Clone BS10154 Report

Search the DGRC for BS10154

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG4942-RA
Protein status:BS10154.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10154.3prime Sequence

848 bp (785 high quality bases) assembled on 2006-04-19

> BS10154.3prime
ATGGTCTAGAAAGCTTTCATTTGGCTGCCGGCTTATCAGCCGGCGCCCTC
TCGGCAAGTCTTAGCCTCTGCTGTATTTTTAGCCAGAGCAGATCGTACGG
CTCACTGAGTTCCGTTTGTGTTTTGGGAATTCCCACAGATCGTCGCACTT
CCGGCGAGAGGATGAGCAGATTTTGAGCAAGGCCAAAACTGCTGGAAGCT
ACCCAGTATACACATAAAGCTGAAGGCACTGTACAGGCTACTGGAACCAT
CACAACACTCAATCCACGGAACACATTGTTGGCGATGTTCTGCAAGCGTG
TAGAAGGACGAGTTCTAGACATGGCTTGCACTTCAATGATGGCCAAATTG
ATAAGACCTAATGCTACAGGCAGGATATAAGAGTTATCCACCACCGTAAG
GTTTGGTATCCAACCAAATCCGCCAATGGTCATTTCGGTGGTCACGATTT
GAGCTTGAATGGACGTGGGATCCGGCAGCATGTACACTAAATTGCGCAGA
GCCACGGATTGAAAGATCCACAGGGGAATCTGACCCCATAGCACAATCAT
GGTCTTCATGGGATGGCAGTTATCCCGAACTATAAGGTTCTGCCACTGCT
TCTTGATCGAACGCCGATAAACAATCTGAGTCTGCTTTTCGCTCCACTTG
AACTTGTGCTTGGCCATGGCTGCCTCTTTTTTCAGTTCCTCCACAATGGC
CGGCATCTCCAGCGCTATCTTTTCAATTCTGGCGGTGATTTTGTGCTGGT
AAATGGTCAGAGGCAGGGTGACCACGCTCCGAAAAAGGAAAGTGGACAGC
ACGATGGACGCCCACCAGGGCAGGCCACTGTAGTCGTGGATCTTAATG

BS10154.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-PA 1056 CG4942-RA 225..1056 848..17 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-RA 1306 CG4942-RA 327..1158 848..17 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9073728..9074319 608..17 2960 100 Minus
3L 28110227 3L 9073431..9073671 848..608 1205 100 Minus
Blast to na_te.dros performed on 2015-02-03 16:13:47 has no hits.

BS10154.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:05 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-PA 225..1056 17..848 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:56 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-PA 225..1056 17..848 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:24:47 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 327..1161 12..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:52:10 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 327..1161 12..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:52:10 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9073431..9073671 608..848 100 -> Minus
3L 9073729..9074322 12..607 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:24:47 Download gff for BS10154.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9066531..9066771 608..848 100 -> Minus
arm_3L 9066829..9067422 12..607 99   Minus

BS10154.5prime Sequence

925 bp (796 high quality bases) assembled on 2006-04-19

> BS10154.5prime
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGGTAGCTTTCAGCAG
TTTTGGGCTTGCTCAAAATCTGCTC

BS10154.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-PA 1056 CG4942-RA 1..909 17..925 4495 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-RA 1306 CG4942-RA 103..1011 17..925 4515 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9073207..9073671 17..481 2325 100 Plus
3L 28110227 3L 9073728..9074172 481..925 2195 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 09:18:56 has no hits.

BS10154.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:05 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:48:58 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:41 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 103..1011 17..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:44:09 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 103..1011 17..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:44:09 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9073207..9073671 17..481 100 -> Plus
3L 9073729..9074172 482..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:41 Download gff for BS10154.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9066307..9066771 17..481 100 -> Plus
arm_3L 9066829..9067272 482..925 99   Plus

BS10154.complete Sequence

1088 bp (1088 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636576

> BS10154.complete
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGGTAGCTTCCAGCAG
TTTTGGCCTTGCTCAAAATCTGCTCATCCTCTCGCCGGAAGTGCGACGAT
CTGTGGGAATTCCCAAAACACAAACGGAACTCAGTGAGCCGTACGATCTG
CTCTGGCTAAAAATACAGCAGAGGCTAAGACTTGCCGAGAGGGCGCCGGC
TGATAAGCCGGCAGCCAAATGAAAGCTTTCTAGACCAT

BS10154.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-RA 1056 CG4942-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-RA 1306 CG4942-RA 103..1158 17..1072 5280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9073728..9074319 481..1072 2960 100 Plus
3L 28110227 3L 9073207..9073671 17..481 2325 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:06 has no hits.

BS10154.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:01 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:30 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 80..1138 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:11 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 103..1157 17..1071 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:02 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 80..1138 17..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:46 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 103..1157 17..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:46 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9073207..9073671 17..481 100 -> Plus
3L 9073729..9074318 482..1071 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:11 Download gff for BS10154.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9066307..9066771 17..481 100 -> Plus
arm_3L 9066829..9067418 482..1071 100   Plus

BS10154.pep Sequence

Translation from 16 to 1071

> BS10154.pep
MSALLLLRTCRSSSIAGIYKYTYQGTTIANHTCNHRLSSTEAAAASVQLA
NAGGLVGYWQTLSNSTPVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSV
VTLPLTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQI
VYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLP
DPTSIQAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQA
MSRTRPSTRLQNIANNVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQ
NLLILSPEVRRSVGIPKTQTELSEPYDLLWLKIQQRLRLAERAPADKPAA
K*

BS10154.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-PA 351 CG4942-PA 1..351 1..351 1798 100 Plus
CG6404-PA 441 CG6404-PA 128..362 62..320 205 26.5 Plus
CG6404-PB 441 CG6404-PB 128..362 62..320 205 26.5 Plus