Clone Sequence Records
BS10152.3prime Sequence
876 bp (868 high quality bases) assembled on 2006-04-19
> BS10152.3prime
ATGGTCTAGAAAGCTTTTACGTGATAACCGTTGGAGCGTTGCGTCCAGTG
AACTTGGGCAGCTGAGAGATCTCCAGGGCGATGTCGATCAAGGGTTTCAG
CATCACGCTGGCCTGGCCCAAAACATTCTCCTTCTCATAGGAATCAATGT
ACAAGCGAACGGTTGCTCCCGAGCTTCCAGTTCCACTGAGGCGCACCACA
ATGCGGCTGCCATCCTCGAACACAATGCGCAGACCCTGTTTCGTGGCCAC
CGACTTGTCGACAGGATCTGTGTAGCTGAAGTTGTCGGCCTCCTTGACCT
TGTAGGTTTTTCCGCCGCTGGAATAGCTCTTGCCGACGAACTCCGGAGCA
GTTATGGTCTTCTCCATGGTGGCCACCATCTCGTTGCAAGGATCGGAAGC
GCACTCCTCATAATCGTAGCGGGTGAAATAGTTGCGTCCATACACAGACC
AGTGCTGCTTCAGGATGTCTTCGATGCCTTTACCCGTGTGCTGCATCACG
GAGATCCAAGCGAGAACCGCCCAGATGCCATCCTTTTCGCGGATGTGATT
GGAGCCAGTTCCGAAGCTCTCCTCTCCGCACAGACACAACCTTCCGGCGT
CCATGAGATTACCGAAGTACTTCCATCCAGTGGGAACCTCAAACACTTCC
TTGCCCAACTTTCTGCCCACCAAATCCACAGCGGATGCAGTTGGCATACT
GCGGGCGAATCCTTGAACACCATTCTTTTGGAAGTACGGTATGGCCTCCA
GGTAGTGGGCAATTACCGCCAGCGAGTCGCTGGGAGTTACGAAGAACGCC
TTGCTGCCAATGATCATGTTGCGGTCACCATCTCCATCGAAGGCAGCTCC
AATGTCATAGTCTCCCTGGGCGACAG
BS10152.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5165-PA | 1683 | Pgm-RA | 824..1683 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 865..1725 | 876..16 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126342..16127062 | 156..876 | 3605 | 100 | Plus |
| 3L | 28110227 | 3L | 16126136..16126276 | 16..156 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:29 has no hits.
BS10152.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:00 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-PA | 824..1683 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:51 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5165-PA | 824..1683 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:02 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 865..1733 | 8..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:09 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 865..1733 | 8..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:09 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126128..16126275 | 8..155 | 97 | <- | Plus |
| 3L | 16126342..16127062 | 156..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:02 Download gff for
BS10152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119228..16119375 | 8..155 | 97 | <- | Plus |
| arm_3L | 16119442..16120162 | 156..876 | 100 | | Plus |
BS10152.5prime Sequence
858 bp (759 high quality bases) assembled on 2006-04-19
> BS10152.5prime
GAAGTTATCAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGC
CCTATGAGGGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAG
GTTTTCACCCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGA
GGCAAATGGAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATG
GACGTTTCTACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCT
GCCAATGGCGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCAC
CCCTGCCGTATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTG
TTTTGACTGCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATC
AAGTTCAACTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCA
CATCTACAAGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACC
TGCAGATCGACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGA
AAGCCCTTTACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCA
CATGGAGGAAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCA
AAGCCACTGGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTA
ACTGGCTCATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGA
ATCATCGGTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATC
CTGACCCAAATCTCACATACGCCAAAGACCTGGTTGACACTGTCGCCCAG
GGAGACTA
BS10152.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5165-PA | 1683 | Pgm-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..883 | 14..858 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16127044..16127561 | 858..341 | 2575 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 342..93 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 96..14 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:17:02 has no hits.
