Clone Sequence Records
BS10135.3prime Sequence
902 bp (835 high quality bases) assembled on 2006-04-19
> BS10135.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTGCAGGTGGACGTGTCCATTGGACTG
GCTGGCTGGATAAAGGCCGTGGCCGCCGAGCTGGGCGGATTGGTTGGCGT
AAACGCCGACAGTGAGGAGTTGCTGCTGCTGTTAACAAGATTGCCGCTGG
ACGAGTTGTTCAGGCTGATGTTCATCAAATTGGACGACGACGACGAAGCG
CTGGAGTGGCTAGTGAGCTGGGCCAGCAGACCTCCACCTCCACCGCCGGC
CAAGAAGGTGGCACTGCCGCCAGCCGAATTTGACGAGCCAAGGCTTAGGC
GTTCGCCTCCCAGATTCGAGAGAAAGCCGCCAGCGGCATTCCCAGCTGAT
ACGGACGCGGACGATGAGGAGCTGCCGGTTCCCAAAATGCCCAGCAGTGG
GTTGGTTGAGGTCAGCACGTTCGGTGCGGAAGTGTTCAGGCCCAGCATGG
GCGTTGGCAGTGCTGGCTTTATGAAGCGTTCGCTGGCACGACGATTCACT
AGCTGGCCGCAGGCATAGCAGCGGTTTTGCACCGCCGTGCCCGGACTTAG
AGGTCGGCTACTCGAGGGACTGTGGGAGACGGGACTGCTGATGGTGCGTT
GACGTTGGGCGCTCACCGCTGAAGCTGCGGCGGCGGCTGCTGCCGTCGCT
ACAGCGAACGAACCGCCTCCCATCAGGTTCTCGTTGTAGAAGCGTTCCTC
GTCCATCTCCAGCGAGGATTCCGATTCGGAGAGGTGCCGGCATAGGGCTT
CGCGGCGCTCCACCTCCTGCTTTAGCTTGCGCTGAAGGCGAGCGTTTTCC
TCGCGAATCGACTTCTCTTCCTGCGCATACTGCTGTGTTTTGATAGTGGC
TTCCTTCTGAGCGCTCGCCAGGTCGGAGCGATAGCGAAGCACTTCGGAGC
GC
BS10135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PA | 1599 | CG6664-RA | 714..1599 | 902..17 | 4430 | 100 | Minus |
| CG6664-PB | 1599 | CG6664-RB | 714..1599 | 902..17 | 4430 | 100 | Minus |
| CG6664-PC | 1599 | CG6664-RC | 714..1599 | 902..17 | 4430 | 100 | Minus |
| CG6664-PD | 1716 | CG6664-RD | 831..1716 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 1154..2039 | 902..17 | 4430 | 100 | Minus |
| CG6664-RB | 2552 | CG6664-RB | 1103..1988 | 902..17 | 4430 | 100 | Minus |
| CG6664-RA | 2482 | CG6664-RA | 1033..1918 | 902..17 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013450..17013930 | 17..497 | 2405 | 100 | Plus |
| 3L | 28110227 | 3L | 17013993..17014398 | 497..902 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 16:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2961 | 171..20 | 126 | 57 | Minus |
BS10135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:25 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 831..1716 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:06 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 831..1716 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:28:58 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 1103..1991 | 14..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:24:07 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 1033..1921 | 14..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:24:07 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013447..17013929 | 14..496 | 99 | <- | Plus |
| 3L | 17013993..17014398 | 497..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:28:58 Download gff for
BS10135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006547..17007029 | 14..496 | 99 | <- | Plus |
| arm_3L | 17007093..17007498 | 497..902 | 100 | | Plus |
BS10135.5prime Sequence
811 bp (809 high quality bases) assembled on 2006-04-19
> BS10135.5prime
GAAGTTATCAGTCGACATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGG
ACGGTGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAG
AAGAGGATCGAATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACT
GGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCC
TCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAA
TACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAA
GGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTCTGACCAACG
ATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAG
CAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAA
GATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGC
AGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAG
GAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGA
GAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTA
CGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCC
ACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCGCTA
TCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGCCACTATCAAAACACAGC
AGTATGCGCAG
BS10135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PD | 1716 | CG6664-RD | 117..912 | 16..811 | 3980 | 100 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..1235 | 16..811 | 3980 | 100 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1184 | 16..811 | 3980 | 100 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1114 | 16..811 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014317..17014904 | 811..224 | 2940 | 100 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 133..16 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 223..133 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:36:25 has no hits.
