGGATTATTCGATCCGAAAGTGCATCATCTTG
GAACGAACCAATGCGTGGCTGTATTCTGGACTCCTTAAGCAGTGCCCTCG
CCCTGCTCTCCGCATCCAGCCAATCG
BS10128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-PA | 2109 | CG8358-RA | 1200..2109 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-RA | 2197 | CG8358-RA | 1229..2139 | 926..16 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9676810..9677720 | 926..16 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:42:53 has no hits.
BS10128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:11 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-PA | 1200..2109 | 17..926 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:45 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-PA | 1200..2109 | 17..926 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:06 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 1229..2139 | 16..926 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:12 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 1229..2139 | 16..926 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:12 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9676810..9677720 | 16..926 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:06 Download gff for
BS10128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5502532..5503442 | 16..926 | 100 | | Minus |
BS10128.5prime Sequence
884 bp (783 high quality bases) assembled on 2006-04-19
> BS10128.5prime
GAAGTTATCAGTCGACATGTTTCATGAATCACTGAAGCTGATCTCCCTGA
TGCTGCTGTGGGTCATTGTGGCTGCGGTTCTGACGGATTGCGAGGCCAGG
AGCCTTGTGGACAGGTCCGAAAATTCCGATAGCAATGGTAGCTCGACCAA
TAGATCCGCGGCAGAGTACCAACTGCAGGAATACGCGGAATTCATGAAAT
CCTATATGAACCAAAGTGTAGAGCCCTGCGAGAATTTCTACGAGTATGCC
TGTGGAAATTATCGGAACGTAAAGCCGGATCGGTACTCACCGGGCAGTAG
AAGCAACCTGGGCGACGTGACTTACACACTGATCGACATCACGGAGCAAC
TGCTGGGCAGAATGGATCTGGCGGAGGCTCTAAACGTATCCAGCGAACTG
GCGGTGGCCCAGCGATTCTACAACGCTTGTCTGGGAGCAAATCTCCATCC
TTTCAATGCGGCGGATCCCGCTTACTTGAGTCTAATTCGATCGATTGGAG
GATTTCCCGCTGTGGATGGAGACGCCTGGAAAGCCTCAAACTTTAACTGG
ATCAACATGAGTGCTCATCTGGCCAACTATGGCGCCAACGGTCTGATCCG
CGAAACTCTCCAGTTAAGGTATCCCTTTGAGCCCTACACCAAACTGCCCG
AACTGGGCTTCGATCACATCATCGTACATGAGGAAAACATTTCCAGAAAT
ACCACACGCGCCTTTCGCCTGAACGAAGAGCGAATGCACGGATATCTGAG
GGCGTTCGGCTTGCCGGAGGACAGGATTAGGGAGGCCATCGCTGGGGTCT
TTGCCTTCTGGCGGGACGCACTCGAGATCCCGCCCCAGTGCGAAGTGTTT
GATCCCCTACGAATTAAGCGAGTGTTTCCCCAAT
BS10128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-PA | 2109 | CG8358-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-RA | 2197 | CG8358-RA | 30..897 | 17..884 | 4295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9675552..9676419 | 17..884 | 4295 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:58:50 has no hits.
