Clone Sequence Records
BS10145.3prime Sequence
908 bp (866 high quality bases) assembled on 2006-04-19
> BS10145.3prime
ATGGTCTAGAAAGCTTTCAGCTTTGCTTCTGGAGCTTGTAAGTCGGCATG
AACGGAATATAGTAGGTCCACTTCCAACGACGAATGGCATCCATGCCAAG
TGGAAAATCGTAGTCGGTGGCTGTGCCATCATTAACATTATCATCGCCCA
GGGGCATCTCGTTTGCCCAGTCGATTAGGCCCCTCTCCTCCGGCGTCCCT
GGGATTATATTGTCCAGCAAGCATCCCAAAACTCCACCCACGAGAATTGT
AGTGCCCAGTAGCACCGATAACGTTGAGTCCACGGTCTTGTTTCCGGTGT
CAATAGCTCCAGGGTTCTTCTGCATCCAGCGGCACAATACCATCGGGAAA
AATATTGAGAGCCCCAATATGTAAAGATTCCTTGCGGATCGCAGATCCAC
ATACTGCAAGGTGGATAGCCCAAAAGCTATAATCATGCCAAACATCACAC
AAAAGATTCCGCCCACCACCGAGTCGGGAATGAGAATGAAAATGGCTCCA
AACTTTCCAATTACCCCCTGGAGGACCATTATCAAGGCAGCCCACTGTAT
TACACGTCGGGATCCAATCTTGGTGACCCCGATGGCGCCAACATTCTCTC
CAAAGGTATTGGTTCCATTTCCAGCTCCCCACAGACCGGCGAGGACAGTG
CCAAAGCCCTCGGTACCGATCCCGCGATTGATCGCATGGAGCGGAGGCGA
GTGGGCGCCGGACATCTGTGACACCGTTGGATAGTAACTAAGTGACTCCA
CCGTACAGGCAAGTACTCCGGCCAACATGCCAAGCACGCCGGACAGCGTC
ACCGATGGCCAGCCAAACTGTCCCGGATACGGGACATAGAACCACTTTGC
ACTGGTCAGCACATTCAGGCGAACATCGGTGCGAGAAGGATGTGACGGAG
GAAAGACA
BS10145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PA | 1722 | CG6293-RA | 831..1722 | 908..17 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 950..1841 | 908..17 | 4460 | 100 | Minus |
| CG6293-RA | 2144 | CG6293-RA | 950..1841 | 908..17 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10308566..10309119 | 17..570 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 10309182..10309521 | 569..908 | 1700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:55:19 has no hits.
BS10145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:45 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 832..1722 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:32 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 832..1722 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:31 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 951..1841 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:28 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 951..1841 | 17..907 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:28 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10308566..10309117 | 17..568 | 100 | <- | Plus |
| 3R | 10309182..10309520 | 569..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:31 Download gff for
BS10145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6134288..6134839 | 17..568 | 100 | <- | Plus |
| arm_3R | 6134904..6135242 | 569..907 | 100 | | Plus |
BS10145.5prime Sequence
898 bp (812 high quality bases) assembled on 2006-04-19
> BS10145.5prime
GAAGTTATCAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCA
CAGATGCTTCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAAT
GAGAAACCCAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATG
GTACTTGAGCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAG
CCATTGTTTCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGAT
GAGGACGCCAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGG
CATCGTTACCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTC
AGGGCGGAACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTG
CCGCAGTGGAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGC
TGAGCGGGAGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTA
TTGCCGTGTCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTG
GGAAAAATCCTTAAGTACGTAACTCCATTGACCATTGTACCCACTGTGTC
CCTGGTGGGTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGC
ATTGGGGCATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAA
ATAATGTCGAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGG
CTTGGAAATTCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGA
CCATCATGATAATGTGGGGTCTGTGCGGGATTCTGACTGCTACGGATGTC
TTTCCTCCGTCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTG
BS10145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PA | 1722 | CG6293-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1001 | 16..898 | 4400 | 99.9 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1001 | 16..898 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 669..50 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10309470..10309699 | 898..669 | 1135 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:15:08 has no hits.
