Clone Sequence Records
BS10166.3prime Sequence
807 bp (806 high quality bases) assembled on 2006-04-19
> BS10166.3prime
ATGGTCTAGAAAGCTTCTAGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTG
AAGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGC
ATTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAG
CAGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCA
TCTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTC
ATTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCA
TGCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTA
TTGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGAC
ACCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAAC
AACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAAT
CGCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTC
CTGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGAT
CAGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGT
ACCTCCCCGAAGTTTCGCCCAGCAATCAGTGGGACTGAGGGCAACAGGGG
TTGAGTCGGTGGCGGCAAGCCAGATTGGTTCGAACCGGGCAACGTAGAAC
GTAGAGTCAACTGCTGCATGTACTGCGCGTAAGCCTGCTGCATGTCGACT
GATAACT
BS10166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 622..1398 | 793..17 | 3885 | 100 | Minus |
CG14536-PB | 777 | CG14536-RB | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1945 | 793..16 | 3890 | 100 | Minus |
Herp-RA | 2117 | CG14536-RA | 957..1734 | 793..16 | 3890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796929..7797326 | 16..413 | 1990 | 100 | Plus |
2L | 23513712 | 2L | 7797397..7797733 | 414..750 | 1685 | 100 | Plus |
2L | 23513712 | 2L | 7798163..7798206 | 750..793 | 220 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 283..142 | 124 | 56.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 149..221 | 122 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 149..251 | 112 | 58.3 | Plus |
BS10166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:28 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:27 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:17 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1734 | 16..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:28 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1734 | 16..793 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:28 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796929..7797326 | 16..413 | 100 | <- | Plus |
2L | 7797397..7797732 | 414..749 | 100 | <- | Plus |
2L | 7798163..7798206 | 750..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:17 Download gff for
BS10166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796929..7797326 | 16..413 | 100 | <- | Plus |
arm_2L | 7797397..7797732 | 414..749 | 100 | <- | Plus |
arm_2L | 7798163..7798206 | 750..793 | 100 | | Plus |
BS10166.5prime Sequence
807 bp (806 high quality bases) assembled on 2006-04-19
> BS10166.5prime
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCTAGAAGCTTT
CTAGACC
BS10166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 622..1398 | 17..793 | 3885 | 100 | Plus |
CG14536-PB | 777 | CG14536-RB | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1945 | 17..794 | 3890 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 957..1734 | 17..794 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796929..7797326 | 794..397 | 1990 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 396..60 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798206 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 04:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 527..668 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 661..589 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 661..559 | 112 | 58.3 | Minus |
BS10166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:29 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:28 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:49 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1734 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:26:27 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1734 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:26:27 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796929..7797326 | 397..794 | 100 | <- | Minus |
2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
2L | 7798163..7798206 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:49 Download gff for
BS10166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796929..7797326 | 397..794 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
arm_2L | 7798163..7798206 | 17..60 | 100 | | Minus |
BS10166.complete Sequence
809 bp (809 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636580
> BS10166.complete
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCTAGAAGCTTT
CTAGACCAT
BS10166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 1398 | CG14536-PC | 622..1398 | 17..793 | 3885 | 100 | Plus |
Herp-RA | 1398 | CG14536-PA | 622..1398 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1945 | 17..794 | 3890 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 957..1734 | 17..794 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796929..7797326 | 794..397 | 1990 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 396..60 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798206 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 527..668 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 661..589 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 661..559 | 112 | 58.3 | Minus |
BS10166.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:11 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:08 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 892..1669 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:26 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1733 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:11 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 892..1669 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:29 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1733 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:29 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796930..7797326 | 397..793 | 100 | <- | Minus |
2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
2L | 7798163..7798206 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:26 Download gff for
BS10166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796930..7797326 | 397..793 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
arm_2L | 7798163..7798206 | 17..60 | 100 | | Minus |
BS10166.pep Sequence
Translation from 16 to 792
> BS10166.pep
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPAL*
BS10166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-PC | 465 | CG14536-PC | 208..465 | 1..258 | 1317 | 100 | Plus |
Herp-PA | 465 | CG14536-PA | 208..465 | 1..258 | 1317 | 100 | Plus |