Clone Sequence Records
BS10137.3prime Sequence
905 bp (845 high quality bases) assembled on 2006-04-19
> BS10137.3prime
ATGGTCTAGAAAGCTTTTATTTGCGTTTTAGTTTGCGGTCACCTTTGGGT
TCCCTTCTTTTAAACATTCGGATTAGTCCCAAGAGCGTGATCACAGGTAG
TAGCAGGCTTAGGGCCACGACCGAGTAGACATCCAAGGAGTAGTAAACAA
AGCGGGAGAGATGCACGGCACTTGGTTGGGTCAGAGGAGCTCCTTTCGTC
TCCGCCACATGTTCCACCCACCAAATGGCCGTCTCCAAGGGACCTTGGAT
GCGGTTGTTGTACGATGAGGCCACCTCCTTGGCTCTTGCCTTGAAAGAAG
GATCTAGTGCCTTGGTCAACGCTTCGTAGACAGTATTCTCATCCAGTTTC
TTAAGCTCTAATTGCAAGGCCATTCCGCGCTGCACCAATGCGGCAATATT
GAGGGATTGGTCGCCGTAAATTGGGACACCCACAATCGGCACAGCACTGG
AGACCGCCTCCGTGGTGCCCATTAAGCCACCGTGGGACATAAATACCTTT
AGATTTGGATGAGCGAGGATGTCTCGCTGAGGCAGCCACTTCCTGATGTG
CAGATTTGGTGGCTTATTGGGCAGCGTGTCATTTTCATACTTCCAGATGA
CCTCCTGCTCCAATCTTCCAATCGCTTTAACGATTCCATCTCTCCGAGCA
GCGGAAAGAGAACACGCTTTCAGCTGAGAGCCCCAGCTAATTAGGATGAC
TCCTTTGGGTGCGTTATCCAGTATTTTCTGAAGATCCGAGGGCAGCGGTT
TCGGTGGACTTATATGTACACCACCCACTTCGATGACGTTTGGGGGCAAA
GGCTTTGGCCCACTGAGCGAAAAGTGCTGGTTGACCAGCATTAGAGAAGT
ATTCCTCACCAAGTCCTCCGTGGACGGCAGTCCAGGACCGAATCTTTGGC
GAATC
BS10137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-PC | 1554 | CG17322-RC | 666..1554 | 905..17 | 4445 | 100 | Minus |
CG17322-PD | 1554 | CG17322-RD | 666..1554 | 905..17 | 4445 | 100 | Minus |
CG17322-PA | 1554 | CG17322-RA | 666..1554 | 905..17 | 4445 | 100 | Minus |
CG17322-PB | 1554 | CG17322-RB | 666..1554 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1903 | CG17322-RB | 820..1708 | 905..17 | 4445 | 100 | Minus |
CG17322-RA | 1807 | CG17322-RA | 724..1612 | 905..17 | 4445 | 100 | Minus |
CG17322-RD | 1900 | CG17322-RD | 817..1705 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18827976..18828864 | 905..17 | 4445 | 100 | Minus |
2L | 23513712 | 2L | 18825560..18825713 | 609..456 | 245 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:19:57 has no hits.
BS10137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:30 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PD | 666..1554 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:13 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PB | 666..1554 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:20 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 817..1707 | 13..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:17 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 817..1707 | 13..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:17 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18827976..18828866 | 13..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:20 Download gff for
BS10137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18827976..18828866 | 13..905 | 99 | | Minus |
BS10137.5prime Sequence
876 bp (781 high quality bases) assembled on 2006-04-19
> BS10137.5prime
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACT
GCAATACCACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCT
CCTGGCTACTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGC
GATGAGCGTGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCT
GTGCCCTGATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCA
TCGTATATATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGC
GGGACGATTGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATA
AAATGTTTACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGT
CCTGGACTGCCGTCCACGGAGGACTTGGTGAGGAATACTTCTCTAATGCT
GGTCAACCAGCACTTTTCGCTCAGTGGGCCAAAGCCTTTGCCCCCAAACG
TCATCGAAGTGGGTGGTGTACATATAAGTCCACCGAAACCGCTGCCCTCG
GATCTTCAGAAATACTGGATAACGCA
BS10137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-PC | 1554 | CG17322-RC | 1..846 | 17..862 | 4230 | 100 | Plus |
CG17322-PD | 1554 | CG17322-RD | 1..846 | 17..862 | 4230 | 100 | Plus |
CG17322-PA | 1554 | CG17322-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG17322-PB | 1554 | CG17322-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1903 | CG17322-RB | 155..1015 | 17..876 | 4280 | 99.9 | Plus |
CG17322-RA | 1807 | CG17322-RA | 59..919 | 17..876 | 4280 | 99.9 | Plus |
CG17322-RD | 1900 | CG17322-RD | 152..1012 | 17..876 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18827508..18827886 | 273..651 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 18827002..18827260 | 17..275 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 18827946..18828171 | 652..876 | 1080 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:34:29 has no hits.
