Clone BS10163 Report

Search the DGRC for BS10163

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptArfGAP3-RA
Protein status:BS10163.pep: full length peptide match
Sequenced Size:1691

Clone Sequence Records

BS10163.3prime Sequence

910 bp (760 high quality bases) assembled on 2006-04-19

> BS10163.3prime
ATGGTCTAGAAAGCTTTCAGTAACCGTACTTGTCTTGCCACGAGGTCATC
ACATCATTGGCCAGGTTGCTCAGACGGCCGGCCACTTTGTGTACACCCTG
GCGTACGCTTTCTTTTACGCTTTCCACATCCAAGTCCGGTGCACTGAAGT
TGACCGAAGATGCCCTATTGCCCCCAGTGCCACCAGGGGAGCCGTCCCCA
AAATAGTCCGACGAAGATATGGCTCGCGATCCCTGGAAGCGGTTCAAGCT
TGCGCTTACATCGGCCGAAGACTGTTCGCTGGCGAAGTACTGGTCGGAGC
CGAAACCCTTGGAGTTGCCGAACTTTTGCTGGGCGATCACGGGATCTGTG
CTCGTTCCTCCTTTGGTGTGGGTTTGCGATGAACCACTATTCTTCTTAAC
GGGCGCCGACGTTTTGGGTTTGTCATAGTCATTGCTGCGAGAAAACATGG
ACGTGATATTGCTGTGGCTACCCCCAATAGGCTCAATTGTCTCGTAGCCC
AGCGCATCAAGTTCAAACTTATCAAGCTTGCTTGTTCCGCCAACTGAGCT
CTCCCGCTTTTCGCTAGATCCTCCTCCTCCTCCACCGCTGCTACTATTTC
CGTATAGGGAAAAGTCAGTGAAAAAATTCTCGCTTTCCAATAAGGAGAGT
TTTGCTTTAGGGGCGGCCGACTGCTGAATAGTCTCCATATCGCCGAGAGC
GGAGTGGGCCATGTCGGAGCCTCGCAGGTTGAAGCCCATGCCCAGCCGCT
CCATCTGTTTAGCCTTAGCAGGGTCCATGGTCTTAAGCTTGGCCTCCTCG
CGGGTCTTCTGCATGGAGAGTTCTTGGTATGCCAATCGCATGCTGGGCAC
CGTCTCTAGTTCGTCCTCGGCCGTCTGTGGCTTGACCACAGGTGCTGCTG
CAGCTGATGT

BS10163.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6838-PA 1659 CG6838-RA 766..1659 910..17 4420 99.7 Minus
CG6838-PB 1659 CG6838-RB 766..1659 910..17 4420 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RG 2298 CG6838-RG 869..1762 910..17 4440 99.8 Minus
ArfGAP3-RF 2193 CG6838-RF 764..1657 910..17 4440 99.8 Minus
ArfGAP3-RE 2190 CG6838-RE 761..1654 910..17 4440 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22715155..22715902 163..910 3725 99.9 Plus
3L 28110227 3L 22714944..22715090 17..163 720 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:16:34 has no hits.

BS10163.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:22 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 766..1659 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:18 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 766..1659 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:17 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RE 761..1654 17..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:27 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RE 761..1654 17..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:27 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22714944..22715089 17..162 99 <- Plus
3L 22715155..22715902 163..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:17 Download gff for BS10163.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22708044..22708189 17..162 99 <- Plus
arm_3L 22708255..22709002 163..910 99   Plus

BS10163.5prime Sequence

811 bp (805 high quality bases) assembled on 2006-04-19

> BS10163.5prime
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAG

BS10163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6838-PA 1659 CG6838-RA 1..795 17..811 3975 100 Plus
CG6838-PB 1659 CG6838-RB 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 2580 CG6838-RC 382..1180 13..811 3995 100 Plus
ArfGAP3-RB 2307 CG6838-RB 109..907 13..811 3995 100 Plus
ArfGAP3-RA 2689 CG6838-RA 396..1194 13..811 3995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22716569..22716892 421..98 1620 100 Minus
3L 28110227 3L 22716049..22716204 692..537 750 98.7 Minus
3L 28110227 3L 22715873..22715998 811..686 630 100 Minus
3L 28110227 3L 22716297..22716416 539..420 600 100 Minus
3L 28110227 3L 22716971..22717055 97..13 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:48:33 has no hits.

BS10163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:23 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:20 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:53 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 392..1194 9..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:29 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 392..1194 9..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:29 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22715873..22715998 686..811 100 <- Minus
3L 22716056..22716202 539..685 100 <- Minus
3L 22716298..22716414 422..538 100 <- Minus
3L 22716569..22716892 98..421 100 <- Minus
3L 22716971..22717059 9..97 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:53 Download gff for BS10163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22710071..22710159 9..97 97   Minus
arm_3L 22708973..22709098 686..811 100 <- Minus
arm_3L 22709156..22709302 539..685 100 <- Minus
arm_3L 22709398..22709514 422..538 100 <- Minus
arm_3L 22709669..22709992 98..421 100 <- Minus

