Clone Sequence Records
BS10132.3prime Sequence
964 bp (815 high quality bases) assembled on 2006-04-19
> BS10132.3prime
ATGGTCTAGAAAGCTTCTAGCGCTGGTTCCTTTGGTCAACGAACTCCTCC
TCGGGCATCGCAGGCAAACCATCCTTGTATGTGACATTGCTGCGGTTCAA
TGGATCACCATTACGGCAGCGAACGCAGGGCCCCAGGAATCGTAGCATCC
GACTGCCCAGTGTCGTCCTTTTACTCCTAAAGTGGTCATGCGCCTCCAAA
TGCGACATCGACATCGAGTGGACCAGCAGACGCGTCTGACTATCGTTGAT
GCTCTGATTATGAATGGTGTCATGGCTCTGATTGCGCCCCTGACTGATAT
TGAAGCCCATCACCTCGATGACTCGGTTGTTGCGCTTGTCAAAGTAGTAC
ATGCCCTCATGCTGGCCCCATTGCCTGGGCGAGATGAGCTCCCCCTGTTG
TTCCCACTGCCGCCTGGAGCTGGGTCGCTCCTCCTCGTGCGCCTCCACCT
CGATGGCCGAGTCGTTGCTGCTCGGCTGGCTGGTTTCCGAGTTGTTGGGC
GCCGGGGTTCTTCTGACCAAGGCCCTGGATGAGGTTTCCACACGATGTTC
GCCACTACCGCTGCCATCAGCTTCGGTGCTAACGCTGCTAAAGTCCAAAG
ATTGTGGATGAATCGCGCGTTGGACCTGGACGGGATTCTGGGCCACTCGG
GCAGAAGGCGCCACACTGAGCAGTGCCAACTCGATGGATCCTTTGCTGCT
GTTGTAGGTCAGGTCGCCCAGGGGATGGGGTGTGACCAGGACGTTTCCGG
AGGCGGGTATGGTGTCCACCAGGAAATCCGTTTGAGTGGCCTTGGCACTG
GTCGCCGATCGAATGTGGTACATGAAGTGGTGCTGTGAGTTGTCCTGCTG
GCGCCTAAACTTCTGCTGGCATTCGCTTAGCTCGGTGCGCAGGGTCTCGA
AATTGCACTTCATCTTCACAAATCATCTGTCTTTCTGTCCAGTCGTTCCT
GGACATACTCGTTG
BS10132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3429-PA | 1647 | swa-RA | 742..1647 | 922..17 | 4505 | 99.8 | Minus |
CG3429-PA | 1647 | swa-RA | 699..743 | 964..920 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 811..1759 | 964..17 | 4705 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6363681..6364217 | 17..553 | 2685 | 100 | Plus |
X | 23542271 | X | 6364304..6364717 | 552..964 | 2005 | 99.5 | Plus |
X | 23542271 | X | 6362196..6362444 | 708..964 | 665 | 85.7 | Plus |
X | 23542271 | X | 6361800..6361974 | 204..385 | 590 | 89.6 | Plus |
X | 23542271 | X | 6362088..6362196 | 552..660 | 365 | 89 | Plus |
X | 23542271 | X | 6361749..6361799 | 17..67 | 255 | 100 | Plus |
X | 23542271 | X | 6361979..6362036 | 496..553 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:11:01 has no hits.
BS10132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:19 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-PA | 699..1647 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:58 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3429-PA | 699..1647 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:40 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 811..1769 | 9..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:21 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 811..1769 | 9..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:21 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6363671..6364216 | 9..552 | 99 | <- | Plus |
X | 6364305..6364717 | 553..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:40 Download gff for
BS10132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6257704..6258249 | 9..552 | 99 | <- | Plus |
arm_X | 6258338..6258750 | 553..964 | 99 | | Plus |
BS10132.5prime Sequence
909 bp (846 high quality bases) assembled on 2006-04-19
> BS10132.5prime
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATGTACCACATTCGATCGGCGACCAGTGCCAAGGCCACTCAAAC
GGATTTCCT
BS10132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3429-PA | 1647 | swa-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 113..1005 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6364523..6365145 | 909..287 | 3115 | 100 | Minus |
X | 23542271 | X | 6365325..6365596 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 6362284..6362662 | 875..497 | 1310 | 89.7 | Minus |
X | 23542271 | X | 6362667..6362833 | 456..290 | 625 | 91.6 | Minus |
X | 23542271 | X | 6363110..6363242 | 288..150 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:28:50 has no hits.
