Clone BS10158 Report

Search the DGRC for BS10158

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptxit-RA
Protein status:BS10158.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10158.3prime Sequence

940 bp (808 high quality bases) assembled on 2006-04-19

> BS10158.3prime
ATGGTCTAGAAAGCTTTTATTTGGTTTTTCGTTTTCTCTTAACAGCGGCC
GCGGATGTGGACGATGCGATGGGCACCTTGCCCCAGCTAATGCCCAGAGC
GTACAGATAGTAGGCCCCAAAGAAGTAGAGCACTCCCAACGCCGAGTACA
CGGAGGTCAGCAGTAGGGGCAAGAAGGGCAGGCGCTGGTCCAGGTGCAGC
AGGAAAGAGAGCAGATGCTCGTACAGCGGAATAGCCATGAAGCCCAGCAT
GTATAGCCACTCCAGCGTGTGGAAGCCTCGGAAGCCGGGGAAGATGCGAT
ACAGCTGGCCGTACATCATGGCCACGTACGACATGTACAGGGAATACCGG
GGAATGTACAGATCCGCATCGAAGAGCAGCGGAAAGAGAGAGAAATAGCC
GGCAATGCCAAGGACATAGGCGTATCTGGCATCCTCCCGGTTTACCAGCG
TGAGCAGACAGAGCGGAAGGAGCACCATTAAGATGGCCTTCTCGTGCACA
TGCCAGCCGAAGACGAAGGAGGAACAGCCGCACAAAACCACCGCTCGCAG
GAAGACCAGCGGACTTTGTTTCTTGGCACTGCGAAAGAGCTTCACCAAAA
TGGGCAGCATGAAGAGAGCGGTCAGGGCAAAAGTCACAGGCGGTGTGATG
GCTGGCAGCACCGAGTGCCTGACCTCCTGGACCAATCCTGACGTCGTCGA
GGCACCGCCATCCTGTACCTTCAAAACTCCGGCGGCCAACTTGTCGGCGG
CATTGTACAGCGCCCAGAAGTTGGGTGCCCAGTAGGCGTGCGTTAGGCCA
CGCTTGAAAGGAAACAGACGGGAGAGGACTTGCGGCAATTGCTGCCAGAA
GGGTCCGAAAGACACGGCGAAACGAGTAAGTCCAACGACCAGCAGCTTGA
CAACGGCACCCACCGCAGACACCACACTCGCTTGCTCCAG

BS10158.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4542-PA 1536 CG4542-RA 613..1536 940..17 4570 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1640 CG4542-RA 690..1614 940..16 4595 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6822371..6822814 459..16 2220 100 Minus
X 23542271 X 6821760..6822130 940..570 1825 99.5 Minus
X 23542271 X 6822194..6822304 569..459 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:36:38 has no hits.

BS10158.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:11 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 613..1536 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:04 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 613..1536 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:13 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 690..1594 36..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:28:59 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
xit-RA 690..1594 36..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:28:59 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6821760..6822130 570..940 99 -> Minus
X 6822194..6822304 459..569 100 -> Minus
X 6822372..6822794 36..458 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:13 Download gff for BS10158.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715793..6716163 570..940 99 -> Minus
arm_X 6716227..6716337 459..569 100 -> Minus
arm_X 6716405..6716827 36..458 100   Minus

BS10158.5prime Sequence

770 bp (768 high quality bases) assembled on 2006-04-19

> BS10158.5prime
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTG

BS10158.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4542-PA 1536 CG4542-RA 1..754 17..770 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1640 CG4542-RA 78..831 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6821216..6821901 85..770 3430 100 Plus
X 23542271 X 6821093..6821160 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:44:45 has no hits.

BS10158.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:12 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:06 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:40 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 78..831 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:15 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
xit-RA 78..831 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:15 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6821093..6821160 17..84 100 -> Plus
X 6821216..6821901 85..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:40 Download gff for BS10158.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715126..6715193 17..84 100 -> Plus
arm_X 6715249..6715934 85..770 100   Plus

BS10158.complete Sequence

1568 bp (1568 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636577

> BS10158.complete
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACT
TCTGGGCGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAG
GTACAGGATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAG
GCACTCGGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCG
CTCTCTTCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAA
CAAAGTCCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTC
CTTCGTCTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCC
TTCCGCTCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCC
TATGTCCTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGA
TGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCA
TGATGTACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCAC
ACGCTGGAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGA
GCATCTGCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGC
CCCTACTGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTT
GGGGCCTACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCAT
CGCATCGTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAAT
AAAAGCTTTCTAGACCAT

BS10158.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1536 CG4542-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1640 CG4542-RA 78..1614 17..1553 7685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6821216..6822130 85..999 4575 100 Plus
X 23542271 X 6822371..6822814 1110..1553 2220 100 Plus
X 23542271 X 6822194..6822304 1000..1110 555 100 Plus
X 23542271 X 6821093..6821160 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:17 has no hits.

BS10158.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:43 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 17..1552 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:13 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 75..1591 17..1533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:46 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 78..1594 17..1533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:44 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 75..1591 17..1533 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:27 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 78..1594 17..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:27 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
X 6821093..6821160 17..84 100 -> Plus
X 6821216..6822130 85..999 100 -> Plus
X 6822194..6822304 1000..1110 100 -> Plus
X 6822372..6822794 1111..1533 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:46 Download gff for BS10158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715126..6715193 17..84 100 -> Plus
arm_X 6715249..6716163 85..999 100 -> Plus
arm_X 6716227..6716337 1000..1110 100 -> Plus
arm_X 6716405..6716827 1111..1533 100   Plus

BS10158.pep Sequence

Translation from 16 to 1551

> BS10158.pep
MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA
TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS
VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ
YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL
RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK
RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP
AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW
HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI
PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF
LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS
AAAVKRKRKTK*

BS10158.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
xit-PA 511 CG4542-PA 1..511 1..511 2661 100 Plus
gny-PB 475 CG5091-PB 30..472 21..498 367 28.4 Plus
gny-PA 475 CG5091-PA 30..472 21..498 367 28.4 Plus