Clone BS10164 Report

Search the DGRC for BS10164

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG32075-RA
Protein status:BS10164.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10164.3prime Sequence

900 bp (850 high quality bases) assembled on 2006-04-19

> BS10164.3prime
ATGGTCTAGAAAGCTTTTATTGAGCCCAAGGGAGCACACCCAATGCACAT
TTGGGCCAATCGGTATGCTTGTCTAATTTCCAAACTCCCCAGTCTGATGT
ATGCTCTTTGCTTTGAGCTGCTTGTTCCAAAAATCGTTCCAAACGGTCTA
GATTGTTGCTCTCCTCTGAAGAGCTATCTTCTTCCATAGCTTCCTCTTCA
TAAAATTCTTCAAGCTGTGCATCGCAGAGTTTAGTTAAATCCTCAATTTG
CGTCTTGGTGTATGGAGGATCTGCGAGCGGTAATAATCCTTTTAGAATGG
GCGCTGAGTAATTGCTAAATGCATCAACACGCTGCATAATAAAATCACGA
TCAAAAATCAAAGACCTGGACTTTTTGGGATTGTCGCCAAAAATAAGGGT
AACCGAGAGATCGGCATTTGAGTGTACTAACAGACTGCGCATTGTCTTAG
AAATTTTATCCGTGTTTAGGGTGGCAAAGTCCGCTGGTTTTAGTTTATCG
TTCAAATCCAGTTCGGCTTTGTACATGCGCTTCATACGGAACAGCATCCC
AAATGTTTCCAACATTTTCTTTGCCCAGTAGCTGGCTCCCAGACGCCTTT
GCTCCGACTCGTTTTGGTTTTCACTCAGTTGAACTAGGGCCAAAAAAACC
TTCTCGATATATCCCTGCACGGCCAATAGACGGAAGAGTCCCTGTGTGGC
TGCAATGATGACATCCTCGTTGTCGTCGATTTCCAAGCCAACGCCAAGGA
AGTATTTCATTTTAAGCAGGCATTTTGTATATATGTCCAGCAGATCCTTC
ATCGATGATGACTCCTTTTTGACAACGCACTTAGATCACCTAACACAGCA
CTCAGAATTTCTTTCGATGTCTTCGCCTTCTTGCTGGAGGAATAGACTCG

BS10164.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-PA 1626 CG32075-RA 820..1626 823..17 4035 100 Minus
CG32075-PA 1626 CG32075-RA 742..819 900..823 365 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-RB 1751 CG32075-RB 819..1704 900..16 4390 99.8 Minus
CG32075-RA 1955 CG32075-RA 1023..1908 900..16 4390 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11063462..11063860 503..900 1930 99.5 Plus
3L 28110227 3L 11062903..11063124 67..288 1110 100 Plus
3L 28110227 3L 11063187..11063402 288..503 1080 100 Plus
3L 28110227 3L 11062773..11062823 16..66 255 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:04:23 has no hits.

BS10164.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:24 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-PA 742..1626 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:21 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-PA 742..1626 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:21 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1023..1908 16..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:34 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1023..1908 16..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:34 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11062773..11062823 16..66 100 <- Plus
3L 11062903..11063123 67..287 100 <- Plus
3L 11063187..11063401 288..502 100 <- Plus
3L 11063462..11063860 503..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:21 Download gff for BS10164.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11055873..11055923 16..66 100 <- Plus
arm_3L 11056003..11056223 67..287 100 <- Plus
arm_3L 11056287..11056501 288..502 100 <- Plus
arm_3L 11056562..11056960 503..900 99   Plus