BS10132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:20 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:59 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3429-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:03 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 109..1005 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:39 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 109..1005 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:39 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6364523..6365144 | 288..909 | 100 | <- | Minus |
X | 6365326..6365600 | 10..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:03 Download gff for
BS10132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6258556..6259177 | 288..909 | 100 | <- | Minus |
arm_X | 6259359..6259633 | 10..287 | 98 | | Minus |
BS10132.complete Sequence
1679 bp (1679 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636569
> BS10132.complete
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATGTACCACATTCGATCGGCGACCAGTGCCAAGGCCACTCAAAC
GGATTTCCTGGTGGACACCATACCCGCCTCCGGAAACGTCCTGGTCACAC
CCCATCCCCTGGGCGACCTGACCTACAACAGCAGCAAAGGATCCATCGAG
TTGGCACTGCTCAGTGTGGCGCCTTCTGCCCGAGTGGCCCAGAATCCCGT
CCAGGTCCAACGCGCGATTCATCCACAATCTTTGGACTTTAGCAGCGTTA
GCACCGAAGCTGATGGCAGCGGTAGTGGCGAACATCGTGTGGAAACCTCA
TCCAGGGCCTTGGTCAGAAGAACCCCGGCGCCCAACAACTCGGAAACCAG
CCAGCCGAGCAGCAACGACTCGGCCATCGAGGTGGAGGCGCACGAGGAGG
AGCGACCCAGCTCCAGGCGGCAGTGGGAACAACAGGGGGAGCTCATCTCG
CCCAGGCAATGGGGCCAGCATGAGGGCATGTACTACTTTGACAAGCGCAA
CAACCGAGTCATCGAGGTGATGGGCTTCAATATCAGTCAGGGGCGCAATC
AGAGCCATGACACCATTCATAATCAGAGCATCAACGATAGTCAGACGCGT
CTGCTGGTCCACTCGATGTCGATGTCGCATTTGGAGGCGCATGACCACTT
TAGGAGTAAAAGGACGACACTGGGCAGTCGGATGCTACGATTCCTGGGGC
CCTGCGTTCGCTGCCGTAATGGTGATCCATTGAACCGCAGCAATGTCACA
TACAAGGATGGTTTGCCTGCGATGCCCGAGGAGGAGTTCGTTGACCAAAG
GAACCAGCGCTAGAAGCTTTCTAGACCAT
BS10132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 1647 | CG3429-PA | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 113..1759 | 17..1663 | 8235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6364304..6365145 | 1128..287 | 4210 | 100 | Minus |
X | 23542271 | X | 6363681..6364217 | 1663..1127 | 2685 | 100 | Minus |
X | 23542271 | X | 6362196..6362662 | 972..497 | 1520 | 88.4 | Minus |
X | 23542271 | X | 6365325..6365596 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 6362667..6362833 | 456..290 | 625 | 91.6 | Minus |
X | 23542271 | X | 6361800..6361974 | 1476..1295 | 590 | 89.6 | Minus |
X | 23542271 | X | 6363110..6363242 | 288..150 | 525 | 93.5 | Minus |
X | 23542271 | X | 6362088..6362196 | 1128..1020 | 365 | 89 | Minus |
X | 23542271 | X | 6361749..6361799 | 1663..1613 | 255 | 100 | Minus |
X | 23542271 | X | 6361979..6362036 | 1184..1127 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:20:30 has no hits.
BS10132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:05 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 1..1647 | 17..1663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:35 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 110..1770 | 10..1671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:58 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 113..1759 | 17..1663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:05 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 110..1770 | 10..1671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:13 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 113..1759 | 17..1663 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:13 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6363681..6364216 | 1128..1663 | 100 | <- | Minus |
X | 6364305..6365144 | 288..1127 | 100 | <- | Minus |
X | 6365326..6365596 | 17..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:58 Download gff for
BS10132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6257714..6258249 | 1128..1663 | 100 | <- | Minus |
arm_X | 6258338..6259177 | 288..1127 | 100 | <- | Minus |
arm_X | 6259359..6259629 | 17..287 | 100 | | Minus |
BS10132.pep Sequence
Translation from 16 to 1662
> BS10132.pep
MSLQDESFPTDELFDQLNNLSSSGARNTWFAEHHKPAVFERDTAPFLEIC
YADPDFDADGDVANKSAKTCVSDPVGRDQEDEDDYDEDVDGDDHKLGCEK
APLGSGRSSKAVSYQDIHSAYTKRRFQHVTSKVGQYIAEIQAQDQKRRNV
KFAGFQRVNSMPESLTPTLQQVYVHDGDFKVDKNCQTHSNSDSNYNSNSN
NSSSSFDRLLAENESLQQKINSLRVEAKRLQGFNEYVQERLDRKTDDFVK
MKCNFETLRTELSECQQKLRRQQDNSQHHFMYHIRSATSAKATQTDFLVD
TIPASGNVLVTPHPLGDLTYNSSKGSIELALLSVAPSARVAQNPVQVQRA
IHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTPAPNNSETSQPSSN
DSAIEVEAHEEERPSSRRQWEQQGELISPRQWGQHEGMYYFDKRNNRVIE
VMGFNISQGRNQSHDTIHNQSINDSQTRLLVHSMSMSHLEAHDHFRSKRT
TLGSRMLRFLGPCVRCRNGDPLNRSNVTYKDGLPAMPEEEFVDQRNQR*
BS10132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-PA | 548 | CG3429-PA | 1..548 | 1..548 | 2872 | 100 | Plus |