Clone BS10138 Report

Search the DGRC for BS10138

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptmnd-RA
Protein status:BS10138.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10138.3prime Sequence

881 bp (842 high quality bases) assembled on 2006-04-19

> BS10138.3prime
ATGGTCTAGAAAGCTTCTAGTCGAACTTCTCCTGGTTGGGCATACAGATG
AAGAATTTGGAGCACCACAGGTTGATCGCCTGCGAAGTGTCCGCCAGCCA
TTTGACCGGTTTGTGGATGGTCAGGTAGTAGACCGGAATTCCAGACAGTA
TAATGATCGTCCCGATTCCTACCACATATGGCGTCTGCGTGCAAGAGAAG
ATGACCAGGAACAGGCAGACGATCAGATAGATGATGGGCAGCGCCAAGTT
GACCTTGATGGGTCGCTCCGTCTTGGGTTGCTTGTAGCGCATCCACAGCA
GTCCGGATACCGAGATCAGCGTGAACAACGCCTCCACGTAGCTGACGTAG
TTGATTAGTACGTAGACGTCCTCGATGAACAGCAGCAGCAAGGTGAGCAC
GCCCAGGAATATCAGCGAGGGCACAGGTGTCAGGCAATTAACGTTAATCA
GCGAAATGGCGGCCGGCAGGTGACCATTCCTTGCACCGACGAAGAAAAGT
CGCGAGGACGCGAAGATCGCTCCATTCAGCGAACCAAAAGTGGAGCAGGC
CACAGCGAAGGGCATAATCCAGGACATATACCCCAGCATCTTGTCGCCAA
ACGTGACTGCCACTGCATCTGACGAAAGGATCTCGTCTGGCGAGAGAACC
GAAAAGTATGCAATATTCGTGATCATATAGATGACCGTGACCACCGGCAT
TGAGATGCAAATGGCCTTGGGCAGGTTTCGGTACGGATCCTTGAGCTCCT
CTGTTACAAAGTTCAAATAGTTCCAGCCGGAGTACGAGAAGAGGCCGCTA
TAGAAGGCCAGGGCTATATATCCAGGATCTTGAAGGCCTCCCGAGAAGGG
ATTATCCCAGTGCTCTGTGTTTCCATCGAAC

BS10138.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3297-PC 1500 mnd-RC 636..1500 881..17 4325 100 Minus
CG3297-PA 1500 mnd-RA 636..1500 881..17 4325 100 Minus
CG3297-PB 1566 mnd-RB 702..1566 881..17 4325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
mnd-RD 2046 CG3297-RD 731..1595 881..17 4325 100 Minus
mnd-RA 2491 CG3297-RA 1176..2040 881..17 4325 100 Minus
mnd-RC 2376 CG3297-RC 1061..1925 881..17 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14990264..14990742 881..403 2395 100 Minus
3L 28110227 3L 14990829..14991216 404..17 1940 100 Minus
Blast to na_te.dros performed on 2015-02-01 10:19:48 has no hits.

BS10138.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:32 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
mnd-PC 636..1500 17..881 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:15 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3297-PB 702..1566 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:17 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
mnd-RA 1176..2044 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:16 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
mnd-RC 1061..1929 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:16 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14990264..14990741 404..881 100 -> Minus
3L 14990830..14991220 12..403 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:17 Download gff for BS10138.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14983364..14983841 404..881 100 -> Minus
arm_3L 14983930..14984320 12..403 99   Minus

BS10138.5prime Sequence

814 bp (775 high quality bases) assembled on 2006-04-19

> BS10138.5prime
GAAGTTATCAGTCGACATGGCGCGAGTTCAGGCCAGCGACTCGTTGATTC
CCCGCCAGGTGTTCGAGGTTCCTCCGGCGGAACCCAATAATTCCACGGCG
GACAGCGGCAGTCAGGGTTCCGGGGTAAAGCTAAAGAAGCAGATCGGCCT
GCTCGATGGAGTGGCCATCATCGTTGGTGTAATTGTCGGATCCGGCATCT
TCGTGAGTCCCAAGGGAGTGCTCAAGTTCTCCGGCTCCATAGGACAATCC
CTCATCGTTTGGGTCCTCAGCGGAGTGCTCAGCATGGTGGGCGCCCTATG
CTACGCCGAATTGGGCACGATGATACCCAAATCAGGCGGAGATTATGCCT
ATATAGGCACTGCATTTGGTCCTCTGCCTGCGTTCCTTTATCTGTGGGTG
GCCCTGCTGATCCTGGTGCCCACGGGCAATGCGATTACGGCTCTGACTTT
TGCCATATATCTGCTGAAACCTTTTTGGCCTTCCTGCGACGCGCCCATTG
AAGCTGTTCAGCTGCTGGCGGCTGCCATGATATGTGTGCTGACGCTTATC
AATTGCTATAATGTTAAGTGGGTTACGCGTGTGACGGACATCTTTACGGG
CACCAAGGTGGTTGCCCTCCTGGTGATCGTTGGCGCCGGAGTCTGGTGGT
TGTTCGATGGAAACACAGAGCACTGGGATAATCCCTTCTCGGGAGGCCTT
CAAGATCCTGGATATATAGCCCTGGCCTTCTATAGCGGCCTCTTCTCGTA
CTCCGGCTGGAACTATTTGAACTTTGTAACAGAGGAGCTCAAGGATCCGT
ACCGAAACCTGCCC

