Clone Sequence Records
BS10142.3prime Sequence
896 bp (854 high quality bases) assembled on 2006-04-19
> BS10142.3prime
ATGGTCTAGAAAGCTTTTATTGCTGATTATTGGGATTCATTTGACCATTG
ACAATAGGTAAGAAATATGGATGGGCCATTGCTTCGCGAGCTGTGAGTCG
ATCAACGTGATCATAGCGTAAAAGTTTATCAAGAAAGTCTAGTGCTTCAG
GAGAAACTAGATGTTGGTTGTCAGAATGGACAAATCTTTCCCATCGCTTT
CGTGAGTGACGCTGTAGAATGTCGTGAAATCTTGGATCGAGGTCAATATT
GTATTTATCCAAATATGCGTAGAGTTCTTCGGTGCCCAGCACCTTGGCAA
TGCGTACCAATTGATCATAGTTATCATGTCCGTGGAAAAATGGCTCTTTT
CGGAATATCATCGACGCCAACATACAACCTAGTGACCACATATCCAGTGA
GTAATCATACATCTGGTAATCTACCAGTAATTCGGGACCTTTAAAGTATC
TCGAAGCCACACGAACATTATATTCTTGACCAGGATGGTAAAATTCGGCA
AGTCCCCAATCTATAAGGCGCAATTTTCGATTTTCGTGATCTATCATAAC
ATTGTGGGGCTTTACATCACGATGCATTATTCCCATGCTGTGGCAGTAGT
CAAGTGCCTTAAGAAGCTCAAACAAGTAGTAACGAATCTCATAATCAGTT
AATGTTTGGTAAAGTTGCTTGAAATCTGTGTTGTTGACGTGCTCAAAAAT
CAACGCTGGTGTTCGAGAAACTGGGTCCTTGACAACGGCTAANAGTGTTA
TTATATTAGTTCCTCCACGCAAGTTCTCCAAAATTTTGATTTCACGCTTT
ATCTTCTTTTTTTTAACAGGTTTCAGAATTTTAACAACGCACTTTTCCGT
GGTCGTAATATTAATGGCCTCGAAGACCTCAGAATACTTTCCACGG
BS10142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17520-PA | 1011 | CkIIalpha-RA | 132..1011 | 896..17 | 4381 | 99.8 | Minus |
CG17520-PB | 1011 | CkIIalpha-RB | 132..1011 | 896..17 | 4381 | 99.8 | Minus |
CG17520-PC | 1011 | CkIIalpha-RC | 132..1011 | 896..17 | 4381 | 99.8 | Minus |
CG17520-PD | 1011 | CkIIalpha-RD | 132..1011 | 896..17 | 4381 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 459..1338 | 896..17 | 4389 | 99.9 | Minus |
CkIIalpha-RC | 1423 | CG17520-RC | 346..1225 | 896..17 | 4389 | 99.9 | Minus |
CkIIalpha-RB | 1561 | CG17520-RB | 484..1363 | 896..17 | 4389 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102383..23103262 | 896..17 | 4389 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 04:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 789..727 | 121 | 71.2 | Minus |
BS10142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:38 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PC | 132..1011 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:24 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PD | 132..1011 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:50 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 484..1370 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:18 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 484..1370 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:18 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102383..23103269 | 10..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:50 Download gff for
BS10142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095483..23096369 | 10..896 | 99 | | Minus |
BS10142.5prime Sequence
947 bp (840 high quality bases) assembled on 2006-04-19
> BS10142.5prime
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACAACATCTAGTTTCTCCCTGAGCA
CTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACT
BS10142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17520-PA | 1011 | CkIIalpha-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17520-PB | 1011 | CkIIalpha-RB | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17520-PC | 1011 | CkIIalpha-RC | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17520-PD | 1011 | CkIIalpha-RD | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17520-PA | 1011 | CkIIalpha-RA | 882..932 | 897..947 | 255 | 100 | Plus |
CG17520-PB | 1011 | CkIIalpha-RB | 882..932 | 897..947 | 255 | 100 | Plus |
CG17520-PC | 1011 | CkIIalpha-RC | 882..932 | 897..947 | 255 | 100 | Plus |
CG17520-PD | 1011 | CkIIalpha-RD | 882..932 | 897..947 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 328..1259 | 17..947 | 4590 | 99.7 | Plus |
CkIIalpha-RC | 1423 | CG17520-RC | 215..1146 | 17..947 | 4590 | 99.7 | Plus |
CkIIalpha-RB | 1561 | CG17520-RB | 353..1284 | 17..947 | 4590 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102252..23103183 | 17..947 | 4565 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 00:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 255..317 | 128 | 72.7 | Plus |
BS10142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:39 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PC | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:25 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PC | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:30 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 347..1284 | 10..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:51 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 347..1284 | 10..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:51 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102246..23103183 | 10..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:30 Download gff for
BS10142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095346..23096283 | 10..947 | 99 | | Plus |
BS10142.complete Sequence
1043 bp (1043 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636573
> BS10142.complete
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAGCAATGGCCCATCCATATTTCTTACCTATTGTCAATGGT
CAAATGAATCCCAATAATCAGCAATAAAAGCTTTCTAGACCAT
BS10142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1011 | CG17520-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CkIIalpha-RC | 1011 | CG17520-PC | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CkIIalpha-RB | 1011 | CG17520-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 328..1338 | 17..1027 | 5055 | 100 | Plus |
CkIIalpha-RC | 1423 | CG17520-RC | 215..1225 | 17..1027 | 5055 | 100 | Plus |
CkIIalpha-RB | 1561 | CG17520-RB | 353..1363 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102252..23103262 | 17..1027 | 5055 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 255..317 | 128 | 72.7 | Plus |
BS10142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:58 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:27 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 269..1292 | 10..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:27 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 353..1361 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:58 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 269..1292 | 10..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:18 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 353..1361 | 17..1025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:18 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102252..23103260 | 17..1025 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:27 Download gff for
BS10142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095352..23096360 | 17..1025 | 100 | | Plus |
BS10142.pep Sequence
Translation from 16 to 1026
> BS10142.pep
MTLPSAARVYTDVNAHKPDEYWDYENYVVDWGNQDDYQLVRKLGRGKYSE
VFEAINITTTEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLLAVVK
DPVSRTPALIFEHVNNTDFKQLYQTLTDYEIRYYLFELLKALDYCHSMGI
MHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPEL
LVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE
ELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLD
KLLRYDHVDRLTAREAMAHPYFLPIVNGQMNPNNQQ*
BS10142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-PA | 336 | CG17520-PA | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PC | 336 | CG17520-PC | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PB | 336 | CG17520-PB | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PD | 336 | CG17520-PD | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PE | 336 | CG17520-PE | 1..336 | 1..336 | 1807 | 100 | Plus |