Clone Sequence Records
BS10163.3prime Sequence
910 bp (760 high quality bases) assembled on 2006-04-19
> BS10163.3prime
ATGGTCTAGAAAGCTTTCAGTAACCGTACTTGTCTTGCCACGAGGTCATC
ACATCATTGGCCAGGTTGCTCAGACGGCCGGCCACTTTGTGTACACCCTG
GCGTACGCTTTCTTTTACGCTTTCCACATCCAAGTCCGGTGCACTGAAGT
TGACCGAAGATGCCCTATTGCCCCCAGTGCCACCAGGGGAGCCGTCCCCA
AAATAGTCCGACGAAGATATGGCTCGCGATCCCTGGAAGCGGTTCAAGCT
TGCGCTTACATCGGCCGAAGACTGTTCGCTGGCGAAGTACTGGTCGGAGC
CGAAACCCTTGGAGTTGCCGAACTTTTGCTGGGCGATCACGGGATCTGTG
CTCGTTCCTCCTTTGGTGTGGGTTTGCGATGAACCACTATTCTTCTTAAC
GGGCGCCGACGTTTTGGGTTTGTCATAGTCATTGCTGCGAGAAAACATGG
ACGTGATATTGCTGTGGCTACCCCCAATAGGCTCAATTGTCTCGTAGCCC
AGCGCATCAAGTTCAAACTTATCAAGCTTGCTTGTTCCGCCAACTGAGCT
CTCCCGCTTTTCGCTAGATCCTCCTCCTCCTCCACCGCTGCTACTATTTC
CGTATAGGGAAAAGTCAGTGAAAAAATTCTCGCTTTCCAATAAGGAGAGT
TTTGCTTTAGGGGCGGCCGACTGCTGAATAGTCTCCATATCGCCGAGAGC
GGAGTGGGCCATGTCGGAGCCTCGCAGGTTGAAGCCCATGCCCAGCCGCT
CCATCTGTTTAGCCTTAGCAGGGTCCATGGTCTTAAGCTTGGCCTCCTCG
CGGGTCTTCTGCATGGAGAGTTCTTGGTATGCCAATCGCATGCTGGGCAC
CGTCTCTAGTTCGTCCTCGGCCGTCTGTGGCTTGACCACAGGTGCTGCTG
CAGCTGATGT
BS10163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6838-PA | 1659 | CG6838-RA | 766..1659 | 910..17 | 4420 | 99.7 | Minus |
CG6838-PB | 1659 | CG6838-RB | 766..1659 | 910..17 | 4420 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP3-RG | 2298 | CG6838-RG | 869..1762 | 910..17 | 4440 | 99.8 | Minus |
ArfGAP3-RF | 2193 | CG6838-RF | 764..1657 | 910..17 | 4440 | 99.8 | Minus |
ArfGAP3-RE | 2190 | CG6838-RE | 761..1654 | 910..17 | 4440 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22715155..22715902 | 163..910 | 3725 | 99.9 | Plus |
3L | 28110227 | 3L | 22714944..22715090 | 17..163 | 720 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:16:34 has no hits.
BS10163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:22 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6838-PB | 766..1659 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:18 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6838-PB | 766..1659 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:17 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RE | 761..1654 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:27 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RE | 761..1654 | 17..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:27 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22714944..22715089 | 17..162 | 99 | <- | Plus |
3L | 22715155..22715902 | 163..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:17 Download gff for
BS10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22708044..22708189 | 17..162 | 99 | <- | Plus |
arm_3L | 22708255..22709002 | 163..910 | 99 | | Plus |
BS10163.5prime Sequence
811 bp (805 high quality bases) assembled on 2006-04-19
> BS10163.5prime
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAG
BS10163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6838-PA | 1659 | CG6838-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG6838-PB | 1659 | CG6838-RB | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP3-RC | 2580 | CG6838-RC | 382..1180 | 13..811 | 3995 | 100 | Plus |
ArfGAP3-RB | 2307 | CG6838-RB | 109..907 | 13..811 | 3995 | 100 | Plus |
ArfGAP3-RA | 2689 | CG6838-RA | 396..1194 | 13..811 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22716569..22716892 | 421..98 | 1620 | 100 | Minus |
3L | 28110227 | 3L | 22716049..22716204 | 692..537 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 22715873..22715998 | 811..686 | 630 | 100 | Minus |
3L | 28110227 | 3L | 22716297..22716416 | 539..420 | 600 | 100 | Minus |
3L | 28110227 | 3L | 22716971..22717055 | 97..13 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:48:33 has no hits.
