Clone BS10166 Report

Search the DGRC for BS10166

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptHerp-RB
Protein status:BS10166.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10166.3prime Sequence

807 bp (806 high quality bases) assembled on 2006-04-19

> BS10166.3prime
ATGGTCTAGAAAGCTTCTAGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTG
AAGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGC
ATTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAG
CAGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCA
TCTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTC
ATTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCA
TGCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTA
TTGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGAC
ACCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAAC
AACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAAT
CGCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTC
CTGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGAT
CAGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGT
ACCTCCCCGAAGTTTCGCCCAGCAATCAGTGGGACTGAGGGCAACAGGGG
TTGAGTCGGTGGCGGCAAGCCAGATTGGTTCGAACCGGGCAACGTAGAAC
GTAGAGTCAACTGCTGCATGTACTGCGCGTAAGCCTGCTGCATGTCGACT
GATAACT

BS10166.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 622..1398 793..17 3885 100 Minus
CG14536-PB 777 CG14536-RB 1..777 793..17 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1945 793..16 3890 100 Minus
Herp-RA 2117 CG14536-RA 957..1734 793..16 3890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796929..7797326 16..413 1990 100 Plus
2L 23513712 2L 7797397..7797733 414..750 1685 100 Plus
2L 23513712 2L 7798163..7798206 750..793 220 100 Plus
Blast to na_te.dros performed 2015-02-10 17:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 283..142 124 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 149..221 122 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 149..251 112 58.3 Plus

BS10166.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:28 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..793 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:27 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:17 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1734 16..793 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:28 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1734 16..793 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:28 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7796929..7797326 16..413 100 <- Plus
2L 7797397..7797732 414..749 100 <- Plus
2L 7798163..7798206 750..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:17 Download gff for BS10166.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796929..7797326 16..413 100 <- Plus
arm_2L 7797397..7797732 414..749 100 <- Plus
arm_2L 7798163..7798206 750..793 100   Plus

BS10166.5prime Sequence

807 bp (806 high quality bases) assembled on 2006-04-19

> BS10166.5prime
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCTAGAAGCTTT
CTAGACC

BS10166.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 622..1398 17..793 3885 100 Plus
CG14536-PB 777 CG14536-RB 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1945 17..794 3890 100 Plus
Herp-RA 2117 CG14536-RA 957..1734 17..794 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796929..7797326 794..397 1990 100 Minus
2L 23513712 2L 7797397..7797733 396..60 1685 100 Minus
2L 23513712 2L 7798163..7798206 60..17 220 100 Minus
Blast to na_te.dros performed 2015-02-10 04:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 527..668 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 661..589 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 661..559 112 58.3 Minus

BS10166.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:29 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:28 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:49 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1734 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:26:27 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1734 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:26:27 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7796929..7797326 397..794 100 <- Minus
2L 7797397..7797732 61..396 100 <- Minus
2L 7798163..7798206 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:49 Download gff for BS10166.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796929..7797326 397..794 100 <- Minus
arm_2L 7797397..7797732 61..396 100 <- Minus
arm_2L 7798163..7798206 17..60 100   Minus

BS10166.complete Sequence

809 bp (809 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636580

> BS10166.complete
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCTAGAAGCTTT
CTAGACCAT

BS10166.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 1398 CG14536-PC 622..1398 17..793 3885 100 Plus
Herp-RA 1398 CG14536-PA 622..1398 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1945 17..794 3890 100 Plus
Herp-RA 2117 CG14536-RA 957..1734 17..794 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796929..7797326 794..397 1990 100 Minus
2L 23513712 2L 7797397..7797733 396..60 1685 100 Minus
2L 23513712 2L 7798163..7798206 60..17 220 100 Minus
Blast to na_te.dros performed 2014-11-28 00:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 527..668 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 661..589 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 661..559 112 58.3 Minus

BS10166.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:11 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:08 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 892..1669 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:26 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1733 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:11 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 892..1669 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:29 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1733 17..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:29 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796930..7797326 397..793 100 <- Minus
2L 7797397..7797732 61..396 100 <- Minus
2L 7798163..7798206 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:26 Download gff for BS10166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796930..7797326 397..793 100 <- Minus
arm_2L 7797397..7797732 61..396 100 <- Minus
arm_2L 7798163..7798206 17..60 100   Minus

BS10166.pep Sequence

Translation from 16 to 792

> BS10166.pep
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPAL*

BS10166.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 208..465 1..258 1317 100 Plus
Herp-PA 465 CG14536-PA 208..465 1..258 1317 100 Plus