Clone BS10141 Report

Search the DGRC for BS10141

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptTRAM-RA
Protein status:BS10141.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10141.3prime Sequence

886 bp (835 high quality bases) assembled on 2006-04-19

> BS10141.3prime
ATGGTCTAGAAAGCTTTCACTTGAGCTTCTGCTTGATGGGACTGGGCGAG
GTCTGGTCCGCCTCAGGCAGGTCGCTCTCCTTCTTGCGCTTCACCTTGTC
CTTGGGCGTCTTGGCTGGCTTTTTGGTCTGCAGCGCCAGCTTGGCCTCCC
GCTTGGCCTCCTTCTTGGCCTCGCGCTTGGCGCGCAGCTGCTCCGTGATG
AAGGAGAAGACCAGGTAGCCCTGCAGGGCGATCAGGCCGCCCAAGGCCAG
CAGGGATCGCACACCCCCGATGCCGTAGTACAGCGTGAGCACACCGATCA
CGGACGTAGCGAAGCGGATCAGGAAAAAGACGGCATTGTTCACCACCCGC
AGCTTGGCCAGTCGCTCCTCGCGGTCGAACACGCCGATCAGCTGGAAGAC
GTGCGACAGCAGCTCGCTGAAGTAGTGCAGCGTGAGCAGCACGAGGGCCA
GGCGCTGGAAGCTAAGCGTGTAGGCCAGGACGATCAGGGTGAAGCCGCTG
ATCGAGTGCACGATCTTGGGCTGCTGCTCCTCCTTGGTCTTGATCTTCTG
GAAGTAGAGCTCCGGCAGCATGTGTAGGTAGTAGGCCAGCTGCACCACAA
AGTAGAACTTGTGCAGAAAGCTCATGGGATGGTCGGGGAAGCCCTCCCAC
AGCTGGGCCACCTGTCCGAGGTAGCCCTCCTTCAGCAGCACGTGGGCGCC
CCAGACGAAGGAGAGCAGGTAGAAGGCCACCAGTTGGCCGGACTCGTTGA
AGCGGGCCAGCTTGAACTTGGACAGGTGTAGTTTTTTGCTGATCTTGTCC
AGCACGAACTCCTGGATGATCGCGTGCATGATTATGCAGGTCAGCGTGTA
GAAGAATATCGCGCAGTAATCCTTGATGCCCGCGAT

BS10141.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11642-PB 1107 CG11642-RB 238..1107 886..17 4325 99.8 Minus
CG11642-PA 1107 CG11642-RA 238..1107 886..17 4325 99.8 Minus
CG11642-PC 1107 CG11642-RC 238..1107 886..17 4325 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 420..1293 886..13 4340 99.8 Minus
TRAM-RD 1623 CG11642-RD 387..1260 886..13 4340 99.8 Minus
TRAM-RC 1896 CG11642-RC 660..1533 886..13 4340 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936586..937459 886..13 4340 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 18:22:08 has no hits.

BS10141.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:36 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 238..1107 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:21 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 238..1107 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:32 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 660..1537 9..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:48 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 660..1537 9..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:48 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
X 936586..937463 9..886 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:32 Download gff for BS10141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 830619..831496 9..886 99   Minus

BS10141.5prime Sequence

951 bp (779 high quality bases) assembled on 2006-04-19

> BS10141.5prime
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGGATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
A

BS10141.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11642-PB 1107 CG11642-RB 1..935 17..951 4650 99.8 Plus
CG11642-PA 1107 CG11642-RA 1..935 17..951 4650 99.8 Plus
CG11642-PC 1107 CG11642-RC 1..935 17..951 4650 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 183..1117 17..951 4660 99.9 Plus
TRAM-RD 1623 CG11642-RD 150..1084 17..951 4660 99.9 Plus
TRAM-RC 1896 CG11642-RC 423..1357 17..951 4660 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936349..937283 17..951 4660 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 23:36:13 has no hits.

BS10141.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:37 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 1..934 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:23 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 1..934 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:23:32 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1356 10..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:40 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1356 10..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:40 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
X 936345..937282 10..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:23:32 Download gff for BS10141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 830378..831315 10..950 99   Plus

BS10141.complete Sequence

1139 bp (1139 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638829

> BS10141.complete
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
AGCTGCGCGCCAAGCGCGAGGCCAAGAAGGAGGCCAAGCGGGAGGCCAAG
CTGGCGCTGCAGACCAAAAAGCCAGCCAAGACGCCCAAGGACAAGGTGAA
GCGCAAGAAGGAGAGCGACCTGCCTGAGGCGGACCAGACCTCGCCCAGTC
CCATCAAGCAGAAGCTCAAGTGAAAGCTTTCTAGACCAT

BS10141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1107 CG11642-PE 1..1107 17..1123 5535 100 Plus
TRAM-RD 1107 CG11642-PD 1..1107 17..1123 5535 100 Plus
TRAM-RC 1107 CG11642-PC 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 183..1293 17..1127 5540 99.9 Plus
TRAM-RD 1623 CG11642-RD 150..1260 17..1127 5540 99.9 Plus
TRAM-RC 1896 CG11642-RC 423..1533 17..1127 5540 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936349..937459 17..1127 5540 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 20:10:25 has no hits.

BS10141.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:56 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:25 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1537 10..1131 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:32 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 423..1528 17..1122 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:57 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1537 10..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:25 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 423..1528 17..1122 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:25 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
X 936349..937454 17..1122 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:32 Download gff for BS10141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 830382..831487 17..1122 100   Plus

BS10141.pep Sequence

Translation from 16 to 1122

> BS10141.pep
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLK*

BS10141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-PE 368 CG11642-PE 1..368 1..368 1876 100 Plus
TRAM-PD 368 CG11642-PD 1..368 1..368 1876 100 Plus
TRAM-PC 368 CG11642-PC 1..368 1..368 1876 100 Plus
TRAM-PA 368 CG11642-PA 1..368 1..368 1876 100 Plus
TRAM-PB 368 CG11642-PB 1..368 1..368 1876 100 Plus