BS10163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:23 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6838-PB | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:20 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6838-PB | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:53 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RA | 392..1194 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:29 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RA | 392..1194 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:29 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22715873..22715998 | 686..811 | 100 | <- | Minus |
3L | 22716056..22716202 | 539..685 | 100 | <- | Minus |
3L | 22716298..22716414 | 422..538 | 100 | <- | Minus |
3L | 22716569..22716892 | 98..421 | 100 | <- | Minus |
3L | 22716971..22717059 | 9..97 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:53 Download gff for
BS10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22710071..22710159 | 9..97 | 97 | | Minus |
arm_3L | 22708973..22709098 | 686..811 | 100 | <- | Minus |
arm_3L | 22709156..22709302 | 539..685 | 100 | <- | Minus |
arm_3L | 22709398..22709514 | 422..538 | 100 | <- | Minus |
arm_3L | 22709669..22709992 | 98..421 | 100 | <- | Minus |
BS10163.complete Sequence
1691 bp assembled on 2009-08-26
GenBank Submission: KX804690
> BS10163.complete
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAGCCACAGACGGCCGAGGACGAACTAGAGACGGTGGCCAGC
ATGCGATTGGCATACCAAGAACTCTCCATGCAGAAGACCCGCGAGGAGGC
CAAGCTTAAGACCATGGACCCTGCTAAGGCTAAACAGATGGAGCGGCTGG
GCATGGGCTTCAACCTGCGAGGCTCCGACATGGCCCACTCCGCTCTCGGC
GATATGGAGACTATTCAGCAGTCGGCCGCCCCTAAAGCAAAACTCTCCTT
ATTGGAAAGCGAGAATTTTTTCACTGACTTTTCCCTATACGGAAATAGTA
GCAGCGGTGGAGGAGGAGGAGGATCTAGCGAAAAGCGGGAGAGCTCAGTT
GGCGGAACAAGCAAGCTTGATAAGTTTGAACTTGATGCGCTGGGCTACGA
GACAATTGAGCCTATTGGGGGTAGCCACAGCAATATCACGTCCATGTTTT
CTCGCAGCAATGACTATGACAAACCCAAAACGTCGGCGCCCGTTAAGAAG
AATAGTGGTTCATCGCAAACCCACACCAAAGGAGGAACGAGCACAGATCC
CGTGATCGCCCAGCAAAAGTTCGGCAACTCCAAGGGTTTCGGCTCCGACC
AGTACTTCGCCAGCGAACAGTCTTCGGCCGATGTAAGCGCAAGCTTGAAC
CGCTTCCAGGGATCGCGAGCCATATCTTCGTCGGACTATTTTGGGGACGG
CTCCCCTGGTGGCACTGGGGGCAATAGGGCATCTTCGGTCAACTTCAGTG
CACCGGACTTGGATGTGGAAAGCGTAAAAGAAAGCGTACGCCAGGGTGTA
CACAAAGTGGCCGGCCGTCTGAGCAACCTGGCCAATGATGTGATGACCTC
GTGGCAAGACAAGTACGGTTACTGAAAGCTTTCTAGACCAT
BS10163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP3-RC | 1659 | CG6838-PC | 1..1659 | 17..1675 | 8280 | 99.9 | Plus |
ArfGAP3-RB | 1659 | CG6838-PB | 1..1659 | 17..1675 | 8280 | 99.9 | Plus |
ArfGAP3-RA | 1659 | CG6838-PA | 1..1659 | 17..1675 | 8280 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP3-RC | 2580 | CG6838-RC | 382..2044 | 13..1675 | 8300 | 99.9 | Plus |
ArfGAP3-RB | 2307 | CG6838-RB | 109..1771 | 13..1675 | 8300 | 99.9 | Plus |
ArfGAP3-RA | 2689 | CG6838-RA | 396..2058 | 13..1675 | 8300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22715155..22715998 | 1529..686 | 4220 | 100 | Minus |
3L | 28110227 | 3L | 22716569..22716892 | 421..98 | 1620 | 100 | Minus |
3L | 28110227 | 3L | 22716049..22716204 | 692..537 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 22714944..22715090 | 1675..1529 | 720 | 99.3 | Minus |
3L | 28110227 | 3L | 22716297..22716416 | 539..420 | 600 | 100 | Minus |
3L | 28110227 | 3L | 22716971..22717055 | 97..13 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:59 has no hits.
