Clone BS10170 Report

Search the DGRC for BS10170

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG6145-RB
Protein status:BS10170.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10170.3prime Sequence

966 bp (824 high quality bases) assembled on 2006-04-19

> BS10170.3prime
ATGGTCTAGAAAGCTTTTACGCATCGTAGATCTGAAGATTGTCAAAGTCA
TCGAGCGTGTCCTCCGACCCCGAAGTGGTCAAGTCCGACAGCTCATCAAG
GCACTTCTGCCGCTTGCGGACATTCCAGTGCAGACCCTCGGCCAGGGAGT
CAAACCAATCGGAGATTTGGTCCTGGGAGCAAATGCTGGGCACGGGATAG
ATTGAGGTGGTCACTCGCAGGCTGTCCCCATGGTTCAGCTCCTGGTCGTT
GCGTCCGTCGAAGGAAACGCGTGAGGTGTTGCGGCTATCAGGTGAAATTG
ATATCTTTAGCTCCACTCCGGCGGGCACCACAATGGGCCTGAAGCTCAGC
GAGTGCGGGCAAATGGGCGTCACCAAAATGGCCGGCACGGAGGGATGGAT
CATGGAGGCACCGGCTGCTGCCGCATATGCTGTACTTCCCGTGGGCGTCG
ATACGATCAGGCCATCGCCCTGCACCGACGTAATGTATTTGCCCTCCAAG
AAGATATCAATGTTGCTCAGGTACGGCGAGGGTCCTCGGTTGATGACCAC
CTCGTTAAGCACCAGGATGCTATTGTTGTGGCCATTGTTATTATTGCTGC
CAGCTTTTCCTGTTTGTCCGTTGTTAAGCTCCACGTAGTTGAGCTGCCTT
TGGAAACTCGGTATCAGGAGATTACCACCCACCGAGTGCAGAAGCGATTC
CTTGCGGCGTTCGCCCTTGCGGTGGATGGAGCAGCGCAGGCGACTACGTA
GCGTTAGGGCAGCATGACCCTCCAGGACATTGGTCACCTGTTCCTGGAAG
TTGTCGCACTGGAAGGGCGTAAGAAACCCAAGGGAGCCCAGATAGAAGGC
CATCACCGGTGGGACAGATTGCTGGAACAGCTGTGAGGCGTACAGCAGAG
TGCCATCGCCTCCCAGGCAGACGATAAAGTCAATCCGATCGGCCAGGTCA
TCGCGGCCATCTTTAA

BS10170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PA 1563 CG6145-RA 614..1563 966..17 4725 99.8 Minus
CG6145-PC 1647 CG6145-RC 698..1647 966..17 4725 99.8 Minus
CG6145-PB 1263 CG6145-RB 314..1263 966..17 4725 99.8 Minus
CG33156-PC 1128 CG33156-RC 664..846 481..299 465 90.1 Minus
CG33156-PA 1365 CG33156-RA 901..1083 481..299 465 90.1 Minus
CG33156-PE 1473 CG33156-RE 1009..1191 481..299 465 90.1 Minus
CG33156-PB 1362 CG33156-RB 898..1080 481..299 465 90.1 Minus
CG33156-PC 1128 CG33156-RC 996..1061 149..84 155 89.3 Minus
CG33156-PA 1365 CG33156-RA 1233..1298 149..84 155 89.3 Minus
CG33156-PE 1473 CG33156-RE 1341..1406 149..84 155 89.3 Minus
CG33156-PB 1362 CG33156-RB 1230..1295 149..84 155 89.3 Minus
CG33156-PC 1128 CG33156-RC 256..329 964..891 145 87.8 Minus
CG33156-PA 1365 CG33156-RA 493..566 964..891 145 87.8 Minus
CG33156-PE 1473 CG33156-RE 601..674 964..891 145 87.8 Minus
CG33156-PB 1362 CG33156-RB 490..563 964..891 145 87.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RF 1989 CG6145-RF 649..1598 966..17 4735 99.9 Minus
CG6145-RE 1843 CG6145-RE 503..1452 966..17 4735 99.9 Minus
CG6145-RB 1826 CG6145-RB 486..1435 966..17 4735 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13538198..13538855 305..962 3275 99.8 Plus
2R 25286936 2R 13537762..13538051 17..306 1450 100 Plus
2R 25286936 2R 13548954..13549224 305..575 770 85.6 Plus
2R 25286936 2R 13549306..13549536 732..962 570 83.1 Plus
2R 25286936 2R 13548644..13548896 54..306 545 81 Plus
Blast to na_te.dros performed on 2015-02-10 21:42:17 has no hits.

