Clone Sequence Records
BS10164.3prime Sequence
900 bp (850 high quality bases) assembled on 2006-04-19
> BS10164.3prime
ATGGTCTAGAAAGCTTTTATTGAGCCCAAGGGAGCACACCCAATGCACAT
TTGGGCCAATCGGTATGCTTGTCTAATTTCCAAACTCCCCAGTCTGATGT
ATGCTCTTTGCTTTGAGCTGCTTGTTCCAAAAATCGTTCCAAACGGTCTA
GATTGTTGCTCTCCTCTGAAGAGCTATCTTCTTCCATAGCTTCCTCTTCA
TAAAATTCTTCAAGCTGTGCATCGCAGAGTTTAGTTAAATCCTCAATTTG
CGTCTTGGTGTATGGAGGATCTGCGAGCGGTAATAATCCTTTTAGAATGG
GCGCTGAGTAATTGCTAAATGCATCAACACGCTGCATAATAAAATCACGA
TCAAAAATCAAAGACCTGGACTTTTTGGGATTGTCGCCAAAAATAAGGGT
AACCGAGAGATCGGCATTTGAGTGTACTAACAGACTGCGCATTGTCTTAG
AAATTTTATCCGTGTTTAGGGTGGCAAAGTCCGCTGGTTTTAGTTTATCG
TTCAAATCCAGTTCGGCTTTGTACATGCGCTTCATACGGAACAGCATCCC
AAATGTTTCCAACATTTTCTTTGCCCAGTAGCTGGCTCCCAGACGCCTTT
GCTCCGACTCGTTTTGGTTTTCACTCAGTTGAACTAGGGCCAAAAAAACC
TTCTCGATATATCCCTGCACGGCCAATAGACGGAAGAGTCCCTGTGTGGC
TGCAATGATGACATCCTCGTTGTCGTCGATTTCCAAGCCAACGCCAAGGA
AGTATTTCATTTTAAGCAGGCATTTTGTATATATGTCCAGCAGATCCTTC
ATCGATGATGACTCCTTTTTGACAACGCACTTAGATCACCTAACACAGCA
CTCAGAATTTCTTTCGATGTCTTCGCCTTCTTGCTGGAGGAATAGACTCG
BS10164.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-PA | 1626 | CG32075-RA | 820..1626 | 823..17 | 4035 | 100 | Minus |
CG32075-PA | 1626 | CG32075-RA | 742..819 | 900..823 | 365 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-RB | 1751 | CG32075-RB | 819..1704 | 900..16 | 4390 | 99.8 | Minus |
CG32075-RA | 1955 | CG32075-RA | 1023..1908 | 900..16 | 4390 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11063462..11063860 | 503..900 | 1930 | 99.5 | Plus |
3L | 28110227 | 3L | 11062903..11063124 | 67..288 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 11063187..11063402 | 288..503 | 1080 | 100 | Plus |
3L | 28110227 | 3L | 11062773..11062823 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:04:23 has no hits.
BS10164.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:24 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-PA | 742..1626 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:21 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-PA | 742..1626 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:21 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 1023..1908 | 16..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:34 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 1023..1908 | 16..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:34 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062773..11062823 | 16..66 | 100 | <- | Plus |
3L | 11062903..11063123 | 67..287 | 100 | <- | Plus |
3L | 11063187..11063401 | 288..502 | 100 | <- | Plus |
3L | 11063462..11063860 | 503..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:21 Download gff for
BS10164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055873..11055923 | 16..66 | 100 | <- | Plus |
arm_3L | 11056003..11056223 | 67..287 | 100 | <- | Plus |
arm_3L | 11056287..11056501 | 288..502 | 100 | <- | Plus |
arm_3L | 11056562..11056960 | 503..900 | 99 | | Plus |
BS10164.5prime Sequence
913 bp (784 high quality bases) assembled on 2006-04-19
> BS10164.5prime
GAAGTTATCAGTCGACATGGCTGTTGCAAAGAAGGAAAAATTTGAGGCAA
AAAAGAAAAGCCCTGAAAAGGGAAAACAGCAGAAAGCCAAAGTTGTTCCT
GTCACACCGCCACCAAATGTAAAACAACGAACTGTGGTCACTCCTTGGCG
AGACACGCTGGAATTTAATACAACGTACAAATGGTTGTTTGGCAAGTCCA
ACACACCAGCCACATGGCGTCAAGCGCTCAGTAAAATCCGCATTTGGTGT
CTGCGAAGAGGAAGTCTCTGCCCGGCAGCGGTTTTGGCCACATCGGTGCT
TGTTCAGGCGCACTTGGAGGACCAGGAGGGCAGCGCCAAAATACAGGACA
CCTATGCCAGTGCCTTTACACGATTCTACAACTTTATGTCCTCCATTATC
