Clone Sequence Records
BS10170.3prime Sequence
966 bp (824 high quality bases) assembled on 2006-04-19
> BS10170.3prime
ATGGTCTAGAAAGCTTTTACGCATCGTAGATCTGAAGATTGTCAAAGTCA
TCGAGCGTGTCCTCCGACCCCGAAGTGGTCAAGTCCGACAGCTCATCAAG
GCACTTCTGCCGCTTGCGGACATTCCAGTGCAGACCCTCGGCCAGGGAGT
CAAACCAATCGGAGATTTGGTCCTGGGAGCAAATGCTGGGCACGGGATAG
ATTGAGGTGGTCACTCGCAGGCTGTCCCCATGGTTCAGCTCCTGGTCGTT
GCGTCCGTCGAAGGAAACGCGTGAGGTGTTGCGGCTATCAGGTGAAATTG
ATATCTTTAGCTCCACTCCGGCGGGCACCACAATGGGCCTGAAGCTCAGC
GAGTGCGGGCAAATGGGCGTCACCAAAATGGCCGGCACGGAGGGATGGAT
CATGGAGGCACCGGCTGCTGCCGCATATGCTGTACTTCCCGTGGGCGTCG
ATACGATCAGGCCATCGCCCTGCACCGACGTAATGTATTTGCCCTCCAAG
AAGATATCAATGTTGCTCAGGTACGGCGAGGGTCCTCGGTTGATGACCAC
CTCGTTAAGCACCAGGATGCTATTGTTGTGGCCATTGTTATTATTGCTGC
CAGCTTTTCCTGTTTGTCCGTTGTTAAGCTCCACGTAGTTGAGCTGCCTT
TGGAAACTCGGTATCAGGAGATTACCACCCACCGAGTGCAGAAGCGATTC
CTTGCGGCGTTCGCCCTTGCGGTGGATGGAGCAGCGCAGGCGACTACGTA
GCGTTAGGGCAGCATGACCCTCCAGGACATTGGTCACCTGTTCCTGGAAG
TTGTCGCACTGGAAGGGCGTAAGAAACCCAAGGGAGCCCAGATAGAAGGC
CATCACCGGTGGGACAGATTGCTGGAACAGCTGTGAGGCGTACAGCAGAG
TGCCATCGCCTCCCAGGCAGACGATAAAGTCAATCCGATCGGCCAGGTCA
TCGCGGCCATCTTTAA
BS10170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-PA | 1563 | CG6145-RA | 614..1563 | 966..17 | 4725 | 99.8 | Minus |
CG6145-PC | 1647 | CG6145-RC | 698..1647 | 966..17 | 4725 | 99.8 | Minus |
CG6145-PB | 1263 | CG6145-RB | 314..1263 | 966..17 | 4725 | 99.8 | Minus |
CG33156-PC | 1128 | CG33156-RC | 664..846 | 481..299 | 465 | 90.1 | Minus |
CG33156-PA | 1365 | CG33156-RA | 901..1083 | 481..299 | 465 | 90.1 | Minus |
CG33156-PE | 1473 | CG33156-RE | 1009..1191 | 481..299 | 465 | 90.1 | Minus |
CG33156-PB | 1362 | CG33156-RB | 898..1080 | 481..299 | 465 | 90.1 | Minus |
CG33156-PC | 1128 | CG33156-RC | 996..1061 | 149..84 | 155 | 89.3 | Minus |
CG33156-PA | 1365 | CG33156-RA | 1233..1298 | 149..84 | 155 | 89.3 | Minus |
CG33156-PE | 1473 | CG33156-RE | 1341..1406 | 149..84 | 155 | 89.3 | Minus |
CG33156-PB | 1362 | CG33156-RB | 1230..1295 | 149..84 | 155 | 89.3 | Minus |
CG33156-PC | 1128 | CG33156-RC | 256..329 | 964..891 | 145 | 87.8 | Minus |
CG33156-PA | 1365 | CG33156-RA | 493..566 | 964..891 | 145 | 87.8 | Minus |
CG33156-PE | 1473 | CG33156-RE | 601..674 | 964..891 | 145 | 87.8 | Minus |
CG33156-PB | 1362 | CG33156-RB | 490..563 | 964..891 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-RF | 1989 | CG6145-RF | 649..1598 | 966..17 | 4735 | 99.9 | Minus |
CG6145-RE | 1843 | CG6145-RE | 503..1452 | 966..17 | 4735 | 99.9 | Minus |
CG6145-RB | 1826 | CG6145-RB | 486..1435 | 966..17 | 4735 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13538198..13538855 | 305..962 | 3275 | 99.8 | Plus |
2R | 25286936 | 2R | 13537762..13538051 | 17..306 | 1450 | 100 | Plus |
2R | 25286936 | 2R | 13548954..13549224 | 305..575 | 770 | 85.6 | Plus |
2R | 25286936 | 2R | 13549306..13549536 | 732..962 | 570 | 83.1 | Plus |
2R | 25286936 | 2R | 13548644..13548896 | 54..306 | 545 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:17 has no hits.