BS10128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:12 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:47 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:24 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 30..897 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:36 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 30..897 | 17..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:36 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9675552..9676419 | 17..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:24 Download gff for
BS10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5501274..5502141 | 17..884 | 99 | | Plus |
BS10128.complete Sequence
2141 bp assembled on 2007-11-30
GenBank Submission: FJ636568
> BS10128.complete
GAAGTTATCAGTCGACATGTTTCATGAATCACTGAAGCTGATCTCCCTGA
TGCTGCTGTGGGTCATTGTGGCTGCGGTTCTGACGGATTGCGAGGCCAGG
AGCCTTGTGGACAGGTCCGAAAATTCCGATAGCAATGGTAGCTCGACCAA
TAGATCCGCGGCAGAGTACCAACTGCAGGAATACGCGGAATTCATGAAAT
CCTATATGAACCAAAGTGTAGAGCCCTGCGAGAATTTCTACGAGTATGCC
TGTGGAAATTATCGGAACGTAAAGCCGGATCGGTACTCACCGGGCAGTAG
AAGCAACCTGGGCGACGTGACTTACACACTGATCGACATCACGGAGCAAC
TGCTGGGCAGAATGGATCTGGCGGAGGCTCTAAACGTATCCAGCGAACTG
GCGGTGGCCCAGCGATTCTACAACGCTTGTCTGGGAGCAAATCTCCATCC
TTTCAATGCGGCGGATCCCGCTTACTTGAGTCTAATTCGATCGATTGGAG
GATTTCCCGCTGTGGATGGAGACGCCTGGAAAGCCTCAAACTTTAACTGG
ATCAACATGAGTGCTCATCTGGCCAACTATGGCGCCAACGGTCTGATCCG
CGAAACTCTCCAGTTAAGGTATCCCTTTGAGCCCTACACCAAACTGCCCG
AACTGGGCTTCGATCACATCATCGTACATGAGGAAAACATTTCCAGAAAT
ACCACACGCGCCTTTCGCCTGAACGAAGAGCGAATGCACGGATATCTGAG
GGCGTTCGGCTTGCCGGAGGACAGGATTAGGGAGGCCATCGCTGGGGTCT
TTGCCTTCTGGCGGGACGCACTCGAGATCCCGCCCCAGTGCGAAGTGTTT
GATCCCTACCGAATTAAGCGAGTGTTTCCCCAATCGGAGTACTACTATAA
CATCTCGTGGAGTGGACTCCACTCCACTAACAAATTATTCTGCGACTTTT
ACTACGTTGAACTGGACAAAGTATGCGCCCGACATCGCAAGGCTGTGGCC
AACTACCTGGCCATGAAGCTGCTCTATAGATTCGATCCCAAACTGAAGGC
GCCCAGGTACCAAAGGAACTACTGTTCGGTTACGCTTTATCAATCCATGC
GGTTTCTGTTCAACAAACTCTACATGGCTAACAACTTCAGTGAGGCGAAG
AGGCTGGAGATGTCGGAAATGGTGCGGGAACTGCGAAAGAGTCTGCGAAA
GGCGCTGGAGGATGCCGATTGGCTGGATGCGGAGAGCAGGGCGAGGGCAC
TGCTTAAGGAGTCCAGAATACAGCCACGCATTGGTTCGTTCCAAGATGAT
GCACTTTCGGATCGAATAATCCGGGAAATCAACAGTCTGAAAGTCATCGA
GGATCGCTATGCGGAGACCAACATTAATTTGCAGCACCTAGTTGTACAAA
TCAATCGATTTAGCAGTCGGCATTTTCAGGAGCTGACCAATGACACCAAG
CCACAGAAGATCCTGACAGGATTGCAGGTTGGAGCGGGCTACTACACTCC
GGACAACTCCATTAATGTGATGGCTGGCGTGGTGGAACCACCGATATACC
AACGCCACCTGCCGATTTCCCTGAAATTCGGCACATTGGGTTTTATCGTT
GGTCATGAACTCATCCACGGCTTCGATACGACCAGCTCCTATTTCGATGG
CAATGGTCACATGGAGTCCTTGTTGTCGGAAATTTCGCAACAGGCATTAG
AGGATCGCGCCGAGTGCTACATGGACTACTATGGCAAGTACCAGGTACCG
GAGATCAGCAGGCGTGTCAACGGAAAAACTACACTGGACGAGAATATCGC
AGACAATAGCGGATTAAGACAAGCATTGACGGCCTATCGCAGTCACAGGC
AGCAACTGCTGGAGCATCCTGGGCAGGAGAGGATAAGCGACGCCATGCCG
GGTCTCGATCTCACGCCGGAACAGTTGTTCTTCCTGGGATTTGCCCAGCT
ATTTTGCTCCCATTACGAGGAGGAGCACTACTGGAAAGGTCTTAGCGATG
TGCACACCTTCGACCAATTTCGTGTCCTGGGAGTTTTGTCCAACAGCGAG
GACTTCTTCCACGCCTACAACTGCTCCGTGGGCAGCGGCATGCGTCCTGG
CGCCAAAACGTGCCGACTTTGGTAGAAGCTTTCTAGACCAT
BS10128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-RA | 2109 | CG8358-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-RA | 2197 | CG8358-RA | 30..2139 | 17..2126 | 10550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9675552..9676664 | 17..1129 | 5565 | 100 | Plus |
| 3R | 32079331 | 3R | 9676724..9677720 | 1130..2126 | 4985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:09 has no hits.
