Clone Sequence Records
BS10149.3prime Sequence
827 bp (789 high quality bases) assembled on 2006-04-19
> BS10149.3prime
ATGGTCTAGAAAGCTTTTATCTACGGTTTTTATACAATAAATATGTTTTC
ATTGATAAAGGAAGTTGAAGCTGTTGAATGTGCTCCTCCAAGTTTGTGCG
ACCAATTTTTTGACGAATTGTTCTTCGGCAAAGATCCATTAGGGGCAAGG
GTTCGGGATCTAATCCACCAATGTAACGCATTGTTATTTCACAGTGTCCC
CAGACCGCCGAAACAATTGGATATAGTTTTTTCCCTCGCAGTCCTCTAAA
CGCAATACCGAGGTACTGCTGATCAACAATGAAGCTTAGTGTTCCTTCGT
CCATATCTAACGCTACTAAGAACTTATCTGGAACTAAAAAAGCTTCGTCG
TTTTTAAGAATTGCTGGATATGTCACTCCAGCGCAGTTTTTTGAGTCATG
GTATAATTTATTTCTTCCTAAGTCCCAGCCCCAACTTTGTTCAGTTGATC
CAACTAAACTTTGGTAGCCAACTGAATGTAAAGGTGCATCTGCAGTGCAT
ACGCCAACAACAGCGTGGGTTCCTCTTTGCCTTGTTGGCCAATAAATTTC
CCAAATATGCAATCCCTTTGTAAGTCCGACTTTTCCGCGAATACAGTCAG
TACTTTGAGCCACTGGGTGCCTATGAAATGTCAACTTGTCGTCCTCTTTT
ACAAAAATGTTAAGAGACCGATCTTCGGAGTTCCATGAATGCTTCAATTG
AAGATCTCGAGATGCTGGCGGCATATCAAGTAATATATCGATTCGCGCTG
GTTTAACGAAATCAGCTTGCAACTCTCTTGGTATTATTGGTTTAAATGTA
GACTGTGAATCATTGCGACTAACTGTT
BS10149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2944-PC | 1032 | gus-RC | 222..1032 | 827..17 | 4055 | 100 | Minus |
| CG2944-PF | 846 | gus-RF | 36..846 | 827..17 | 4055 | 100 | Minus |
| CG2944-PD | 1092 | gus-RD | 282..1092 | 827..17 | 4055 | 100 | Minus |
| CG2944-PB | 1032 | gus-RB | 222..1032 | 827..17 | 4055 | 100 | Minus |
| CG2944-PE | 1056 | gus-RE | 246..1056 | 827..17 | 4055 | 100 | Minus |
| CG2944-PA | 1050 | gus-RA | 240..1050 | 827..17 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 384..1201 | 827..10 | 4060 | 99.8 | Minus |
| gus-RL | 1933 | CG2944-RL | 673..1490 | 827..10 | 4060 | 99.8 | Minus |
| gus-RK | 1813 | CG2944-RK | 553..1370 | 827..10 | 4060 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121433 | 157..827 | 3355 | 100 | Plus |
| 2R | 25286936 | 2R | 5117656..5117802 | 10..156 | 705 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:48:44 has no hits.