BS10138.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3297-PC 1500 mnd-RC 1..798 17..814 3990 100 Plus
CG3297-PA 1500 mnd-RA 1..798 17..814 3990 100 Plus
CG3297-PB 1566 mnd-RB 67..864 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
mnd-RD 2046 CG3297-RD 96..893 17..814 3990 100 Plus
mnd-RA 2491 CG3297-RA 541..1338 17..814 3990 100 Plus
mnd-RC 2376 CG3297-RC 426..1223 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14987952..14988250 17..315 1495 100 Plus
3L 28110227 3L 14990146..14990426 534..814 1405 100 Plus
3L 28110227 3L 14989848..14990069 314..535 1110 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:42:50 has no hits.

BS10138.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:33 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
mnd-PC 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:17 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3297-PB 67..864 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:50 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
mnd-RC 426..1223 17..814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:16:52 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
mnd-RC 426..1223 17..814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:16:52 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14987952..14988249 17..314 100 -> Plus
3L 14989849..14990067 315..533 100 -> Plus
3L 14990146..14990426 534..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:50 Download gff for BS10138.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14981052..14981349 17..314 100 -> Plus
arm_3L 14982949..14983167 315..533 100 -> Plus
arm_3L 14983246..14983526 534..814 100   Plus

BS10138.complete Sequence

1532 bp (1532 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636572

> BS10138.complete
GAAGTTATCAGTCGACATGGCGCGAGTTCAGGCCAGCGACTCGTTGATTC
CCCGCCAGGTGTTCGAGGTTCCTCCGGCGGAACCCAATAATTCCACGGCG
GACAGCGGCAGTCAGGGTTCCGGGGTAAAGCTAAAGAAGCAGATCGGCCT
GCTCGATGGAGTGGCCATCATCGTTGGTGTAATTGTCGGATCCGGCATCT
TCGTGAGTCCCAAGGGAGTGCTCAAGTTCTCCGGCTCCATAGGACAATCC
CTCATCGTTTGGGTCCTCAGCGGAGTGCTCAGCATGGTGGGCGCCCTATG
CTACGCCGAATTGGGCACGATGATACCCAAATCAGGCGGAGATTATGCCT
ATATAGGCACTGCATTTGGTCCTCTGCCTGCGTTCCTTTATCTGTGGGTG
GCCCTGCTGATCCTGGTGCCCACGGGCAATGCGATTACGGCTCTGACTTT
TGCCATATATCTGCTGAAACCTTTTTGGCCTTCCTGCGACGCGCCCATTG
AAGCTGTTCAGCTGCTGGCGGCTGCCATGATATGTGTGCTGACGCTTATC
AATTGCTATAATGTTAAGTGGGTTACGCGTGTGACGGACATCTTTACGGG
CACCAAGGTGGTTGCCCTCCTGGTGATCGTTGGCGCCGGAGTCTGGTGGT
TGTTCGATGGAAACACAGAGCACTGGGATAATCCCTTCTCGGGAGGCCTT
CAAGATCCTGGATATATAGCCCTGGCCTTCTATAGCGGCCTCTTCTCGTA
CTCCGGCTGGAACTATTTGAACTTTGTAACAGAGGAGCTCAAGGATCCGT
ACCGAAACCTGCCCAAGGCCATTTGCATCTCAATGCCGGTGGTCACGGTC
ATCTATATGATCACGAATATTGCATACTTTTCGGTTCTCTCGCCAGACGA
GATCCTTTCGTCAGATGCAGTGGCAGTCACGTTTGGCGACAAGATGCTGG
GGTATATGTCCTGGATTATGCCCTTCGCTGTGGCCTGCTCCACTTTTGGT
TCGCTGAATGGAGCGATCTTCGCGTCCTCGCGACTTTTCTTCGTCGGTGC
AAGGAATGGTCACCTGCCGGCCGCCATTTCGCTGATTAACGTTAATTGCC
TGACACCTGTGCCCTCGCTGATATTCCTGGGCGTGCTCACCTTGCTGCTG
CTGTTCATCGAGGACGTCTACGTACTAATCAACTACGTCAGCTACGTGGA
GGCGTTGTTCACGCTGATCTCGGTATCCGGACTGCTGTGGATGCGCTACA
AGCAACCCAAGACGGAGCGACCCATCAAGGTCAACTTGGCGCTGCCCATC
ATCTATCTGATCGTCTGCCTGTTCCTGGTCATCTTCTCTTGCACGCAGAC
GCCATATGTGGTAGGAATCGGGACGATCATTATACTGTCTGGAATTCCGG
TCTACTACCTGACCATCCACAAACCGGTCAAATGGCTGGCGGACACTTCG
CAGGCGATCAACCTGTGGTGCTCCAAATTCTTCATCTGTATGCCCAACCA
GGAGAAGTTCGACTAGAAGCTTTCTAGACCAT