BS10128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:01 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 1..2109 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:34 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 30..2139 | 17..2126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:08 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 36..2138 | 23..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:50 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 36..2138 | 23..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:47 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8358-RA | 36..2138 | 23..2125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:47 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9675558..9676664 | 23..1129 | 100 | -> | Plus |
| 3R | 9676724..9677719 | 1130..2125 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:08 Download gff for
BS10128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5501280..5502386 | 23..1129 | 100 | -> | Plus |
| arm_3R | 5502446..5503441 | 1130..2125 | 100 | | Plus |
BS10128.pep Sequence
Translation from 16 to 2124
> BS10128.pep
MFHESLKLISLMLLWVIVAAVLTDCEARSLVDRSENSDSNGSSTNRSAAE
YQLQEYAEFMKSYMNQSVEPCENFYEYACGNYRNVKPDRYSPGSRSNLGD
VTYTLIDITEQLLGRMDLAEALNVSSELAVAQRFYNACLGANLHPFNAAD
PAYLSLIRSIGGFPAVDGDAWKASNFNWINMSAHLANYGANGLIRETLQL
RYPFEPYTKLPELGFDHIIVHEENISRNTTRAFRLNEERMHGYLRAFGLP
EDRIREAIAGVFAFWRDALEIPPQCEVFDPYRIKRVFPQSEYYYNISWSG
LHSTNKLFCDFYYVELDKVCARHRKAVANYLAMKLLYRFDPKLKAPRYQR
NYCSVTLYQSMRFLFNKLYMANNFSEAKRLEMSEMVRELRKSLRKALEDA
DWLDAESRARALLKESRIQPRIGSFQDDALSDRIIREINSLKVIEDRYAE
TNINLQHLVVQINRFSSRHFQELTNDTKPQKILTGLQVGAGYYTPDNSIN
VMAGVVEPPIYQRHLPISLKFGTLGFIVGHELIHGFDTTSSYFDGNGHME
SLLSEISQQALEDRAECYMDYYGKYQVPEISRRVNGKTTLDENIADNSGL
RQALTAYRSHRQQLLEHPGQERISDAMPGLDLTPEQLFFLGFAQLFCSHY
EEEHYWKGLSDVHTFDQFRVLGVLSNSEDFFHAYNCSVGSGMRPGAKTCR
LW*
BS10128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8358-PA | 702 | CG8358-PA | 1..702 | 1..702 | 3701 | 100 | Plus |
| CG5527-PA | 717 | CG5527-PA | 10..717 | 6..702 | 1903 | 51.3 | Plus |
| Nep4-PC | 978 | CG4058-PC | 383..978 | 131..702 | 528 | 27.6 | Plus |
| Nep4-PB | 978 | CG4058-PB | 383..978 | 131..702 | 528 | 27.6 | Plus |
| Nep4-PA | 1040 | CG4058-PA | 445..1040 | 131..702 | 528 | 27.6 | Plus |