BS10145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:46 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:34 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:38 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 110..1001 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:59 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 110..1001 | 8..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:59 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10309470..10309698 | 670..898 | 99 | <- | Minus |
| 3R | 10309899..10310518 | 50..669 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:38 Download gff for
BS10145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6135192..6135420 | 670..898 | 99 | <- | Minus |
| arm_3R | 6135621..6136240 | 50..669 | 100 | <- | Minus |
BS10145.complete Sequence
1754 bp assembled on 2007-10-25
GenBank Submission: FJ636574
> BS10145.complete
GAAGTTATCAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCA
CAGATGCTTCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAAT
GAGAAACCCAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATG
GTACTTGAGCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAG
CCATTGTTTCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGAT
GAGGACGCCAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGG
CATCGTTACCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTC
AGGGCGGAACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTG
CCGCAGTGGAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGC
TGAGCGGGAGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTA
TTGCCGTGTCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTG
GGAAAAATCCTTAAGTACGTAACTCCATTGACCATTGTACCCACTGTGTC
CCTGGTGGGTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGC
ATTGGGGCATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAA
ATAATGTCGAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGG
CTTGGAAATTCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGA
CCATCATGATAATGTGGGGTCTGTGCGGGATTCTGACTGCTACGGATGTC
TTTCCTCCGTCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTGAC
CAGTGCAAAGTGGTTCTATGTCCCGTATCCGGGACAGTTTGGCTGGCCAT
CGGTGACGCTGTCCGGCGTGCTTGGCATGTTGGCCGGAGTACTTGCCTGT
ACGGTGGAGTCACTTAGTTACTATCCAACGGTGTCACAGATGTCCGGCGC
CCACTCGCCTCCGCTCCATGCGATCAATCGCGGGATCGGTACCGAGGGCT
TTGGCACTGTCCTCGCCGGTCTGTGGGGAGCTGGAAATGGAACCAATACC
TTTGGAGAGAATGTTGGCGCCATCGGGGTCACCAAGATTGGATCCCGACG
TGTAATACAGTGGGCTGCCTTGATAATGGTCCTCCAGGGGGTAATTGGAA
AGTTTGGAGCCATTTTCATTCTCATTCCCGACTCGGTGGTGGGCGGAATC
TTTTGTGTGATGTTTGGCATGATTATAGCTTTTGGGCTATCCACCTTGCA
GTATGTGGATCTGCGATCCGCAAGGAATCTTTACATATTGGGGCTCTCAA
TATTTTTCCCGATGGTATTGTGCCGCTGGATGCAGAAGAACCCTGGAGCT
ATTGACACCGGAAACAAGACCGTGGACTCAACGTTATCGGTGCTACTGGG
CACTACAATTCTCGTGGGTGGAGTTTTGGGATGCTTGCTGGACAATATAA
TCCCAGGGACGCCGGAGGAGAGGGGCCTAATCGACTGGGCAAACGAGATG
CCCCTGGGCGATGATAATGTTAATGATGGCACAGCCACCGACTACGATTT
TCCACTTGGCATGGATGCCATTCGTCGTTGGAAGTGGACCTACTATATTC
CGTTCATGCCGACTTACAAGCTCCAGAAGCAAAGCTGAAAGCTTTCTAGA
CCAT
BS10145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 1722 | CG6293-PB | 1..1722 | 17..1738 | 8595 | 99.9 | Plus |
| CG6293-RA | 1722 | CG6293-PA | 1..1722 | 17..1738 | 8595 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1841 | 16..1738 | 8600 | 99.9 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1841 | 16..1738 | 8600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 669..50 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10308566..10309119 | 1738..1185 | 2770 | 100 | Minus |
| 3R | 32079331 | 3R | 10309182..10309699 | 1186..669 | 2575 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:41:35 has no hits.
BS10145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:03 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 1..1722 | 17..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:14 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 92..1823 | 8..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:31 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 120..1840 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:13 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 102..1822 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:55 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 120..1840 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:55 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10308567..10309117 | 1187..1737 | 100 | <- | Minus |
| 3R | 10309182..10309698 | 670..1186 | 99 | <- | Minus |
| 3R | 10309899..10310518 | 50..669 | 100 | <- | Minus |
| 3R | 10311462..10311494 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:31 Download gff for
BS10145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6134289..6134839 | 1187..1737 | 100 | <- | Minus |
| arm_3R | 6134904..6135420 | 670..1186 | 99 | <- | Minus |
| arm_3R | 6135621..6136240 | 50..669 | 100 | <- | Minus |
| arm_3R | 6137184..6137216 | 17..49 | 100 | | Minus |
BS10145.pep Sequence
Translation from 16 to 1737
> BS10145.pep
MELNNVTIEDATDASKSYSQAANTPPSNEKPKPQLLYAINDNPPWYLSIF
LAFQHYLTMIGAIVSIPFILTPALCMSDEDANRGIIISTMIFVTGIVTYF
QATWGVRLPIVQGGTISFLVPTLAILALPQWKCPEQAVMDAMDEAEREEL
WQVRMRELSGAIAVSAMVQVILGYTGLVGKILKYVTPLTIVPTVSLVGLT
LFEHAAETASKHWGIAVGTTGMLTLFSQIMSNVPVPILAYRKGHGLEIRQ
FQLFRLFPVLLTIMIMWGLCGILTATDVFPPSHPSRTDVRLNVLTSAKWF
YVPYPGQFGWPSVTLSGVLGMLAGVLACTVESLSYYPTVSQMSGAHSPPL
HAINRGIGTEGFGTVLAGLWGAGNGTNTFGENVGAIGVTKIGSRRVIQWA
ALIMVLQGVIGKFGAIFILIPDSVVGGIFCVMFGMIIAFGLSTLQYVDLR
SARNLYILGLSIFFPMVLCRWMQKNPGAIDTGNKTVDSTLSVLLGTTILV
GGVLGCLLDNIIPGTPEERGLIDWANEMPLGDDNVNDGTATDYDFPLGMD
AIRRWKWTYYIPFMPTYKLQKQS*
BS10145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PB | 573 | CG6293-PB | 1..573 | 1..573 | 2994 | 100 | Plus |
| CG6293-PA | 573 | CG6293-PA | 1..573 | 1..573 | 2994 | 100 | Plus |