CAGGGACACAACATGTCCAGCATGTATGAAACGGCCAAGGAACTGGGCCT
CCAGTCGTTCATCGTTGATCTGCGCCACTTGTGCGCCCATGGACAGGAGC
TGCCGCCTGTGGAGGTGCTGAGAAACACCTCGAATCATTGTCTGGAGTGG
CTGCGCACCTACTACTGGTTGCCACACATGGAAACCATGTCCAATTTGGA
TGCTGGCAAACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGA
CAGATCTTCTGGAGATCTACGATCTAACCCTGGAGTGCCATATCAAGGGG
GCTGAGAAACTAAAGGCCATTAGCAAGCTAAAATCCAGTGGTGAATTCAA
TAAGATACGAGTCTACTCCTCCAGCAAGAAGGCGAAGACATCGAAAGAAA
TTCTGAGTGCTGTGTTAGGTGATCTAAGTGCGTTGGTCAAAAAGGAGTCA
TCATCGATGAAAGATCTGCTGGACATATATACAAAATGCCTGCTTAAAAT
GAAATACTTCCCT
BS10164.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-PA | 1626 | CG32075-RA | 1..895 | 17..911 | 4450 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-RB | 1751 | CG32075-RB | 77..972 | 16..911 | 4465 | 99.9 | Plus |
CG32075-RA | 1955 | CG32075-RA | 281..1176 | 16..911 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11063707..11064461 | 911..157 | 3760 | 99.9 | Minus |
3L | 28110227 | 3L | 11064520..11064661 | 157..16 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:16:53 has no hits.
BS10164.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:25 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-PA | 1..896 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:22 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-PA | 1..896 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:09 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 281..1177 | 16..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:50:00 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 281..1177 | 16..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:50:00 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11063705..11064461 | 157..913 | 99 | <- | Minus |
3L | 11064521..11064661 | 16..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:09 Download gff for
BS10164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11056805..11057561 | 157..913 | 99 | <- | Minus |
arm_3L | 11057621..11057761 | 16..156 | 100 | | Minus |
BS10164.complete Sequence
1658 bp (1658 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636579
> BS10164.complete
GAAGTTATCAGTCGACATGGCTGTTGCAAAGAAGGAAAAATTTGAGGCAA
AAAAGAAAAGCCCTGAAAAGGGAAAACAGCAGAAAGCCAAAGTTGTTCCT
GTCACACCGCCACCAAATGTAAAACAACGAACTGTGGTCACTCCTTGGCG
AGACACGCTGGAATTTAATACAACGTACAAATGGTTGTTTGGCAAGTCCA
ACACACCAGCCACATGGCGTCAAGCGCTCAGTAAAATCCGCATTTGGTGT
CTGCGAAGAGGAAGTCTCTGCCCGGCAGCGGTTTTGGCCACATCGGTGCT
TGTTCAGGCGCACTTGGAGGACCAGGAGGGCAGCGCCAAAATACAGGACA
CCTATGCCAGTGCCTTTACACGATTCTACAACTTTATGTCCTCCATTATC
CAGGGACACAACATGTCCAGCATGTATGAAACGGCCAAGGAACTGGGCCT
CCAGTCGTTCATCGTTGATCTGCGCCACTTGTGCGCCCATGGACAGGAGC
TGCCGCCTGTGGAGGTGCTGAGAAACACCTCGAATCATTGTCTGGAGTGG
CTGCGCACCTACTACTGGTTGCCACACATGGAAACCATGTCCAATTTGGA
TGCTGGCAAACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGA
CAGATCTTCTGGAGATCTACGATCTAACCCTGGAGTGCCATATCAAGGGG
GCTGAGAAACTAAAGGCCATTAGCAAGCTAAAATCCAGTGGTGAATTCAA
TAAGATACGAGTCTACTCCTCCAGCAAGAAGGCGAAGACATCGAAAGAAA
TTCTGAGTGCTGTGTTAGGTGATCTAAGTGCGTTGGTCAAAAAGGAGTCA
TCATCGATGAAGGATCTGCTGGACATATATACAAAATGCCTGCTTAAAAT
GAAATACTTCCTTGGCGTTGGCTTGGAAATCGACGACAACGAGGATGTCA
TCATTGCAGCCACACAGGGACTCTTCCGTCTATTGGCCGTGCAGGGATAT
ATCGAGAAGGTTTTTTTGGCCCTAGTTCAACTGAGTGAAAACCAAAACGA
GTCGGAGCAAAGGCGTCTGGGAGCCAGCTACTGGGCAAAGAAAATGTTGG
AAACATTTGGGATGCTGTTCCGTATGAAGCGCATGTACAAAGCCGAACTG
GATTTGAACGATAAACTAAAACCAGCGGACTTTGCCACCCTAAACACGGA
TAAAATTTCTAAGACAATGCGCAGTCTGTTAGTACACTCAAATGCCGATC
TCTCGGTTACCCTTATTTTTGGCGACAATCCCAAAAAGTCCAGGTCTTTG
