Clone Sequence Records
BS10160.3prime Sequence
925 bp (829 high quality bases) assembled on 2006-04-19
> BS10160.3prime
ATGGTCTAGAAAGCTTTTATCGTGTATCGGTGATATTGTTTTTGCTGCCG
AATATCTTCACCAACTGCGACTCGTAGTCGTCAATGTTGCGCTTCATAAT
ATCCATGCAGGGACCCAGCAAACGCTCAAAGGCCTTGACATCGAGGAATG
CTAGCTTGACGACGCCGCCCGTGGCGTAGACGGATGCTGCCCGGGGTCGA
TGTGTCACCAGCGCCAGCTCGCCGAAGTACTGTCCCTTGCCCAGCTGGGA
GATCTCCACCTCGGCGTCGTCCTGGTCCATGCGCACGGACACCGTTCCCT
CCTCAATGAAGTACATGCCGTCGGCGGCGTCACCCTGTTTGATGATGCGT
TCGCCATTGTCGTAGCTCTTCGAAACCAAGGCATCCGCCAGATTCATGCG
TTCGTAGTTCTGCAAGGCCTTCAGCATGGGCACGCTGTTCAACAGCTCCT
CGTACATTTTCCGCTTCCTGAAGGCCGACTTCAAGAGGATGCGGCGGAAG
GTCTGGCGATCCATGGCCCAAAGTAGACCACTCGTTTCCGCCTGCACGGT
GGCCGCTCTGGGCATATTGTAGAGCAGCGCTAATTCACCGAAGAGTCCAG
TGTGATTGTAGGTGTTAATGTGCTTGTCATTAATATAGACTTTGTAGACG
CCAGATTCAATAACATAAAAGTTATCGCCGTCGTCACCCTGGCGGATGAT
AAAGTCACCCGGCTGAACCTTTCGCTCGAACATGGCATCCAGGACTTGGT
TCATCTGCTCCTTCTCGAGGGATCGGAAGAGGAGGACGTTCTTCACCGAC
TCGACCAGCCGGGCGCGCTGCTCATCTGTCTTGGGGACACGGCGGTGGCG
CCATCATCGTCGTCATCCGCCTCCGGATCGTAGGCCTCGGCGAAAACTGA
TTTGCGACGCGAGCTGGGCATCACT
BS10160.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15862-PA | 1134 | Pka-R2-RA | 314..1134 | 837..17 | 4105 | 100 | Minus |
| CG15862-PB | 1134 | Pka-R2-RB | 314..1134 | 837..17 | 4105 | 100 | Minus |
| CG15862-PC | 1134 | Pka-R2-RC | 314..1134 | 837..17 | 4105 | 100 | Minus |
| CG15862-PA | 1134 | Pka-R2-RA | 225..313 | 925..837 | 420 | 98.8 | Minus |
| CG15862-PB | 1134 | Pka-R2-RB | 225..313 | 925..837 | 420 | 98.8 | Minus |
| CG15862-PC | 1134 | Pka-R2-RC | 225..313 | 925..837 | 420 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RB | 4108 | CG15862-RB | 598..1509 | 925..15 | 4520 | 99.8 | Minus |
| Pka-R2-RA | 2157 | CG15862-RA | 577..1488 | 925..15 | 4520 | 99.8 | Minus |
| Pka-R2-RE | 2102 | CG15862-RE | 734..1522 | 925..138 | 3890 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9997704..9997890 | 148..334 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 9999734..9999905 | 755..925 | 795 | 98.8 | Plus |
| 2R | 25286936 | 2R | 9998415..9998564 | 410..559 | 750 | 100 | Plus |
| 2R | 25286936 | 2R | 9996489..9996621 | 15..147 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 9999425..9999529 | 654..758 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 9998707..9998802 | 558..653 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 9998269..9998349 | 332..412 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:14:44 has no hits.