BS10149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:54 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2944-PB | 222..1032 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:43 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2944-PA | 240..1050 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:47:10 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 553..1369 | 10..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:09 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 553..1369 | 10..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:09 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117656..5117802 | 10..156 | 98 | <- | Plus |
| 2R | 5120763..5121433 | 157..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:47:10 Download gff for
BS10149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005161..1005307 | 10..156 | 98 | <- | Plus |
| arm_2R | 1008268..1008938 | 157..827 | 100 | | Plus |
BS10149.5prime Sequence
901 bp (821 high quality bases) assembled on 2006-04-19
> BS10149.5prime
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCANAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAAGG
AAAAACTATATCCCATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACA
A
BS10149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2944-PA | 1050 | gus-RA | 1..839 | 17..855 | 4151 | 99.7 | Plus |
| CG2944-PC | 1032 | gus-RC | 3..821 | 37..855 | 4051 | 99.7 | Plus |
| CG2944-PD | 1092 | gus-RD | 63..881 | 37..855 | 4051 | 99.7 | Plus |
| CG2944-PB | 1032 | gus-RB | 3..821 | 37..855 | 4051 | 99.7 | Plus |
| CG2944-PE | 1056 | gus-RE | 27..845 | 37..855 | 4051 | 99.7 | Plus |
| CG2944-PF | 846 | gus-RF | 1..635 | 221..855 | 3131 | 99.6 | Plus |
| CG2944-PA | 1050 | gus-RA | 836..886 | 851..901 | 230 | 98 | Plus |
| CG2944-PC | 1032 | gus-RC | 818..868 | 851..901 | 230 | 98 | Plus |
| CG2944-PD | 1092 | gus-RD | 878..928 | 851..901 | 230 | 98 | Plus |
| CG2944-PB | 1032 | gus-RB | 818..868 | 851..901 | 230 | 98 | Plus |
| CG2944-PE | 1056 | gus-RE | 842..892 | 851..901 | 230 | 98 | Plus |
| CG2944-PF | 846 | gus-RF | 632..682 | 851..901 | 230 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RG | 1745 | CG2944-RG | 246..1131 | 17..901 | 4364 | 99.5 | Plus |
| gus-RL | 1933 | CG2944-RL | 451..1319 | 34..901 | 4279 | 99.5 | Plus |
| gus-RM | 1525 | CG2944-RM | 165..1030 | 37..901 | 4264 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120787..5121655 | 901..34 | 4254 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:05:10 has no hits.
BS10149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:55 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:44 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2944-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:36 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1129 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:45 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1129 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:45 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5120789..5121652 | 37..899 | 99 | <- | Minus |
| 2R | 5121983..5122002 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:36 Download gff for
BS10149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1009488..1009507 | 17..36 | 100 | | Minus |
| arm_2R | 1008294..1009157 | 37..899 | 99 | <- | Minus |
BS10149.complete Sequence
1082 bp (1082 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636575
> BS10149.complete
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGG
AAAAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAAC
AATGCGTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATC
TTTGCCGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAG
CACATTCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTA
TAAAAACCGTAGATAAAAGCTTTCTAGACCAT
BS10149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 840 | CG2944-PM | 1..840 | 227..1066 | 4200 | 100 | Plus |
| gus-RL | 840 | CG2944-PL | 1..840 | 227..1066 | 4200 | 100 | Plus |
| gus-RK | 840 | CG2944-PK | 1..840 | 227..1066 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RG | 1745 | CG2944-RG | 246..1302 | 17..1073 | 5255 | 99.8 | Plus |
| gus-RL | 1933 | CG2944-RL | 451..1490 | 34..1073 | 5170 | 99.8 | Plus |
| gus-RM | 1525 | CG2944-RM | 165..1201 | 37..1073 | 5155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121655 | 926..34 | 4465 | 100 | Minus |
| 2R | 25286936 | 2R | 5117656..5117802 | 1073..927 | 705 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:02 has no hits.
BS10149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:00 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:29 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RA | 249..1304 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:28 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1293 | 17..1064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:00 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RF | 249..268 | 17..36 | 100 | -> | Plus |
| gus-RF | 457..1492 | 37..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:34 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1293 | 17..1064 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:34 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5121983..5122002 | 17..36 | 100 | | Minus |
| 2R | 5117665..5117802 | 927..1064 | 100 | <- | Minus |
| 2R | 5120763..5121652 | 37..926 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:28 Download gff for
BS10149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005170..1005307 | 927..1064 | 100 | <- | Minus |
| arm_2R | 1008268..1009157 | 37..926 | 100 | <- | Minus |
| arm_2R | 1009488..1009507 | 17..36 | 100 | | Minus |
BS10149.pep Sequence
Translation from 16 to 1065
> BS10149.pep
MEFGKKRYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERL
RLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQ
ADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRH
PVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVG
YQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFL
VALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIG
GLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*
BS10149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-PM | 279 | CG2944-PM | 1..279 | 71..349 | 1486 | 100 | Plus |
| gus-PL | 279 | CG2944-PL | 1..279 | 71..349 | 1486 | 100 | Plus |
| gus-PK | 279 | CG2944-PK | 1..279 | 71..349 | 1486 | 100 | Plus |
| gus-PJ | 279 | CG2944-PJ | 1..279 | 71..349 | 1486 | 100 | Plus |
| gus-PI | 279 | CG2944-PI | 1..279 | 71..349 | 1486 | 100 | Plus |