BS10135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:26 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 106..912 | 3..811 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:08 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 106..912 | 3..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:23:36 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 380..1184 | 5..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:19:51 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 308..1114 | 3..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:19:51 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014987..17015077 | 133..223 | 100 | <- | Minus |
| 3L | 17015141..17015268 | 3..132 | 96 | | Minus |
| 3L | 17014317..17014904 | 224..811 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:23:36 Download gff for
BS10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007417..17008004 | 224..811 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 133..223 | 100 | <- | Minus |
| arm_3L | 17008241..17008368 | 3..132 | 96 | | Minus |
BS10135.complete Sequence
1631 bp (1631 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636570
> BS10135.complete
GAAGTTATCAGTCGACATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGG
ACGGTGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAG
AAGAGGATCGAATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACT
GGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCC
TCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAA
TACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAA
GGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTCTGACCAACG
ATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAG
CAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAA
GATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGC
AGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAG
GAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGA
GAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTA
CGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCC
ACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCGCTA
TCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGCCACTATCAAAACACAGC
AGTATGCGCAGGAAGAGAAGTCGATTCGCGAGGAAAACGCTCGCCTTCAG
CGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAAGCCCTATGCCGGCACCT
CTCCGAATCGGAATCCTCGCTGGAGATGGACGAGGAACGCTTCTACAACG
AGAACCTGATGGGAGGCGGTTCGTTCGCTGTAGCGACGGCAGCAGCCGCC
GCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAACGCACCATCAGCAGTCC
CGTCTCCCACAGTCCCTCGAGTAGCCGACCTCTAAGTCCGGGCACGGCGG
TGCAAAACCGCTGCTATGCCTGCGGCCAGCTAGTGAATCGTCGTGCCAGC
GAACGCTTCATAAAGCCAGCACTGCCAACGCCCATGCTGGGCCTGAACAC
TTCCGCACCGAACGTGCTGACCTCAACCAACCCACTGCTGGGCATTTTGG
GAACCGGCAGCTCCTCATCGTCCGCGTCCGTATCAGCTGGGAATGCCGCT
GGCGGCTTTCTCTCGAATCTGGGAGGCGAACGCCTAAGCCTTGGCTCGTC
AAATTCGGCTGGCGGCAGTGCCACCTTCTTGGCCGGCGGTGGAGGTGGAG
GTCTGCTGGCCCAGCTCACTAGCCACTCCAGCGCTTCGTCGTCGTCGTCC
AATTTGATGAACATCAGCCTGAACAACTCGTCCAGCGGCAATCTTGTTAA
CAGCAGCAGCAACTCCTCACTGTCGGCGTTTACGCCAACCAATCCGCCCA
GCTCGGCGGCCACGGCCTTTATCCAGCCAGCCAGTCCAATGGACACGTCC
ACCTGCAAGGACTAGAAGCTTTCTAGACCAT
BS10135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 1599 | CG6664-PC | 1..1599 | 17..1615 | 7995 | 100 | Plus |
| CG6664-RB | 1599 | CG6664-PB | 1..1599 | 17..1615 | 7995 | 100 | Plus |
| CG6664-RA | 1599 | CG6664-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..2039 | 16..1615 | 8000 | 100 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1988 | 16..1615 | 8000 | 100 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1918 | 16..1615 | 8000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013993..17014904 | 1135..224 | 4560 | 100 | Minus |
| 3L | 28110227 | 3L | 17013450..17013930 | 1615..1135 | 2405 | 100 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 133..16 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 223..133 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:33 has no hits.
BS10135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:06 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RD | 106..1716 | 3..1615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:39 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RC | 436..2042 | 9..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:32 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 390..1988 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:07 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RC | 436..2042 | 9..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:17 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 320..1918 | 17..1615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:17 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013450..17013929 | 1136..1615 | 100 | <- | Minus |
| 3L | 17013993..17014904 | 224..1135 | 100 | <- | Minus |
| 3L | 17014987..17015077 | 133..223 | 100 | <- | Minus |
| 3L | 17015141..17015256 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:32 Download gff for
BS10135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006550..17007029 | 1136..1615 | 100 | <- | Minus |
| arm_3L | 17007093..17008004 | 224..1135 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 133..223 | 100 | <- | Minus |
| arm_3L | 17008241..17008356 | 17..132 | 100 | | Minus |
BS10135.pep Sequence
Translation from 16 to 1614
> BS10135.pep
MESPCESESSLDGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKT
KCKVVQEENRCLKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAH
HYEREEECLTNDLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQ
AETDNKQTNLEQLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQ
IKLDQPVSDPTTPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLA
SAQKEATIKTQQYAQEEKSIREENARLQRKLKQEVERREALCRHLSESES
SLEMDEERFYNENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSP
SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNV
LTSTNPLLGILGTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGG
SATFLAGGGGGGLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNS
SLSAFTPTNPPSSAATAFIQPASPMDTSTCKD*
BS10135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PC | 532 | CG6664-PC | 1..532 | 1..532 | 2647 | 100 | Plus |
| CG6664-PB | 532 | CG6664-PB | 1..532 | 1..532 | 2647 | 100 | Plus |
| CG6664-PA | 532 | CG6664-PA | 1..532 | 1..532 | 2647 | 100 | Plus |