BS10160.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:15 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15862-PC | 225..1134 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:10 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15862-PC | 225..1134 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:20 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RA | 577..1488 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:53:27 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RA | 577..1488 | 15..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:53:27 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9999425..9999525 | 654..754 | 100 | <- | Plus |
| 2R | 9999734..9999905 | 755..925 | 98 | | Plus |
| 2R | 9996489..9996621 | 15..147 | 100 | <- | Plus |
| 2R | 9997704..9997889 | 148..333 | 100 | <- | Plus |
| 2R | 9998271..9998346 | 334..409 | 100 | <- | Plus |
| 2R | 9998415..9998562 | 410..557 | 100 | <- | Plus |
| 2R | 9998707..9998802 | 558..653 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:20 Download gff for
BS10160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5883994..5884126 | 15..147 | 100 | <- | Plus |
| arm_2R | 5885209..5885394 | 148..333 | 100 | <- | Plus |
| arm_2R | 5885776..5885851 | 334..409 | 100 | <- | Plus |
| arm_2R | 5885920..5886067 | 410..557 | 100 | <- | Plus |
| arm_2R | 5886212..5886307 | 558..653 | 100 | <- | Plus |
| arm_2R | 5886930..5887030 | 654..754 | 100 | <- | Plus |
| arm_2R | 5887239..5887410 | 755..925 | 98 | | Plus |
BS10160.5prime Sequence
657 bp (656 high quality bases) assembled on 2006-04-19
> BS10160.5prime
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
GCATGGA
BS10160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15862-PA | 1134 | Pka-R2-RA | 1..641 | 17..657 | 3180 | 99.8 | Plus |
| CG15862-PB | 1134 | Pka-R2-RB | 1..641 | 17..657 | 3180 | 99.8 | Plus |
| CG15862-PC | 1134 | Pka-R2-RC | 1..641 | 17..657 | 3180 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RE | 2102 | CG15862-RE | 510..1150 | 17..657 | 3190 | 99.8 | Plus |
| Pka-R2-RD | 1614 | CG15862-RD | 353..993 | 17..657 | 3190 | 99.8 | Plus |
| Pka-R2-RB | 4108 | CG15862-RB | 374..1014 | 17..657 | 3190 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 9999734..9999916 | 412..230 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 9999425..9999529 | 513..409 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 9998707..9998802 | 609..514 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 9998515..9998564 | 657..608 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:33:07 has no hits.
BS10160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:16 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15862-PC | 1..640 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:12 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15862-PC | 1..640 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:26 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RB | 374..1013 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:40 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RB | 374..1013 | 17..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:40 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9999734..9999915 | 231..412 | 100 | <- | Minus |
| 2R | 10005157..10005370 | 17..230 | 100 | | Minus |
| 2R | 9998707..9998802 | 514..609 | 100 | <- | Minus |
| 2R | 9999425..9999525 | 413..513 | 100 | <- | Minus |
| 2R | 9998516..9998562 | 610..656 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:26 Download gff for
BS10160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5886021..5886067 | 610..656 | 97 | <- | Minus |
| arm_2R | 5886212..5886307 | 514..609 | 100 | <- | Minus |
| arm_2R | 5886930..5887030 | 413..513 | 100 | <- | Minus |
| arm_2R | 5887239..5887420 | 231..412 | 100 | <- | Minus |
| arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
BS10160.complete Sequence
1166 bp (1166 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636578
> BS10160.complete
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
CCATGGATCGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGG
AAGCGGAAAATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGC
CTTGCAGAACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGA
GCTACGACAATGGCGAACGCATCATCAAACAGGGTGACGCCGCCGACGGC
ATGTACTTCATTGAGGAGGGAACGGTGTCCGTGCGCATGGACCAGGACGA
CGCCGAGGTGGAGATCTCCCAGCTGGGCAAGGGACAGTACTTCGGCGAGC
TGGCGCTGGTGACACATCGACCCCGGGCAGCATCCGTCTACGCCACGGGC
GGCGTCGTCAAGCTAGCATTCCTCGATGTCAAGGCCTTTGAGCGTTTGCT
GGGTCCCTGCATGGATATTATGAAGCGCAACATTGACGACTACGAGTCGC
AGTTGGTGAAGATATTCGGCAGCAAAAACAATATCACCGATACACGATAA
AAGCTTTCTAGACCAT
BS10160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RB | 1134 | CG15862-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
| Pka-R2-RA | 1134 | CG15862-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
| Pka-R2-RE | 1131 | CG15862-PE | 1..1013 | 17..1029 | 5050 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RB | 4108 | CG15862-RB | 374..1509 | 17..1152 | 5680 | 100 | Plus |
| Pka-R2-RA | 2157 | CG15862-RA | 353..1488 | 17..1152 | 5680 | 100 | Plus |
| Pka-R2-RE | 2102 | CG15862-RE | 510..1522 | 17..1029 | 5050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 9997704..9997890 | 1019..833 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 9999734..9999916 | 412..230 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 9998415..9998564 | 757..608 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 9996489..9996621 | 1152..1020 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 9999425..9999529 | 513..409 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 9998707..9998802 | 609..514 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 9998269..9998349 | 835..755 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:46 has no hits.