BS10163.complete Sequence

1691 bp assembled on 2009-08-26

GenBank Submission: KX804690

> BS10163.complete
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAGCCACAGACGGCCGAGGACGAACTAGAGACGGTGGCCAGC
ATGCGATTGGCATACCAAGAACTCTCCATGCAGAAGACCCGCGAGGAGGC
CAAGCTTAAGACCATGGACCCTGCTAAGGCTAAACAGATGGAGCGGCTGG
GCATGGGCTTCAACCTGCGAGGCTCCGACATGGCCCACTCCGCTCTCGGC
GATATGGAGACTATTCAGCAGTCGGCCGCCCCTAAAGCAAAACTCTCCTT
ATTGGAAAGCGAGAATTTTTTCACTGACTTTTCCCTATACGGAAATAGTA
GCAGCGGTGGAGGAGGAGGAGGATCTAGCGAAAAGCGGGAGAGCTCAGTT
GGCGGAACAAGCAAGCTTGATAAGTTTGAACTTGATGCGCTGGGCTACGA
GACAATTGAGCCTATTGGGGGTAGCCACAGCAATATCACGTCCATGTTTT
CTCGCAGCAATGACTATGACAAACCCAAAACGTCGGCGCCCGTTAAGAAG
AATAGTGGTTCATCGCAAACCCACACCAAAGGAGGAACGAGCACAGATCC
CGTGATCGCCCAGCAAAAGTTCGGCAACTCCAAGGGTTTCGGCTCCGACC
AGTACTTCGCCAGCGAACAGTCTTCGGCCGATGTAAGCGCAAGCTTGAAC
CGCTTCCAGGGATCGCGAGCCATATCTTCGTCGGACTATTTTGGGGACGG
CTCCCCTGGTGGCACTGGGGGCAATAGGGCATCTTCGGTCAACTTCAGTG
CACCGGACTTGGATGTGGAAAGCGTAAAAGAAAGCGTACGCCAGGGTGTA
CACAAAGTGGCCGGCCGTCTGAGCAACCTGGCCAATGATGTGATGACCTC
GTGGCAAGACAAGTACGGTTACTGAAAGCTTTCTAGACCAT

BS10163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 1659 CG6838-PC 1..1659 17..1675 8280 99.9 Plus
ArfGAP3-RB 1659 CG6838-PB 1..1659 17..1675 8280 99.9 Plus
ArfGAP3-RA 1659 CG6838-PA 1..1659 17..1675 8280 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 2580 CG6838-RC 382..2044 13..1675 8300 99.9 Plus
ArfGAP3-RB 2307 CG6838-RB 109..1771 13..1675 8300 99.9 Plus
ArfGAP3-RA 2689 CG6838-RA 396..2058 13..1675 8300 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22715155..22715998 1529..686 4220 100 Minus
3L 28110227 3L 22716569..22716892 421..98 1620 100 Minus
3L 28110227 3L 22716049..22716204 692..537 750 98.7 Minus
3L 28110227 3L 22714944..22715090 1675..1529 720 99.3 Minus
3L 28110227 3L 22716297..22716416 539..420 600 100 Minus
3L 28110227 3L 22716971..22717055 97..13 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:33:59 has no hits.

BS10163.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:11 Download gff for BS10163.complete
Subject Subject Range Query Range Percent Splice Strand
CG6838-RC 386..2043 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:14 Download gff for BS10163.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 400..2057 17..1674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:34 Download gff for BS10163.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 400..2057 17..1674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:34 Download gff for BS10163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22716569..22716892 98..421 100 <- Minus
3L 22716971..22717051 17..97 100   Minus
3L 22714945..22715089 1530..1674 99 <- Minus
3L 22715155..22715998 686..1529 100 <- Minus
3L 22716056..22716202 539..685 100 <- Minus
3L 22716298..22716414 422..538 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:14 Download gff for BS10163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22709398..22709514 422..538 100 <- Minus
arm_3L 22708045..22708189 1530..1674 99 <- Minus
arm_3L 22708255..22709098 686..1529 100 <- Minus
arm_3L 22709156..22709302 539..685 100 <- Minus
arm_3L 22709669..22709992 98..421 100 <- Minus
arm_3L 22710071..22710151 17..97 100   Minus

BS10163.pep Sequence

Translation from 16 to 1674

> BS10163.pep
MASPAAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICI
DCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNC
STTDAQVKYNSRAAQLYRDKLCAQAQQAMKTHGTKLHLEQTDKSEGNEAA
REEDFFAQCDNEVDFNVQNNNVSKDPNPPTVAPVISVETQQGGAPSVNLL
NSVVPAAVPSSIGARKVQPKKGGLGARKVGGLGATKVKTNFADIEARANA
ANEMKTSAAAAPVVKPQTAEDELETVASMRLAYQELSMQKTREEAKLKTM
DPAKAKQMERLGMGFNLRGSDMAHSALGDMETIQQSAAPKAKLSLLESEN
FFTDFSLYGNSSSGGGGGGSSEKRESSVGGTSKLDKFELDALGYETIEPI
GGSHSNITSMFSRSNDYDKPKTSAPVKKNSGSSQTHTKGGTSTDPVIAQQ
KFGNSKGFGSDQYFASEQSSADVSASLNRFQGSRAISSSDYFGDGSPGGT
GGNRASSVNFSAPDLDVESVKESVRQGVHKVAGRLSNLANDVMTSWQDKY
GY*

BS10163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-PC 552 CG6838-PC 1..552 1..552 2833 100 Plus
ArfGAP3-PB 552 CG6838-PB 1..552 1..552 2833 100 Plus
ArfGAP3-PA 552 CG6838-PA 1..552 1..552 2833 100 Plus
ArfGAP3-PH 553 CG6838-PH 1..553 1..552 2821 99.8 Plus
ArfGAP3-PG 549 CG6838-PG 1..549 1..552 2806 99.5 Plus