BS10170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:36 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-PA | 616..1563 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:38 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-PB | 316..1263 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:00 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 486..1439 | 13..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:08 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 486..1439 | 13..966 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:08 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13537758..13538049 | 13..304 | 99 | <- | Plus |
2R | 13538198..13538857 | 305..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:00 Download gff for
BS10170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9425263..9425554 | 13..304 | 99 | <- | Plus |
arm_2R | 9425703..9426362 | 305..966 | 99 | | Plus |
BS10170.5prime Sequence
879 bp (759 high quality bases) assembled on 2006-04-19
> BS10170.5prime
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCCACGGAAGTACAGCATATGCGGCAGC
BS10170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-PA | 1563 | CG6145-RA | 301..1137 | 17..853 | 4185 | 100 | Plus |
CG6145-PC | 1647 | CG6145-RC | 385..1221 | 17..853 | 4185 | 100 | Plus |
CG6145-PB | 1263 | CG6145-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG33156-PA | 1365 | CG33156-RA | 237..329 | 16..108 | 265 | 91.3 | Plus |
CG33156-PE | 1473 | CG33156-RE | 345..437 | 16..108 | 265 | 91.3 | Plus |
CG33156-PB | 1362 | CG33156-RB | 234..326 | 16..108 | 265 | 91.3 | Plus |
CG33156-PC | 1128 | CG33156-RC | 1..92 | 17..108 | 260 | 91.3 | Plus |
CG33156-PA | 1365 | CG33156-RA | 478..566 | 317..405 | 195 | 88.7 | Plus |
CG33156-PE | 1473 | CG33156-RE | 586..674 | 317..405 | 195 | 88.7 | Plus |
CG33156-PB | 1362 | CG33156-RB | 475..563 | 317..405 | 195 | 88.7 | Plus |
CG33156-PC | 1128 | CG33156-RC | 241..329 | 317..405 | 195 | 88.7 | Plus |
CG33156-PA | 1365 | CG33156-RA | 370..425 | 146..201 | 155 | 91 | Plus |
CG33156-PE | 1473 | CG33156-RE | 478..533 | 146..201 | 155 | 91 | Plus |
CG33156-PB | 1362 | CG33156-RB | 367..422 | 146..201 | 155 | 91 | Plus |
CG33156-PC | 1128 | CG33156-RC | 133..188 | 146..201 | 155 | 91 | Plus |
CG33156-PA | 1365 | CG33156-RA | 901..939 | 815..853 | 145 | 94.8 | Plus |
CG33156-PE | 1473 | CG33156-RE | 1009..1047 | 815..853 | 145 | 94.8 | Plus |
CG33156-PB | 1362 | CG33156-RB | 898..936 | 815..853 | 145 | 94.8 | Plus |
CG33156-PC | 1128 | CG33156-RC | 664..702 | 815..853 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-RF | 1989 | CG6145-RF | 336..1198 | 17..879 | 4270 | 99.8 | Plus |
CG6145-RE | 1843 | CG6145-RE | 190..1052 | 17..879 | 4270 | 99.8 | Plus |
CG6145-RB | 1826 | CG6145-RB | 173..1035 | 17..879 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13538310..13538855 | 879..334 | 2685 | 99.5 | Minus |
2R | 25286936 | 2R | 13538972..13539288 | 333..17 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 13549306..13549536 | 564..334 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13549668..13549856 | 201..16 | 445 | 83.6 | Minus |
2R | 25286936 | 2R | 13549069..13549224 | 876..721 | 360 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:32:44 has no hits.