BS10160.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:39 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RC | 1..1134 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:16 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RC | 292..1427 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:21 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RA | 353..1484 | 17..1148 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:39 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RC | 292..1427 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:49 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RA | 353..1484 | 17..1148 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:49 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9996493..9996621 | 1020..1148 | 100 | <- | Minus |
| 2R | 9997704..9997889 | 834..1019 | 100 | <- | Minus |
| 2R | 9998271..9998346 | 758..833 | 100 | <- | Minus |
| 2R | 9998415..9998562 | 610..757 | 100 | <- | Minus |
| 2R | 9998707..9998802 | 514..609 | 100 | <- | Minus |
| 2R | 9999425..9999525 | 413..513 | 100 | <- | Minus |
| 2R | 9999734..9999915 | 231..412 | 100 | <- | Minus |
| 2R | 10005157..10005370 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:21 Download gff for
BS10160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5883998..5884126 | 1020..1148 | 100 | <- | Minus |
| arm_2R | 5885209..5885394 | 834..1019 | 100 | <- | Minus |
| arm_2R | 5885776..5885851 | 758..833 | 100 | <- | Minus |
| arm_2R | 5885920..5886067 | 610..757 | 100 | <- | Minus |
| arm_2R | 5886212..5886307 | 514..609 | 100 | <- | Minus |
| arm_2R | 5886930..5887030 | 413..513 | 100 | <- | Minus |
| arm_2R | 5887239..5887420 | 231..412 | 100 | <- | Minus |
| arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
BS10160.pep Sequence
Translation from 16 to 1149
> BS10160.pep
MSSDSSRRIQVPEELKEVLLQFSISFLVEQPPDVIDYAVEYFTKLQSERP
SVSHTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEADDDDDG
ATAVFPKTDEQRARLVESVKNVLLFRSLEKEQMNQVLDAMFERKVQPGDF
IIRQGDDGDNFYVIESGVYKVYINDKHINTYNHTGLFGELALLYNMPRAA
TVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYE
RMNLADALVSKSYDNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI
SQLGKGQYFGELALVTHRPRAASVYATGGVVKLAFLDVKAFERLLGPCMD
IMKRNIDDYESQLVKIFGSKNNITDTR*
BS10160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-PB | 377 | CG15862-PB | 1..377 | 1..377 | 1911 | 100 | Plus |
| Pka-R2-PA | 377 | CG15862-PA | 1..377 | 1..377 | 1911 | 100 | Plus |
| Pka-R2-PD | 373 | CG15862-PD | 1..373 | 1..373 | 1769 | 93.8 | Plus |
| Pka-R2-PE | 376 | CG15862-PE | 1..372 | 1..369 | 1758 | 94.4 | Plus |
| Pka-R1-PAC | 377 | CG42341-PAC | 26..371 | 15..361 | 637 | 41.2 | Plus |