BS10164.5prime Sequence

913 bp (784 high quality bases) assembled on 2006-04-19

> BS10164.5prime
GAAGTTATCAGTCGACATGGCTGTTGCAAAGAAGGAAAAATTTGAGGCAA
AAAAGAAAAGCCCTGAAAAGGGAAAACAGCAGAAAGCCAAAGTTGTTCCT
GTCACACCGCCACCAAATGTAAAACAACGAACTGTGGTCACTCCTTGGCG
AGACACGCTGGAATTTAATACAACGTACAAATGGTTGTTTGGCAAGTCCA
ACACACCAGCCACATGGCGTCAAGCGCTCAGTAAAATCCGCATTTGGTGT
CTGCGAAGAGGAAGTCTCTGCCCGGCAGCGGTTTTGGCCACATCGGTGCT
TGTTCAGGCGCACTTGGAGGACCAGGAGGGCAGCGCCAAAATACAGGACA
CCTATGCCAGTGCCTTTACACGATTCTACAACTTTATGTCCTCCATTATC
CAGGGACACAACATGTCCAGCATGTATGAAACGGCCAAGGAACTGGGCCT
CCAGTCGTTCATCGTTGATCTGCGCCACTTGTGCGCCCATGGACAGGAGC
TGCCGCCTGTGGAGGTGCTGAGAAACACCTCGAATCATTGTCTGGAGTGG
CTGCGCACCTACTACTGGTTGCCACACATGGAAACCATGTCCAATTTGGA
TGCTGGCAAACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGA
CAGATCTTCTGGAGATCTACGATCTAACCCTGGAGTGCCATATCAAGGGG
GCTGAGAAACTAAAGGCCATTAGCAAGCTAAAATCCAGTGGTGAATTCAA
TAAGATACGAGTCTACTCCTCCAGCAAGAAGGCGAAGACATCGAAAGAAA
TTCTGAGTGCTGTGTTAGGTGATCTAAGTGCGTTGGTCAAAAAGGAGTCA
TCATCGATGAAAGATCTGCTGGACATATATACAAAATGCCTGCTTAAAAT
GAAATACTTCCCT

BS10164.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-PA 1626 CG32075-RA 1..895 17..911 4450 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-RB 1751 CG32075-RB 77..972 16..911 4465 99.9 Plus
CG32075-RA 1955 CG32075-RA 281..1176 16..911 4465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11063707..11064461 911..157 3760 99.9 Minus
3L 28110227 3L 11064520..11064661 157..16 710 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:16:53 has no hits.

BS10164.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:25 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-PA 1..896 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:22 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-PA 1..896 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:09 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 281..1177 16..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:50:00 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 281..1177 16..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:50:00 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11063705..11064461 157..913 99 <- Minus
3L 11064521..11064661 16..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:09 Download gff for BS10164.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11056805..11057561 157..913 99 <- Minus
arm_3L 11057621..11057761 16..156 100   Minus

BS10164.complete Sequence

1658 bp (1658 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636579

> BS10164.complete
GAAGTTATCAGTCGACATGGCTGTTGCAAAGAAGGAAAAATTTGAGGCAA
AAAAGAAAAGCCCTGAAAAGGGAAAACAGCAGAAAGCCAAAGTTGTTCCT
GTCACACCGCCACCAAATGTAAAACAACGAACTGTGGTCACTCCTTGGCG
AGACACGCTGGAATTTAATACAACGTACAAATGGTTGTTTGGCAAGTCCA
ACACACCAGCCACATGGCGTCAAGCGCTCAGTAAAATCCGCATTTGGTGT
CTGCGAAGAGGAAGTCTCTGCCCGGCAGCGGTTTTGGCCACATCGGTGCT
TGTTCAGGCGCACTTGGAGGACCAGGAGGGCAGCGCCAAAATACAGGACA
CCTATGCCAGTGCCTTTACACGATTCTACAACTTTATGTCCTCCATTATC
CAGGGACACAACATGTCCAGCATGTATGAAACGGCCAAGGAACTGGGCCT
CCAGTCGTTCATCGTTGATCTGCGCCACTTGTGCGCCCATGGACAGGAGC
TGCCGCCTGTGGAGGTGCTGAGAAACACCTCGAATCATTGTCTGGAGTGG
CTGCGCACCTACTACTGGTTGCCACACATGGAAACCATGTCCAATTTGGA
TGCTGGCAAACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGA
CAGATCTTCTGGAGATCTACGATCTAACCCTGGAGTGCCATATCAAGGGG
GCTGAGAAACTAAAGGCCATTAGCAAGCTAAAATCCAGTGGTGAATTCAA
TAAGATACGAGTCTACTCCTCCAGCAAGAAGGCGAAGACATCGAAAGAAA
TTCTGAGTGCTGTGTTAGGTGATCTAAGTGCGTTGGTCAAAAAGGAGTCA
TCATCGATGAAGGATCTGCTGGACATATATACAAAATGCCTGCTTAAAAT
GAAATACTTCCTTGGCGTTGGCTTGGAAATCGACGACAACGAGGATGTCA
TCATTGCAGCCACACAGGGACTCTTCCGTCTATTGGCCGTGCAGGGATAT
ATCGAGAAGGTTTTTTTGGCCCTAGTTCAACTGAGTGAAAACCAAAACGA
GTCGGAGCAAAGGCGTCTGGGAGCCAGCTACTGGGCAAAGAAAATGTTGG
AAACATTTGGGATGCTGTTCCGTATGAAGCGCATGTACAAAGCCGAACTG
GATTTGAACGATAAACTAAAACCAGCGGACTTTGCCACCCTAAACACGGA
TAAAATTTCTAAGACAATGCGCAGTCTGTTAGTACACTCAAATGCCGATC
TCTCGGTTACCCTTATTTTTGGCGACAATCCCAAAAAGTCCAGGTCTTTG
ATTTTTGATCGTGATTTTATTATGCAGCGTGTTGATGCATTTAGCAATTA
CTCAGCGCCCATTCTAAAAGGATTATTACCGCTCGCAGATCCTCCATACA
CCAAGACGCAAATTGAGGATTTAACTAAACTCTGCGATGCACAGCTTGAA
GAATTTTATGAAGAGGAAGCTATGGAAGAAGATAGCTCTTCAGAGGAGAG
CAACAATCTAGACCGTTTGGAACGATTTTTGGAACAAGCAGCTCAAAGCA
AAGAGCATACATCAGACTGGGGAGTTTGGAAATTAGACAAGCATACCGAT
TGGCCCAAATGTGCATTGGGTGTGCTCCCTTGGGCTCAATAAAAGCTTTC
TAGACCAT

