Clone Sequence Records
BS10158.3prime Sequence
940 bp (808 high quality bases) assembled on 2006-04-19
> BS10158.3prime
ATGGTCTAGAAAGCTTTTATTTGGTTTTTCGTTTTCTCTTAACAGCGGCC
GCGGATGTGGACGATGCGATGGGCACCTTGCCCCAGCTAATGCCCAGAGC
GTACAGATAGTAGGCCCCAAAGAAGTAGAGCACTCCCAACGCCGAGTACA
CGGAGGTCAGCAGTAGGGGCAAGAAGGGCAGGCGCTGGTCCAGGTGCAGC
AGGAAAGAGAGCAGATGCTCGTACAGCGGAATAGCCATGAAGCCCAGCAT
GTATAGCCACTCCAGCGTGTGGAAGCCTCGGAAGCCGGGGAAGATGCGAT
ACAGCTGGCCGTACATCATGGCCACGTACGACATGTACAGGGAATACCGG
GGAATGTACAGATCCGCATCGAAGAGCAGCGGAAAGAGAGAGAAATAGCC
GGCAATGCCAAGGACATAGGCGTATCTGGCATCCTCCCGGTTTACCAGCG
TGAGCAGACAGAGCGGAAGGAGCACCATTAAGATGGCCTTCTCGTGCACA
TGCCAGCCGAAGACGAAGGAGGAACAGCCGCACAAAACCACCGCTCGCAG
GAAGACCAGCGGACTTTGTTTCTTGGCACTGCGAAAGAGCTTCACCAAAA
TGGGCAGCATGAAGAGAGCGGTCAGGGCAAAAGTCACAGGCGGTGTGATG
GCTGGCAGCACCGAGTGCCTGACCTCCTGGACCAATCCTGACGTCGTCGA
GGCACCGCCATCCTGTACCTTCAAAACTCCGGCGGCCAACTTGTCGGCGG
CATTGTACAGCGCCCAGAAGTTGGGTGCCCAGTAGGCGTGCGTTAGGCCA
CGCTTGAAAGGAAACAGACGGGAGAGGACTTGCGGCAATTGCTGCCAGAA
GGGTCCGAAAGACACGGCGAAACGAGTAAGTCCAACGACCAGCAGCTTGA
CAACGGCACCCACCGCAGACACCACACTCGCTTGCTCCAG
BS10158.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4542-PA | 1536 | CG4542-RA | 613..1536 | 940..17 | 4570 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1640 | CG4542-RA | 690..1614 | 940..16 | 4595 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6822371..6822814 | 459..16 | 2220 | 100 | Minus |
X | 23542271 | X | 6821760..6822130 | 940..570 | 1825 | 99.5 | Minus |
X | 23542271 | X | 6822194..6822304 | 569..459 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:36:38 has no hits.
BS10158.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:11 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 613..1536 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:04 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 613..1536 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:13 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RA | 690..1594 | 36..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:28:59 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xit-RA | 690..1594 | 36..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:28:59 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6821760..6822130 | 570..940 | 99 | -> | Minus |
X | 6822194..6822304 | 459..569 | 100 | -> | Minus |
X | 6822372..6822794 | 36..458 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:13 Download gff for
BS10158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6715793..6716163 | 570..940 | 99 | -> | Minus |
arm_X | 6716227..6716337 | 459..569 | 100 | -> | Minus |
arm_X | 6716405..6716827 | 36..458 | 100 | | Minus |
BS10158.5prime Sequence
770 bp (768 high quality bases) assembled on 2006-04-19
> BS10158.5prime
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTG
BS10158.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4542-PA | 1536 | CG4542-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1640 | CG4542-RA | 78..831 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6821216..6821901 | 85..770 | 3430 | 100 | Plus |
X | 23542271 | X | 6821093..6821160 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:44:45 has no hits.
BS10158.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:12 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:06 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:40 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RA | 78..831 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:15 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xit-RA | 78..831 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:15 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6821093..6821160 | 17..84 | 100 | -> | Plus |
X | 6821216..6821901 | 85..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:40 Download gff for
BS10158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6715126..6715193 | 17..84 | 100 | -> | Plus |
arm_X | 6715249..6715934 | 85..770 | 100 | | Plus |
BS10158.complete Sequence
1568 bp (1568 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636577
> BS10158.complete
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACT
TCTGGGCGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAG
GTACAGGATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAG
GCACTCGGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCG
CTCTCTTCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAA
CAAAGTCCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTC
CTTCGTCTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCC
TTCCGCTCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCC
TATGTCCTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGA
TGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCA
TGATGTACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCAC
ACGCTGGAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGA
GCATCTGCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGC
CCCTACTGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTT
GGGGCCTACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCAT
CGCATCGTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAAT
AAAAGCTTTCTAGACCAT
BS10158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1536 | CG4542-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1640 | CG4542-RA | 78..1614 | 17..1553 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6821216..6822130 | 85..999 | 4575 | 100 | Plus |
X | 23542271 | X | 6822371..6822814 | 1110..1553 | 2220 | 100 | Plus |
X | 23542271 | X | 6822194..6822304 | 1000..1110 | 555 | 100 | Plus |
X | 23542271 | X | 6821093..6821160 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:17 has no hits.
BS10158.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:43 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RB | 1..1536 | 17..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:13 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atx-1-RB | 75..1591 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:46 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RA | 78..1594 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:44 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atx-1-RB | 75..1591 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:27 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xit-RA | 78..1594 | 17..1533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:27 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6821093..6821160 | 17..84 | 100 | -> | Plus |
X | 6821216..6822130 | 85..999 | 100 | -> | Plus |
X | 6822194..6822304 | 1000..1110 | 100 | -> | Plus |
X | 6822372..6822794 | 1111..1533 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:46 Download gff for
BS10158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6715126..6715193 | 17..84 | 100 | -> | Plus |
arm_X | 6715249..6716163 | 85..999 | 100 | -> | Plus |
arm_X | 6716227..6716337 | 1000..1110 | 100 | -> | Plus |
arm_X | 6716405..6716827 | 1111..1533 | 100 | | Plus |
BS10158.pep Sequence
Translation from 16 to 1551
> BS10158.pep
MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA
TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS
VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ
YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL
RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK
RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP
AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW
HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI
PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF
LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS
AAAVKRKRKTK*
BS10158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-PA | 511 | CG4542-PA | 1..511 | 1..511 | 2661 | 100 | Plus |
gny-PB | 475 | CG5091-PB | 30..472 | 21..498 | 367 | 28.4 | Plus |
gny-PA | 475 | CG5091-PA | 30..472 | 21..498 | 367 | 28.4 | Plus |