BS10163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:11 Download gff for
BS10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6838-RC | 386..2043 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:14 Download gff for
BS10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RA | 400..2057 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:34 Download gff for
BS10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ArfGAP3-RA | 400..2057 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:34 Download gff for
BS10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22716569..22716892 | 98..421 | 100 | <- | Minus |
3L | 22716971..22717051 | 17..97 | 100 | | Minus |
3L | 22714945..22715089 | 1530..1674 | 99 | <- | Minus |
3L | 22715155..22715998 | 686..1529 | 100 | <- | Minus |
3L | 22716056..22716202 | 539..685 | 100 | <- | Minus |
3L | 22716298..22716414 | 422..538 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:14 Download gff for
BS10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22709398..22709514 | 422..538 | 100 | <- | Minus |
arm_3L | 22708045..22708189 | 1530..1674 | 99 | <- | Minus |
arm_3L | 22708255..22709098 | 686..1529 | 100 | <- | Minus |
arm_3L | 22709156..22709302 | 539..685 | 100 | <- | Minus |
arm_3L | 22709669..22709992 | 98..421 | 100 | <- | Minus |
arm_3L | 22710071..22710151 | 17..97 | 100 | | Minus |
BS10163.pep Sequence
Translation from 16 to 1674
> BS10163.pep
MASPAAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICI
DCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNC
STTDAQVKYNSRAAQLYRDKLCAQAQQAMKTHGTKLHLEQTDKSEGNEAA
REEDFFAQCDNEVDFNVQNNNVSKDPNPPTVAPVISVETQQGGAPSVNLL
NSVVPAAVPSSIGARKVQPKKGGLGARKVGGLGATKVKTNFADIEARANA
ANEMKTSAAAAPVVKPQTAEDELETVASMRLAYQELSMQKTREEAKLKTM
DPAKAKQMERLGMGFNLRGSDMAHSALGDMETIQQSAAPKAKLSLLESEN
FFTDFSLYGNSSSGGGGGGSSEKRESSVGGTSKLDKFELDALGYETIEPI
GGSHSNITSMFSRSNDYDKPKTSAPVKKNSGSSQTHTKGGTSTDPVIAQQ
KFGNSKGFGSDQYFASEQSSADVSASLNRFQGSRAISSSDYFGDGSPGGT
GGNRASSVNFSAPDLDVESVKESVRQGVHKVAGRLSNLANDVMTSWQDKY
GY*
BS10163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ArfGAP3-PC | 552 | CG6838-PC | 1..552 | 1..552 | 2833 | 100 | Plus |
ArfGAP3-PB | 552 | CG6838-PB | 1..552 | 1..552 | 2833 | 100 | Plus |
ArfGAP3-PA | 552 | CG6838-PA | 1..552 | 1..552 | 2833 | 100 | Plus |
ArfGAP3-PH | 553 | CG6838-PH | 1..553 | 1..552 | 2821 | 99.8 | Plus |
ArfGAP3-PG | 549 | CG6838-PG | 1..549 | 1..552 | 2806 | 99.5 | Plus |