Clone BS10142 Report

Search the DGRC for BS10142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIalpha-RA
Protein status:BS10142.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10142.3prime Sequence

896 bp (854 high quality bases) assembled on 2006-04-19

> BS10142.3prime
ATGGTCTAGAAAGCTTTTATTGCTGATTATTGGGATTCATTTGACCATTG
ACAATAGGTAAGAAATATGGATGGGCCATTGCTTCGCGAGCTGTGAGTCG
ATCAACGTGATCATAGCGTAAAAGTTTATCAAGAAAGTCTAGTGCTTCAG
GAGAAACTAGATGTTGGTTGTCAGAATGGACAAATCTTTCCCATCGCTTT
CGTGAGTGACGCTGTAGAATGTCGTGAAATCTTGGATCGAGGTCAATATT
GTATTTATCCAAATATGCGTAGAGTTCTTCGGTGCCCAGCACCTTGGCAA
TGCGTACCAATTGATCATAGTTATCATGTCCGTGGAAAAATGGCTCTTTT
CGGAATATCATCGACGCCAACATACAACCTAGTGACCACATATCCAGTGA
GTAATCATACATCTGGTAATCTACCAGTAATTCGGGACCTTTAAAGTATC
TCGAAGCCACACGAACATTATATTCTTGACCAGGATGGTAAAATTCGGCA
AGTCCCCAATCTATAAGGCGCAATTTTCGATTTTCGTGATCTATCATAAC
ATTGTGGGGCTTTACATCACGATGCATTATTCCCATGCTGTGGCAGTAGT
CAAGTGCCTTAAGAAGCTCAAACAAGTAGTAACGAATCTCATAATCAGTT
AATGTTTGGTAAAGTTGCTTGAAATCTGTGTTGTTGACGTGCTCAAAAAT
CAACGCTGGTGTTCGAGAAACTGGGTCCTTGACAACGGCTAANAGTGTTA
TTATATTAGTTCCTCCACGCAAGTTCTCCAAAATTTTGATTTCACGCTTT
ATCTTCTTTTTTTTAACAGGTTTCAGAATTTTAACAACGCACTTTTCCGT
GGTCGTAATATTAATGGCCTCGAAGACCTCAGAATACTTTCCACGG

BS10142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17520-PA 1011 CkIIalpha-RA 132..1011 896..17 4381 99.8 Minus
CG17520-PB 1011 CkIIalpha-RB 132..1011 896..17 4381 99.8 Minus
CG17520-PC 1011 CkIIalpha-RC 132..1011 896..17 4381 99.8 Minus
CG17520-PD 1011 CkIIalpha-RD 132..1011 896..17 4381 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 459..1338 896..17 4389 99.9 Minus
CkIIalpha-RC 1423 CG17520-RC 346..1225 896..17 4389 99.9 Minus
CkIIalpha-RB 1561 CG17520-RB 484..1363 896..17 4389 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102383..23103262 896..17 4389 99.9 Minus
Blast to na_te.dros performed 2015-02-12 04:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 789..727 121 71.2 Minus

BS10142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:38 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PC 132..1011 17..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:24 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PD 132..1011 17..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:50 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 484..1370 10..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:18 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 484..1370 10..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:18 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 23102383..23103269 10..896 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:50 Download gff for BS10142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095483..23096369 10..896 99   Minus

BS10142.5prime Sequence

947 bp (840 high quality bases) assembled on 2006-04-19

> BS10142.5prime
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACAACATCTAGTTTCTCCCTGAGCA
CTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACT

BS10142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17520-PA 1011 CkIIalpha-RA 1..861 17..877 4305 100 Plus
CG17520-PB 1011 CkIIalpha-RB 1..861 17..877 4305 100 Plus
CG17520-PC 1011 CkIIalpha-RC 1..861 17..877 4305 100 Plus
CG17520-PD 1011 CkIIalpha-RD 1..861 17..877 4305 100 Plus
CG17520-PA 1011 CkIIalpha-RA 882..932 897..947 255 100 Plus
CG17520-PB 1011 CkIIalpha-RB 882..932 897..947 255 100 Plus
CG17520-PC 1011 CkIIalpha-RC 882..932 897..947 255 100 Plus
CG17520-PD 1011 CkIIalpha-RD 882..932 897..947 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 328..1259 17..947 4590 99.7 Plus
CkIIalpha-RC 1423 CG17520-RC 215..1146 17..947 4590 99.7 Plus
CkIIalpha-RB 1561 CG17520-RB 353..1284 17..947 4590 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102252..23103183 17..947 4565 99.6 Plus
Blast to na_te.dros performed 2015-02-12 00:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 255..317 128 72.7 Plus

BS10142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:39 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PC 1..932 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:25 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PC 1..932 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:30 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 347..1284 10..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:51 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 347..1284 10..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:51 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23102246..23103183 10..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:30 Download gff for BS10142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095346..23096283 10..947 99   Plus

BS10142.complete Sequence

1043 bp (1043 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636573

> BS10142.complete
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAGCAATGGCCCATCCATATTTCTTACCTATTGTCAATGGT
CAAATGAATCCCAATAATCAGCAATAAAAGCTTTCTAGACCAT

BS10142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1011 CG17520-PA 1..1011 17..1027 5055 100 Plus
CkIIalpha-RC 1011 CG17520-PC 1..1011 17..1027 5055 100 Plus
CkIIalpha-RB 1011 CG17520-PB 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 328..1338 17..1027 5055 100 Plus
CkIIalpha-RC 1423 CG17520-RC 215..1225 17..1027 5055 100 Plus
CkIIalpha-RB 1561 CG17520-RB 353..1363 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102252..23103262 17..1027 5055 100 Plus
Blast to na_te.dros performed 2014-11-27 10:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 255..317 128 72.7 Plus

BS10142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:58 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:27 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 269..1292 10..1034 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:27 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 353..1361 17..1025 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:58 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 269..1292 10..1034 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:18 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 353..1361 17..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:18 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23102252..23103260 17..1025 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:27 Download gff for BS10142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095352..23096360 17..1025 100   Plus

BS10142.pep Sequence

Translation from 16 to 1026

> BS10142.pep
MTLPSAARVYTDVNAHKPDEYWDYENYVVDWGNQDDYQLVRKLGRGKYSE
VFEAINITTTEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLLAVVK
DPVSRTPALIFEHVNNTDFKQLYQTLTDYEIRYYLFELLKALDYCHSMGI
MHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPEL
LVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE
ELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLD
KLLRYDHVDRLTAREAMAHPYFLPIVNGQMNPNNQQ*

BS10142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-PA 336 CG17520-PA 1..336 1..336 1807 100 Plus
CkIIalpha-PC 336 CG17520-PC 1..336 1..336 1807 100 Plus
CkIIalpha-PB 336 CG17520-PB 1..336 1..336 1807 100 Plus
CkIIalpha-PD 336 CG17520-PD 1..336 1..336 1807 100 Plus
CkIIalpha-PE 336 CG17520-PE 1..336 1..336 1807 100 Plus