BS10152.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:01 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:53 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5165-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:10 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 29..882 | 2..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:50:24 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 29..882 | 2..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:50:24 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16127045..16127560 | 342..857 | 99 | <- | Minus |
| 3L | 16128095..16128341 | 95..341 | 100 | <- | Minus |
| 3L | 16128413..16128502 | 2..94 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:10 Download gff for
BS10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16120145..16120660 | 342..857 | 99 | <- | Minus |
| arm_3L | 16121195..16121441 | 95..341 | 100 | <- | Minus |
| arm_3L | 16121513..16121602 | 2..94 | 94 | | Minus |
BS10152.complete Sequence
1715 bp assembled on 2009-08-26
GenBank Submission: KX803110
> BS10152.complete
GAAGTTATCAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGC
CCTATGAGGGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAG
GTTTTCACCCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGA
GGCAAATGGAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATG
GACGTTTCTACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCT
GCCAATGGCGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCAC
CCCTGCCGTATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTG
TTTTGACTGCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATC
AAGTTCAACTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCA
CATCTACAAGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACC
TGCAGATCGACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGA
AAGCCCTTTACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCA
CATGGAGGAAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCA
AAGCCACTGGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTA
ACTGGCTCATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGA
ATCATCGGTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATC
CTGACCCAAATCTCACATACGCCAAGGACCTGGTTGACACTGTCGCCCAG
GGAGACTATGACATTGGAGCTGCCTTCGATGGAGATGGTGACCGCAACAT
GATCATTGGCAGCAAGGCGTTCTTCGTAACTCCCAGCGACTCGCTGGCGG
TAATTGCCCACTACCTGGAGGCCATACCGTACTTCCAAAAGAATGGTGTT
CAAGGATTCGCCCGCAGTATGCCAACTGCATCCGCTGTGGATTTGGTGGG
CAGAAAGTTGGGCAAGGAAGTGTTTGAGGTTCCCACTGGATGGAAGTACT
TCGGTAATCTCATGGACGCCGGAAGGTTGTGTCTGTGCGGAGAGGAGAGC
TTCGGAACTGGCTCCAATCACATCCGCGAAAAGGATGGCATCTGGGCGGT
TCTCGCTTGGATCTCCGTGATGCAGCACACGGGTAAAGGCATCGAAGACA
TCCTGAAGCAGCACTGGTCTGTGTATGGACGCAACTATTTCACCCGCTAC
GATTATGAGGAGTGCGCTTCCGATCCTTGCAACGAGATGGTGGCCACCAT
GGAGAAGACCATAACTGCTCCGGAGTTCGTCGGCAAGAGCTATTCCAGCG
GCGGAAAAACCTACAAGGTCAAGGAGGCCGACAACTTCAGCTACACAGAT
CCTGTCGACAAGTCGGTGGCCACGAAACAGGGTCTGCGCATTGTGTTCGA
GGATGGCAGCCGCATTGTGGTGCGCCTCAGTGGAACTGGAAGCTCGGGAG
CAACCGTTCGCTTGTACATTGATTCCTATGAGAAGGAGAATGTTTTGGGC
CAGGCCAGCGTGATGCTGAAACCCTTGATCGACATCGCCCTGGAGATCTC
TCAGCTGCCCAAGTTCACTGGACGCAACGCTCCAACGGTTATCACGTAAA
AGCTTTCTAGACCAT
BS10152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1683 | CG5165-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..1725 | 14..1700 | 8435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126342..16127561 | 1560..341 | 6100 | 100 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 342..93 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16126136..16126276 | 1700..1560 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 96..14 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:04 has no hits.
BS10152.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:27 Download gff for
BS10152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 107..1787 | 17..1697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:49 Download gff for
BS10152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 42..1722 | 17..1697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:02 Download gff for
BS10152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 42..1722 | 17..1697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:02 Download gff for
BS10152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126139..16126275 | 1561..1697 | 100 | <- | Minus |
| 3L | 16126342..16127560 | 342..1560 | 100 | <- | Minus |
| 3L | 16128095..16128341 | 95..341 | 100 | <- | Minus |
| 3L | 16128413..16128490 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:49 Download gff for
BS10152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119239..16119375 | 1561..1697 | 100 | <- | Minus |
| arm_3L | 16119442..16120660 | 342..1560 | 100 | <- | Minus |
| arm_3L | 16121195..16121441 | 95..341 | 100 | <- | Minus |
| arm_3L | 16121513..16121590 | 17..94 | 100 | | Minus |
BS10152.pep Sequence
Translation from 16 to 1698
> BS10152.pep
MSLTVEIVATKPYEGQKPGTSGLRKKVKVFTQPNYTENFVQAILEANGAA
LAGSTLVVGGDGRFYCKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSS
LIRHNKALGGIVLTASHNPGGPENDFGIKFNCENGGPAPDAFTNHIYKIT
TEIKEYKLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYVRHMEEIF
DFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVH
TTPLPDFGGLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDRNMIIGSK
AFFVTPSDSLAVIAHYLEAIPYFQKNGVQGFARSMPTASAVDLVGRKLGK
EVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWAVLAWIS
VMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTIT
APEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRI
VVRLSGTGSSGATVRLYIDSYEKENVLGQASVMLKPLIDIALEISQLPKF
TGRNAPTVIT*
BS10152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-PA | 560 | CG5165-PA | 1..560 | 1..560 | 2901 | 100 | Plus |