ATTTTTGATCGTGATTTTATTATGCAGCGTGTTGATGCATTTAGCAATTA
CTCAGCGCCCATTCTAAAAGGATTATTACCGCTCGCAGATCCTCCATACA
CCAAGACGCAAATTGAGGATTTAACTAAACTCTGCGATGCACAGCTTGAA
GAATTTTATGAAGAGGAAGCTATGGAAGAAGATAGCTCTTCAGAGGAGAG
CAACAATCTAGACCGTTTGGAACGATTTTTGGAACAAGCAGCTCAAAGCA
AAGAGCATACATCAGACTGGGGAGTTTGGAAATTAGACAAGCATACCGAT
TGGCCCAAATGTGCATTGGGTGTGCTCCCTTGGGCTCAATAAAAGCTTTC
TAGACCAT
BS10164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-RB | 1626 | CG32075-PB | 1..1626 | 17..1642 | 8130 | 100 | Plus |
CG32075-RA | 1626 | CG32075-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-RB | 1751 | CG32075-RB | 77..1704 | 16..1643 | 8140 | 100 | Plus |
CG32075-RA | 1955 | CG32075-RA | 281..1908 | 16..1643 | 8140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11063462..11064461 | 1156..157 | 5000 | 100 | Minus |
3L | 28110227 | 3L | 11062903..11063124 | 1592..1371 | 1110 | 100 | Minus |
3L | 28110227 | 3L | 11063187..11063402 | 1371..1156 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 11064520..11064661 | 157..16 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11062773..11062823 | 1643..1593 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:26 has no hits.
BS10164.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:50 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 1..1626 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:16 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 277..1904 | 16..1643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:36 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 282..1905 | 17..1640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:50 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 277..1904 | 16..1643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:48 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32075-RA | 282..1905 | 17..1640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:48 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062776..11062823 | 1593..1640 | 100 | <- | Minus |
3L | 11062903..11063123 | 1372..1592 | 100 | <- | Minus |
3L | 11063187..11063401 | 1157..1371 | 100 | <- | Minus |
3L | 11063462..11064461 | 157..1156 | 100 | <- | Minus |
3L | 11064521..11064660 | 17..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:36 Download gff for
BS10164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055876..11055923 | 1593..1640 | 100 | <- | Minus |
arm_3L | 11056003..11056223 | 1372..1592 | 100 | <- | Minus |
arm_3L | 11056287..11056501 | 1157..1371 | 100 | <- | Minus |
arm_3L | 11056562..11057561 | 157..1156 | 100 | <- | Minus |
arm_3L | 11057621..11057760 | 17..156 | 100 | | Minus |
BS10164.pep Sequence
Translation from 16 to 1641
> BS10164.pep
MAVAKKEKFEAKKKSPEKGKQQKAKVVPVTPPPNVKQRTVVTPWRDTLEF
NTTYKWLFGKSNTPATWRQALSKIRIWCLRRGSLCPAAVLATSVLVQAHL
EDQEGSAKIQDTYASAFTRFYNFMSSIIQGHNMSSMYETAKELGLQSFIV
DLRHLCAHGQELPPVEVLRNTSNHCLEWLRTYYWLPHMETMSNLDAGKLH
RKDKLKFEKAVTDLLEIYDLTLECHIKGAEKLKAISKLKSSGEFNKIRVY
SSSKKAKTSKEILSAVLGDLSALVKKESSSMKDLLDIYTKCLLKMKYFLG
VGLEIDDNEDVIIAATQGLFRLLAVQGYIEKVFLALVQLSENQNESEQRR
LGASYWAKKMLETFGMLFRMKRMYKAELDLNDKLKPADFATLNTDKISKT
MRSLLVHSNADLSVTLIFGDNPKKSRSLIFDRDFIMQRVDAFSNYSAPIL
KGLLPLADPPYTKTQIEDLTKLCDAQLEEFYEEEAMEEDSSSEESNNLDR
LERFLEQAAQSKEHTSDWGVWKLDKHTDWPKCALGVLPWAQ*
BS10164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32075-PB | 541 | CG32075-PB | 1..541 | 1..541 | 2798 | 100 | Plus |
CG32075-PA | 541 | CG32075-PA | 1..541 | 1..541 | 2798 | 100 | Plus |