Clone Sequence Records
BS10154.3prime Sequence
848 bp (785 high quality bases) assembled on 2006-04-19
> BS10154.3prime
ATGGTCTAGAAAGCTTTCATTTGGCTGCCGGCTTATCAGCCGGCGCCCTC
TCGGCAAGTCTTAGCCTCTGCTGTATTTTTAGCCAGAGCAGATCGTACGG
CTCACTGAGTTCCGTTTGTGTTTTGGGAATTCCCACAGATCGTCGCACTT
CCGGCGAGAGGATGAGCAGATTTTGAGCAAGGCCAAAACTGCTGGAAGCT
ACCCAGTATACACATAAAGCTGAAGGCACTGTACAGGCTACTGGAACCAT
CACAACACTCAATCCACGGAACACATTGTTGGCGATGTTCTGCAAGCGTG
TAGAAGGACGAGTTCTAGACATGGCTTGCACTTCAATGATGGCCAAATTG
ATAAGACCTAATGCTACAGGCAGGATATAAGAGTTATCCACCACCGTAAG
GTTTGGTATCCAACCAAATCCGCCAATGGTCATTTCGGTGGTCACGATTT
GAGCTTGAATGGACGTGGGATCCGGCAGCATGTACACTAAATTGCGCAGA
GCCACGGATTGAAAGATCCACAGGGGAATCTGACCCCATAGCACAATCAT
GGTCTTCATGGGATGGCAGTTATCCCGAACTATAAGGTTCTGCCACTGCT
TCTTGATCGAACGCCGATAAACAATCTGAGTCTGCTTTTCGCTCCACTTG
AACTTGTGCTTGGCCATGGCTGCCTCTTTTTTCAGTTCCTCCACAATGGC
CGGCATCTCCAGCGCTATCTTTTCAATTCTGGCGGTGATTTTGTGCTGGT
AAATGGTCAGAGGCAGGGTGACCACGCTCCGAAAAAGGAAAGTGGACAGC
ACGATGGACGCCCACCAGGGCAGGCCACTGTAGTCGTGGATCTTAATG
BS10154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-PA | 1056 | CG4942-RA | 225..1056 | 848..17 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-RA | 1306 | CG4942-RA | 327..1158 | 848..17 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9073728..9074319 | 608..17 | 2960 | 100 | Minus |
3L | 28110227 | 3L | 9073431..9073671 | 848..608 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 16:13:47 has no hits.
BS10154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:05 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-PA | 225..1056 | 17..848 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:56 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-PA | 225..1056 | 17..848 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:24:47 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 327..1161 | 12..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:52:10 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 327..1161 | 12..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:52:10 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9073431..9073671 | 608..848 | 100 | -> | Minus |
3L | 9073729..9074322 | 12..607 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:24:47 Download gff for
BS10154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9066531..9066771 | 608..848 | 100 | -> | Minus |
arm_3L | 9066829..9067422 | 12..607 | 99 | | Minus |
BS10154.5prime Sequence
925 bp (796 high quality bases) assembled on 2006-04-19
> BS10154.5prime
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGGTAGCTTTCAGCAG
TTTTGGGCTTGCTCAAAATCTGCTC
BS10154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-PA | 1056 | CG4942-RA | 1..909 | 17..925 | 4495 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-RA | 1306 | CG4942-RA | 103..1011 | 17..925 | 4515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9073207..9073671 | 17..481 | 2325 | 100 | Plus |
3L | 28110227 | 3L | 9073728..9074172 | 481..925 | 2195 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:18:56 has no hits.
BS10154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:05 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:58 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:41 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 103..1011 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:44:09 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 103..1011 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:44:09 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9073207..9073671 | 17..481 | 100 | -> | Plus |
3L | 9073729..9074172 | 482..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:41 Download gff for
BS10154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9066307..9066771 | 17..481 | 100 | -> | Plus |
arm_3L | 9066829..9067272 | 482..925 | 99 | | Plus |
BS10154.complete Sequence
1088 bp (1088 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636576
> BS10154.complete
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGGTAGCTTCCAGCAG
TTTTGGCCTTGCTCAAAATCTGCTCATCCTCTCGCCGGAAGTGCGACGAT
CTGTGGGAATTCCCAAAACACAAACGGAACTCAGTGAGCCGTACGATCTG
CTCTGGCTAAAAATACAGCAGAGGCTAAGACTTGCCGAGAGGGCGCCGGC
TGATAAGCCGGCAGCCAAATGAAAGCTTTCTAGACCAT
BS10154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-RA | 1056 | CG4942-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-RA | 1306 | CG4942-RA | 103..1158 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9073728..9074319 | 481..1072 | 2960 | 100 | Plus |
3L | 28110227 | 3L | 9073207..9073671 | 17..481 | 2325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:06 has no hits.
BS10154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:01 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:30 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 80..1138 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:11 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 103..1157 | 17..1071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:02 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 80..1138 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:46 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4942-RA | 103..1157 | 17..1071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:46 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9073207..9073671 | 17..481 | 100 | -> | Plus |
3L | 9073729..9074318 | 482..1071 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:11 Download gff for
BS10154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9066307..9066771 | 17..481 | 100 | -> | Plus |
arm_3L | 9066829..9067418 | 482..1071 | 100 | | Plus |
BS10154.pep Sequence
Translation from 16 to 1071
> BS10154.pep
MSALLLLRTCRSSSIAGIYKYTYQGTTIANHTCNHRLSSTEAAAASVQLA
NAGGLVGYWQTLSNSTPVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSV
VTLPLTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQI
VYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLP
DPTSIQAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQA
MSRTRPSTRLQNIANNVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQ
NLLILSPEVRRSVGIPKTQTELSEPYDLLWLKIQQRLRLAERAPADKPAA
K*
BS10154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4942-PA | 351 | CG4942-PA | 1..351 | 1..351 | 1798 | 100 | Plus |
CG6404-PA | 441 | CG6404-PA | 128..362 | 62..320 | 205 | 26.5 | Plus |
CG6404-PB | 441 | CG6404-PB | 128..362 | 62..320 | 205 | 26.5 | Plus |