Clone BS10132 Report

Search the DGRC for BS10132

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptswa-RA
Protein status:BS10132.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10132.3prime Sequence

964 bp (815 high quality bases) assembled on 2006-04-19

> BS10132.3prime
ATGGTCTAGAAAGCTTCTAGCGCTGGTTCCTTTGGTCAACGAACTCCTCC
TCGGGCATCGCAGGCAAACCATCCTTGTATGTGACATTGCTGCGGTTCAA
TGGATCACCATTACGGCAGCGAACGCAGGGCCCCAGGAATCGTAGCATCC
GACTGCCCAGTGTCGTCCTTTTACTCCTAAAGTGGTCATGCGCCTCCAAA
TGCGACATCGACATCGAGTGGACCAGCAGACGCGTCTGACTATCGTTGAT
GCTCTGATTATGAATGGTGTCATGGCTCTGATTGCGCCCCTGACTGATAT
TGAAGCCCATCACCTCGATGACTCGGTTGTTGCGCTTGTCAAAGTAGTAC
ATGCCCTCATGCTGGCCCCATTGCCTGGGCGAGATGAGCTCCCCCTGTTG
TTCCCACTGCCGCCTGGAGCTGGGTCGCTCCTCCTCGTGCGCCTCCACCT
CGATGGCCGAGTCGTTGCTGCTCGGCTGGCTGGTTTCCGAGTTGTTGGGC
GCCGGGGTTCTTCTGACCAAGGCCCTGGATGAGGTTTCCACACGATGTTC
GCCACTACCGCTGCCATCAGCTTCGGTGCTAACGCTGCTAAAGTCCAAAG
ATTGTGGATGAATCGCGCGTTGGACCTGGACGGGATTCTGGGCCACTCGG
GCAGAAGGCGCCACACTGAGCAGTGCCAACTCGATGGATCCTTTGCTGCT
GTTGTAGGTCAGGTCGCCCAGGGGATGGGGTGTGACCAGGACGTTTCCGG
AGGCGGGTATGGTGTCCACCAGGAAATCCGTTTGAGTGGCCTTGGCACTG
GTCGCCGATCGAATGTGGTACATGAAGTGGTGCTGTGAGTTGTCCTGCTG
GCGCCTAAACTTCTGCTGGCATTCGCTTAGCTCGGTGCGCAGGGTCTCGA
AATTGCACTTCATCTTCACAAATCATCTGTCTTTCTGTCCAGTCGTTCCT
GGACATACTCGTTG

BS10132.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3429-PA 1647 swa-RA 742..1647 922..17 4505 99.8 Minus
CG3429-PA 1647 swa-RA 699..743 964..920 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
swa-RA 2022 CG3429-RA 811..1759 964..17 4705 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6363681..6364217 17..553 2685 100 Plus
X 23542271 X 6364304..6364717 552..964 2005 99.5 Plus
X 23542271 X 6362196..6362444 708..964 665 85.7 Plus
X 23542271 X 6361800..6361974 204..385 590 89.6 Plus
X 23542271 X 6362088..6362196 552..660 365 89 Plus
X 23542271 X 6361749..6361799 17..67 255 100 Plus
X 23542271 X 6361979..6362036 496..553 200 89.7 Plus
Blast to na_te.dros performed on 2015-02-12 13:11:01 has no hits.

BS10132.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:19 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
swa-PA 699..1647 17..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:58 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3429-PA 699..1647 17..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:40 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
swa-RA 811..1769 9..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:21 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
swa-RA 811..1769 9..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:21 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6363671..6364216 9..552 99 <- Plus
X 6364305..6364717 553..964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:40 Download gff for BS10132.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6257704..6258249 9..552 99 <- Plus
arm_X 6258338..6258750 553..964 99   Plus

BS10132.5prime Sequence

909 bp (846 high quality bases) assembled on 2006-04-19

> BS10132.5prime
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATGTACCACATTCGATCGGCGACCAGTGCCAAGGCCACTCAAAC
GGATTTCCT

BS10132.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3429-PA 1647 swa-RA 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
swa-RA 2022 CG3429-RA 113..1005 17..909 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6364523..6365145 909..287 3115 100 Minus
X 23542271 X 6365325..6365596 288..17 1360 100 Minus
X 23542271 X 6362284..6362662 875..497 1310 89.7 Minus
X 23542271 X 6362667..6362833 456..290 625 91.6 Minus
X 23542271 X 6363110..6363242 288..150 525 93.5 Minus
Blast to na_te.dros performed on 2015-02-13 09:28:50 has no hits.