BS10138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
mnd-RD 1500 CG3297-PD 1..1500 17..1516 7500 100 Plus
mnd-RA 1500 CG3297-PA 1..1500 17..1516 7500 100 Plus
mnd-RC 1500 CG3297-PC 1..1500 17..1516 7500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
mnd-RD 2046 CG3297-RD 96..1595 17..1516 7500 100 Plus
mnd-RA 2491 CG3297-RA 541..2040 17..1516 7500 100 Plus
mnd-RC 2376 CG3297-RC 426..1925 17..1516 7500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14990146..14990742 534..1130 2985 100 Plus
3L 28110227 3L 14990829..14991216 1129..1516 1940 100 Plus
3L 28110227 3L 14987952..14988250 17..315 1495 100 Plus
3L 28110227 3L 14989848..14990069 314..535 1110 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:21 has no hits.

BS10138.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:55 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
mnd-RD 1..1500 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:23 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
mnd-RD 81..1584 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:16 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
mnd-RC 426..1925 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:55 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
mnd-RD 81..1584 17..1521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:56 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
mnd-RC 426..1925 17..1516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:56 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14987952..14988249 17..314 100 -> Plus
3L 14989849..14990067 315..533 100 -> Plus
3L 14990146..14990741 534..1129 100 -> Plus
3L 14990830..14991216 1130..1516 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:16 Download gff for BS10138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14983930..14984316 1130..1516 100   Plus
arm_3L 14981052..14981349 17..314 100 -> Plus
arm_3L 14982949..14983167 315..533 100 -> Plus
arm_3L 14983246..14983841 534..1129 100 -> Plus

BS10138.pep Sequence

Translation from 16 to 1515

> BS10138.pep
MARVQASDSLIPRQVFEVPPAEPNNSTADSGSQGSGVKLKKQIGLLDGVA
IIVGVIVGSGIFVSPKGVLKFSGSIGQSLIVWVLSGVLSMVGALCYAELG
TMIPKSGGDYAYIGTAFGPLPAFLYLWVALLILVPTGNAITALTFAIYLL
KPFWPSCDAPIEAVQLLAAAMICVLTLINCYNVKWVTRVTDIFTGTKVVA
LLVIVGAGVWWLFDGNTEHWDNPFSGGLQDPGYIALAFYSGLFSYSGWNY
LNFVTEELKDPYRNLPKAICISMPVVTVIYMITNIAYFSVLSPDEILSSD
AVAVTFGDKMLGYMSWIMPFAVACSTFGSLNGAIFASSRLFFVGARNGHL
PAAISLINVNCLTPVPSLIFLGVLTLLLLFIEDVYVLINYVSYVEALFTL
ISVSGLLWMRYKQPKTERPIKVNLALPIIYLIVCLFLVIFSCTQTPYVVG
IGTIIILSGIPVYYLTIHKPVKWLADTSQAINLWCSKFFICMPNQEKFD*

BS10138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
mnd-PD 499 CG3297-PD 1..499 1..499 2591 100 Plus
mnd-PA 499 CG3297-PA 1..499 1..499 2591 100 Plus
mnd-PC 499 CG3297-PC 1..499 1..499 2591 100 Plus
gb-PB 517 CG6070-PB 35..516 20..497 1334 53.6 Plus
gb-PA 517 CG6070-PA 35..516 20..497 1334 53.6 Plus