BS10137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:31 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PD | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:14 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PB | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:16 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 139..1011 | 4..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:48 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 139..1011 | 4..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:48 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18826989..18827259 | 4..274 | 98 | -> | Plus |
2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
2L | 18827946..18828170 | 652..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:16 Download gff for
BS10137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18826989..18827259 | 4..274 | 98 | -> | Plus |
arm_2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
arm_2L | 18827946..18828170 | 652..875 | 99 | | Plus |
BS10137.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636571
> BS10137.complete
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACT
GCAATACCACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCT
CCTGGCTACTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGC
GATGAGCGTGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCT
GTGCCCTGATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCA
TCGTATATATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGC
GGGACGATTGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATA
AAATGTTTACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGT
CCTGGACTGCCGTCCACGGAGGACTTGGTGAGGAATACTTCTCTAATGCT
GGTCAACCAGCACTTTTCGCTCAGTGGGCCAAAGCCTTTGCCCCCAAACG
TCATCGAAGTGGGTGGTGTACATATAAGTCCACCGAAACCGCTGCCCTCG
GATCTTCAGAAAATACTGGATAACGCACCCAAAGGAGTCATCCTAATTAG
CTGGGGCTCTCAGCTGAAAGCGTGTTCTCTTTCCGCTGCTCGGAGAGATG
GAATCGTTAAAGCGATTGGAAGATTGGAGCAGGAGGTCATCTGGAAGTAT
GAAAATGACACGCTGCCCAATAAGCCACCAAATCTGCACATCAGGAAGTG
GCTGCCTCAGCGAGACATCCTCGCTCATCCAAATCTAAAGGTATTTATGT
CCCACGGTGGCTTAATGGGCACCACGGAGGCGGTCTCCAGTGCTGTGCCG
ATTGTGGGTGTCCCAATTTACGGCGACCAATCCCTCAATATTGCCGCATT
GGTGCAGCGCGGAATGGCCTTGCAATTAGAGCTTAAGAAACTGGATGAGA
ATACTGTCTACGAAGCGTTGACCAAGGCACTAGATCCTTCTTTCAAGGCA
AGAGCCAAGGAGGTGGCCTCATCGTACAACAACCGCATCCAAGGTCCCTT
GGAGACGGCCATTTGGTGGGTGGAACATGTGGCGGAGACGAAAGGAGCTC
CTCTGACCCAACCAAGTGCCGTGCATCTCTCCCGCTTTGTTTACTACTCC
TTGGATGTCTACTCGGTCGTGGCCCTAAGCCTGCTACTACCTGTGATCAC
GCTCTTGGGACTAATCCGAATGTTTAAAAGAAGGGAACCCAAAGGTGACC
GCAAACTAAAACGCAAATAAAAGCTTTCTAGACCAT
BS10137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1554 | CG17322-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG17322-RA | 1554 | CG17322-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG17322-RD | 1554 | CG17322-PD | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1903 | CG17322-RB | 155..1708 | 17..1570 | 7770 | 100 | Plus |
CG17322-RA | 1807 | CG17322-RA | 59..1612 | 17..1570 | 7770 | 100 | Plus |
CG17322-RD | 1900 | CG17322-RD | 152..1705 | 17..1570 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18827946..18828864 | 652..1570 | 4595 | 100 | Plus |
2L | 23513712 | 2L | 18827508..18827886 | 273..651 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 18827002..18827260 | 17..275 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 18825560..18825713 | 978..1131 | 245 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:36 has no hits.
BS10137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:54 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:21 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 51..1612 | 11..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:51 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 152..1703 | 17..1568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:54 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 51..1612 | 11..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:45 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 152..1703 | 17..1568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:45 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18827002..18827259 | 17..274 | 100 | -> | Plus |
2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
2L | 18827946..18828862 | 652..1568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:51 Download gff for
BS10137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
arm_2L | 18827002..18827259 | 17..274 | 100 | -> | Plus |
arm_2L | 18827946..18828862 | 652..1568 | 100 | | Plus |
BS10137.pep Sequence
Translation from 16 to 1569
> BS10137.pep
MCGCWKVFCLLALLSLVAFSDSLRILGLFPHPAISHFKFFHPIMRGLAEA
GHSVDVISPFEDKDPPNGYKDHLLPPSTLTDTISLEDFERPYSFLFHYVE
FFILHKMGREDCNTTLHSRALTEILKNPPGYYDVILLEQFNTDCAMSVAH
VFQAPVIGMSSCALMPWHYERFGAPLIPSYISALFQGQSQEMSFAGRLGN
WITVHSLNLLYKMFTVPAGNALIRQRFGPGLPSTEDLVRNTSLMLVNQHF
SLSGPKPLPPNVIEVGGVHISPPKPLPSDLQKILDNAPKGVILISWGSQL
KACSLSAARRDGIVKAIGRLEQEVIWKYENDTLPNKPPNLHIRKWLPQRD
ILAHPNLKVFMSHGGLMGTTEAVSSAVPIVGVPIYGDQSLNIAALVQRGM
ALQLELKKLDENTVYEALTKALDPSFKARAKEVASSYNNRIQGPLETAIW
WVEHVAETKGAPLTQPSAVHLSRFVYYSLDVYSVVALSLLLPVITLLGLI
RMFKRREPKGDRKLKRK*
BS10137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-PB | 517 | CG17322-PB | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PA | 517 | CG17322-PA | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PD | 517 | CG17322-PD | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PC | 517 | CG17322-PC | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17323-PD | 519 | CG17323-PD | 9..506 | 7..502 | 1570 | 59.8 | Plus |