Clone Sequence Records
BS10141.3prime Sequence
886 bp (835 high quality bases) assembled on 2006-04-19
> BS10141.3prime
ATGGTCTAGAAAGCTTTCACTTGAGCTTCTGCTTGATGGGACTGGGCGAG
GTCTGGTCCGCCTCAGGCAGGTCGCTCTCCTTCTTGCGCTTCACCTTGTC
CTTGGGCGTCTTGGCTGGCTTTTTGGTCTGCAGCGCCAGCTTGGCCTCCC
GCTTGGCCTCCTTCTTGGCCTCGCGCTTGGCGCGCAGCTGCTCCGTGATG
AAGGAGAAGACCAGGTAGCCCTGCAGGGCGATCAGGCCGCCCAAGGCCAG
CAGGGATCGCACACCCCCGATGCCGTAGTACAGCGTGAGCACACCGATCA
CGGACGTAGCGAAGCGGATCAGGAAAAAGACGGCATTGTTCACCACCCGC
AGCTTGGCCAGTCGCTCCTCGCGGTCGAACACGCCGATCAGCTGGAAGAC
GTGCGACAGCAGCTCGCTGAAGTAGTGCAGCGTGAGCAGCACGAGGGCCA
GGCGCTGGAAGCTAAGCGTGTAGGCCAGGACGATCAGGGTGAAGCCGCTG
ATCGAGTGCACGATCTTGGGCTGCTGCTCCTCCTTGGTCTTGATCTTCTG
GAAGTAGAGCTCCGGCAGCATGTGTAGGTAGTAGGCCAGCTGCACCACAA
AGTAGAACTTGTGCAGAAAGCTCATGGGATGGTCGGGGAAGCCCTCCCAC
AGCTGGGCCACCTGTCCGAGGTAGCCCTCCTTCAGCAGCACGTGGGCGCC
CCAGACGAAGGAGAGCAGGTAGAAGGCCACCAGTTGGCCGGACTCGTTGA
AGCGGGCCAGCTTGAACTTGGACAGGTGTAGTTTTTTGCTGATCTTGTCC
AGCACGAACTCCTGGATGATCGCGTGCATGATTATGCAGGTCAGCGTGTA
GAAGAATATCGCGCAGTAATCCTTGATGCCCGCGAT
BS10141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11642-PB | 1107 | CG11642-RB | 238..1107 | 886..17 | 4325 | 99.8 | Minus |
CG11642-PA | 1107 | CG11642-RA | 238..1107 | 886..17 | 4325 | 99.8 | Minus |
CG11642-PC | 1107 | CG11642-RC | 238..1107 | 886..17 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 420..1293 | 886..13 | 4340 | 99.8 | Minus |
TRAM-RD | 1623 | CG11642-RD | 387..1260 | 886..13 | 4340 | 99.8 | Minus |
TRAM-RC | 1896 | CG11642-RC | 660..1533 | 886..13 | 4340 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936586..937459 | 886..13 | 4340 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:22:08 has no hits.
BS10141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:36 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 238..1107 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:21 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 238..1107 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:32 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 660..1537 | 9..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:48 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 660..1537 | 9..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:48 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936586..937463 | 9..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:32 Download gff for
BS10141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830619..831496 | 9..886 | 99 | | Minus |
BS10141.5prime Sequence
951 bp (779 high quality bases) assembled on 2006-04-19
> BS10141.5prime
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGGATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
A
BS10141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11642-PB | 1107 | CG11642-RB | 1..935 | 17..951 | 4650 | 99.8 | Plus |
CG11642-PA | 1107 | CG11642-RA | 1..935 | 17..951 | 4650 | 99.8 | Plus |
CG11642-PC | 1107 | CG11642-RC | 1..935 | 17..951 | 4650 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 183..1117 | 17..951 | 4660 | 99.9 | Plus |
TRAM-RD | 1623 | CG11642-RD | 150..1084 | 17..951 | 4660 | 99.9 | Plus |
TRAM-RC | 1896 | CG11642-RC | 423..1357 | 17..951 | 4660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936349..937283 | 17..951 | 4660 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:36:13 has no hits.
BS10141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:37 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:23 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:23:32 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1356 | 10..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:40 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1356 | 10..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:40 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936345..937282 | 10..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:23:32 Download gff for
BS10141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830378..831315 | 10..950 | 99 | | Plus |
BS10141.complete Sequence
1139 bp (1139 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638829
> BS10141.complete
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
AGCTGCGCGCCAAGCGCGAGGCCAAGAAGGAGGCCAAGCGGGAGGCCAAG
CTGGCGCTGCAGACCAAAAAGCCAGCCAAGACGCCCAAGGACAAGGTGAA
GCGCAAGAAGGAGAGCGACCTGCCTGAGGCGGACCAGACCTCGCCCAGTC
CCATCAAGCAGAAGCTCAAGTGAAAGCTTTCTAGACCAT
BS10141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1107 | CG11642-PE | 1..1107 | 17..1123 | 5535 | 100 | Plus |
TRAM-RD | 1107 | CG11642-PD | 1..1107 | 17..1123 | 5535 | 100 | Plus |
TRAM-RC | 1107 | CG11642-PC | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 183..1293 | 17..1127 | 5540 | 99.9 | Plus |
TRAM-RD | 1623 | CG11642-RD | 150..1260 | 17..1127 | 5540 | 99.9 | Plus |
TRAM-RC | 1896 | CG11642-RC | 423..1533 | 17..1127 | 5540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936349..937459 | 17..1127 | 5540 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:10:25 has no hits.
BS10141.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:56 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:25 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1537 | 10..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:32 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 423..1528 | 17..1122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:57 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1537 | 10..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:25 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 423..1528 | 17..1122 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:25 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936349..937454 | 17..1122 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:32 Download gff for
BS10141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830382..831487 | 17..1122 | 100 | | Plus |
BS10141.pep Sequence
Translation from 16 to 1122
> BS10141.pep
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLK*
BS10141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-PE | 368 | CG11642-PE | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PD | 368 | CG11642-PD | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PC | 368 | CG11642-PC | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PA | 368 | CG11642-PA | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PB | 368 | CG11642-PB | 1..368 | 1..368 | 1876 | 100 | Plus |