BS10164.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-RB 1626 CG32075-PB 1..1626 17..1642 8130 100 Plus
CG32075-RA 1626 CG32075-PA 1..1626 17..1642 8130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-RB 1751 CG32075-RB 77..1704 16..1643 8140 100 Plus
CG32075-RA 1955 CG32075-RA 281..1908 16..1643 8140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11063462..11064461 1156..157 5000 100 Minus
3L 28110227 3L 11062903..11063124 1592..1371 1110 100 Minus
3L 28110227 3L 11063187..11063402 1371..1156 1080 100 Minus
3L 28110227 3L 11064520..11064661 157..16 710 100 Minus
3L 28110227 3L 11062773..11062823 1643..1593 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:29:26 has no hits.

BS10164.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:50 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:16 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 277..1904 16..1643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:36 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 282..1905 17..1640 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:50 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 277..1904 16..1643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:48 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 282..1905 17..1640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:48 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11062776..11062823 1593..1640 100 <- Minus
3L 11062903..11063123 1372..1592 100 <- Minus
3L 11063187..11063401 1157..1371 100 <- Minus
3L 11063462..11064461 157..1156 100 <- Minus
3L 11064521..11064660 17..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:36 Download gff for BS10164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11055876..11055923 1593..1640 100 <- Minus
arm_3L 11056003..11056223 1372..1592 100 <- Minus
arm_3L 11056287..11056501 1157..1371 100 <- Minus
arm_3L 11056562..11057561 157..1156 100 <- Minus
arm_3L 11057621..11057760 17..156 100   Minus

BS10164.pep Sequence

Translation from 16 to 1641

> BS10164.pep
MAVAKKEKFEAKKKSPEKGKQQKAKVVPVTPPPNVKQRTVVTPWRDTLEF
NTTYKWLFGKSNTPATWRQALSKIRIWCLRRGSLCPAAVLATSVLVQAHL
EDQEGSAKIQDTYASAFTRFYNFMSSIIQGHNMSSMYETAKELGLQSFIV
DLRHLCAHGQELPPVEVLRNTSNHCLEWLRTYYWLPHMETMSNLDAGKLH
RKDKLKFEKAVTDLLEIYDLTLECHIKGAEKLKAISKLKSSGEFNKIRVY
SSSKKAKTSKEILSAVLGDLSALVKKESSSMKDLLDIYTKCLLKMKYFLG
VGLEIDDNEDVIIAATQGLFRLLAVQGYIEKVFLALVQLSENQNESEQRR
LGASYWAKKMLETFGMLFRMKRMYKAELDLNDKLKPADFATLNTDKISKT
MRSLLVHSNADLSVTLIFGDNPKKSRSLIFDRDFIMQRVDAFSNYSAPIL
KGLLPLADPPYTKTQIEDLTKLCDAQLEEFYEEEAMEEDSSSEESNNLDR
LERFLEQAAQSKEHTSDWGVWKLDKHTDWPKCALGVLPWAQ*

BS10164.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-PB 541 CG32075-PB 1..541 1..541 2798 100 Plus
CG32075-PA 541 CG32075-PA 1..541 1..541 2798 100 Plus