BS10170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:37 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-PA | 293..1163 | 11..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:39 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-PC | 377..1247 | 11..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:24 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 165..1035 | 11..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:35 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 165..1035 | 11..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:35 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13538310..13538855 | 334..879 | 99 | <- | Minus |
2R | 13538972..13539296 | 11..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:24 Download gff for
BS10170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9425815..9426360 | 334..879 | 99 | <- | Minus |
arm_2R | 9426477..9426801 | 11..333 | 99 | | Minus |
BS10170.complete Sequence
1295 bp (1295 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636582
> BS10170.complete
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCACGGGAAGTACAGCATATGCGGCAGCAGCCGGTGCCTCCATGATCCA
TCCCTCCGTGCCGGCCATTTTGGTGACGCCCATTTGCCCGCACTCGCTGA
GCTTCAGGCCCATTGTGGTGCCCGCCGGAGTGGAGCTAAAGATATCAATT
TCACCTGATAGCCGCAACACCTCACGCGTTTCCTTCGACGGACGCAACGA
CCAGGAGCTGAACCATGGGGACAGCCTGCGAGTGACCACCTCAATCTATC
CCGTGCCCAGCATTTGCTCCCAGGACCAAATCTCCGATTGGTTTGACTCC
CTGGCCGAGGGTCTGCACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGA
TGAGCTGTCGGACTTGACCACTTCGGGGTCGGAGGACACGCTCGATGACT
TTGACAATCTTCAGATCTACGATGCGTAAAAGCTTTCTAGACCAT
BS10170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-RF | 1455 | CG6145-PF | 193..1455 | 17..1279 | 6315 | 100 | Plus |
CG6145-RE | 1452 | CG6145-PE | 190..1452 | 17..1279 | 6315 | 100 | Plus |
CG6145-RB | 1263 | CG6145-PB | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-RF | 1989 | CG6145-RF | 336..1598 | 17..1279 | 6315 | 100 | Plus |
CG6145-RE | 1843 | CG6145-RE | 190..1452 | 17..1279 | 6315 | 100 | Plus |
CG6145-RB | 1826 | CG6145-RB | 173..1435 | 17..1279 | 6315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13538198..13538855 | 991..334 | 3290 | 100 | Minus |
2R | 25286936 | 2R | 13538972..13539288 | 333..17 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 13537762..13538051 | 1279..990 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 13548954..13549224 | 991..721 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13549306..13549536 | 564..334 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13548644..13548896 | 1242..990 | 545 | 81 | Minus |
2R | 25286936 | 2R | 13549668..13549856 | 201..16 | 445 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:50:41 has no hits.
BS10170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:53 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:19 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 99..1373 | 11..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:11 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 173..1433 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:53 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 99..1373 | 11..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:49 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6145-RB | 173..1433 | 17..1277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:49 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13537764..13538049 | 992..1277 | 100 | <- | Minus |
2R | 13538198..13538855 | 334..991 | 100 | <- | Minus |
2R | 13538972..13539288 | 17..333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:11 Download gff for
BS10170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9425269..9425554 | 992..1277 | 100 | <- | Minus |
arm_2R | 9425703..9426360 | 334..991 | 100 | <- | Minus |
arm_2R | 9426477..9426793 | 17..333 | 100 | | Minus |
BS10170.pep Sequence
Translation from 16 to 1278
> BS10170.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKKDSQVLPPFVQLVEWLVQ
EKHMVVWVESAVLEDKLLRDDVKLEQESSKFQKVHQQYAGVRARFLDLRE
KLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASQLFQQSVPPVMAFYLGSL
GFLTPFQCDNFQEQVTNVLEGHAALTLRSRLRCSIHRKGERRKESLLHSV
GGNLLIPSFQRQLNYVELNNGQTGKAGSNNNNGHNNSILVLNEVVINRGP
SPYLSNIDIFLEGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPA
ILVTPICPHSLSFRPIVVPAGVELKISISPDSRNTSRVSFDGRNDQELNH
GDSLRVTTSIYPVPSICSQDQISDWFDSLAEGLHWNVRKRQKCLDELSDL
TTSGSEDTLDDFDNLQIYDA*
BS10170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6145-PF | 484 | CG6145-PF | 65..484 | 1..420 | 2173 | 100 | Plus |
CG6145-PE | 483 | CG6145-PE | 64..483 | 1..420 | 2173 | 100 | Plus |
CG6145-PB | 420 | CG6145-PB | 1..420 | 1..420 | 2173 | 100 | Plus |
CG6145-PC | 548 | CG6145-PC | 129..548 | 1..420 | 2173 | 100 | Plus |
CG6145-PA | 520 | CG6145-PA | 101..520 | 1..420 | 2173 | 100 | Plus |