BS10132.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:20 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
swa-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:59 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3429-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:03 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
swa-RA 109..1005 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:39 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
swa-RA 109..1005 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:39 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6364523..6365144 288..909 100 <- Minus
X 6365326..6365600 10..287 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:03 Download gff for BS10132.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6258556..6259177 288..909 100 <- Minus
arm_X 6259359..6259633 10..287 98   Minus

BS10132.complete Sequence

1679 bp (1679 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636569

> BS10132.complete
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATGTACCACATTCGATCGGCGACCAGTGCCAAGGCCACTCAAAC
GGATTTCCTGGTGGACACCATACCCGCCTCCGGAAACGTCCTGGTCACAC
CCCATCCCCTGGGCGACCTGACCTACAACAGCAGCAAAGGATCCATCGAG
TTGGCACTGCTCAGTGTGGCGCCTTCTGCCCGAGTGGCCCAGAATCCCGT
CCAGGTCCAACGCGCGATTCATCCACAATCTTTGGACTTTAGCAGCGTTA
GCACCGAAGCTGATGGCAGCGGTAGTGGCGAACATCGTGTGGAAACCTCA
TCCAGGGCCTTGGTCAGAAGAACCCCGGCGCCCAACAACTCGGAAACCAG
CCAGCCGAGCAGCAACGACTCGGCCATCGAGGTGGAGGCGCACGAGGAGG
AGCGACCCAGCTCCAGGCGGCAGTGGGAACAACAGGGGGAGCTCATCTCG
CCCAGGCAATGGGGCCAGCATGAGGGCATGTACTACTTTGACAAGCGCAA
CAACCGAGTCATCGAGGTGATGGGCTTCAATATCAGTCAGGGGCGCAATC
AGAGCCATGACACCATTCATAATCAGAGCATCAACGATAGTCAGACGCGT
CTGCTGGTCCACTCGATGTCGATGTCGCATTTGGAGGCGCATGACCACTT
TAGGAGTAAAAGGACGACACTGGGCAGTCGGATGCTACGATTCCTGGGGC
CCTGCGTTCGCTGCCGTAATGGTGATCCATTGAACCGCAGCAATGTCACA
TACAAGGATGGTTTGCCTGCGATGCCCGAGGAGGAGTTCGTTGACCAAAG
GAACCAGCGCTAGAAGCTTTCTAGACCAT

BS10132.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
swa-RA 1647 CG3429-PA 1..1647 17..1663 8235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
swa-RA 2022 CG3429-RA 113..1759 17..1663 8235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6364304..6365145 1128..287 4210 100 Minus
X 23542271 X 6363681..6364217 1663..1127 2685 100 Minus
X 23542271 X 6362196..6362662 972..497 1520 88.4 Minus
X 23542271 X 6365325..6365596 288..17 1360 100 Minus
X 23542271 X 6362667..6362833 456..290 625 91.6 Minus
X 23542271 X 6361800..6361974 1476..1295 590 89.6 Minus
X 23542271 X 6363110..6363242 288..150 525 93.5 Minus
X 23542271 X 6362088..6362196 1128..1020 365 89 Minus
X 23542271 X 6361749..6361799 1663..1613 255 100 Minus
X 23542271 X 6361979..6362036 1184..1127 200 89.7 Minus
Blast to na_te.dros performed on 2014-11-27 13:20:30 has no hits.

BS10132.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:05 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
swa-RA 1..1647 17..1663 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:35 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
swa-RA 110..1770 10..1671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:58 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
swa-RA 113..1759 17..1663 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:05 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
swa-RA 110..1770 10..1671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:13 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
swa-RA 113..1759 17..1663 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:13 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
X 6363681..6364216 1128..1663 100 <- Minus
X 6364305..6365144 288..1127 100 <- Minus
X 6365326..6365596 17..287 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:58 Download gff for BS10132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6257714..6258249 1128..1663 100 <- Minus
arm_X 6258338..6259177 288..1127 100 <- Minus
arm_X 6259359..6259629 17..287 100   Minus

BS10132.pep Sequence

Translation from 16 to 1662

> BS10132.pep
MSLQDESFPTDELFDQLNNLSSSGARNTWFAEHHKPAVFERDTAPFLEIC
YADPDFDADGDVANKSAKTCVSDPVGRDQEDEDDYDEDVDGDDHKLGCEK
APLGSGRSSKAVSYQDIHSAYTKRRFQHVTSKVGQYIAEIQAQDQKRRNV
KFAGFQRVNSMPESLTPTLQQVYVHDGDFKVDKNCQTHSNSDSNYNSNSN
NSSSSFDRLLAENESLQQKINSLRVEAKRLQGFNEYVQERLDRKTDDFVK
MKCNFETLRTELSECQQKLRRQQDNSQHHFMYHIRSATSAKATQTDFLVD
TIPASGNVLVTPHPLGDLTYNSSKGSIELALLSVAPSARVAQNPVQVQRA
IHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTPAPNNSETSQPSSN
DSAIEVEAHEEERPSSRRQWEQQGELISPRQWGQHEGMYYFDKRNNRVIE
VMGFNISQGRNQSHDTIHNQSINDSQTRLLVHSMSMSHLEAHDHFRSKRT
TLGSRMLRFLGPCVRCRNGDPLNRSNVTYKDGLPAMPEEEFVDQRNQR*

BS10132.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
swa-PA 548 CG3429-PA 1..548 1..548 2872 100 Plus