BS10170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:36 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-PA 616..1563 17..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:38 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-PB 316..1263 17..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:00 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 486..1439 13..966 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:08 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 486..1439 13..966 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:08 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13537758..13538049 13..304 99 <- Plus
2R 13538198..13538857 305..966 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:00 Download gff for BS10170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9425263..9425554 13..304 99 <- Plus
arm_2R 9425703..9426362 305..966 99   Plus

BS10170.5prime Sequence

879 bp (759 high quality bases) assembled on 2006-04-19

> BS10170.5prime
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCCACGGAAGTACAGCATATGCGGCAGC

BS10170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PA 1563 CG6145-RA 301..1137 17..853 4185 100 Plus
CG6145-PC 1647 CG6145-RC 385..1221 17..853 4185 100 Plus
CG6145-PB 1263 CG6145-RB 1..837 17..853 4185 100 Plus
CG33156-PA 1365 CG33156-RA 237..329 16..108 265 91.3 Plus
CG33156-PE 1473 CG33156-RE 345..437 16..108 265 91.3 Plus
CG33156-PB 1362 CG33156-RB 234..326 16..108 265 91.3 Plus
CG33156-PC 1128 CG33156-RC 1..92 17..108 260 91.3 Plus
CG33156-PA 1365 CG33156-RA 478..566 317..405 195 88.7 Plus
CG33156-PE 1473 CG33156-RE 586..674 317..405 195 88.7 Plus
CG33156-PB 1362 CG33156-RB 475..563 317..405 195 88.7 Plus
CG33156-PC 1128 CG33156-RC 241..329 317..405 195 88.7 Plus
CG33156-PA 1365 CG33156-RA 370..425 146..201 155 91 Plus
CG33156-PE 1473 CG33156-RE 478..533 146..201 155 91 Plus
CG33156-PB 1362 CG33156-RB 367..422 146..201 155 91 Plus
CG33156-PC 1128 CG33156-RC 133..188 146..201 155 91 Plus
CG33156-PA 1365 CG33156-RA 901..939 815..853 145 94.8 Plus
CG33156-PE 1473 CG33156-RE 1009..1047 815..853 145 94.8 Plus
CG33156-PB 1362 CG33156-RB 898..936 815..853 145 94.8 Plus
CG33156-PC 1128 CG33156-RC 664..702 815..853 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RF 1989 CG6145-RF 336..1198 17..879 4270 99.8 Plus
CG6145-RE 1843 CG6145-RE 190..1052 17..879 4270 99.8 Plus
CG6145-RB 1826 CG6145-RB 173..1035 17..879 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13538310..13538855 879..334 2685 99.5 Minus
2R 25286936 2R 13538972..13539288 333..17 1585 100 Minus
2R 25286936 2R 13549306..13549536 564..334 585 83.5 Minus
2R 25286936 2R 13549668..13549856 201..16 445 83.6 Minus
2R 25286936 2R 13549069..13549224 876..721 360 82.1 Minus
Blast to na_te.dros performed on 2015-02-12 00:32:44 has no hits.

BS10170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:37 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-PA 293..1163 11..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:39 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-PC 377..1247 11..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:24 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 165..1035 11..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:35 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 165..1035 11..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:35 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13538310..13538855 334..879 99 <- Minus
2R 13538972..13539296 11..333 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:24 Download gff for BS10170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9425815..9426360 334..879 99 <- Minus
arm_2R 9426477..9426801 11..333 99   Minus

BS10170.complete Sequence

1295 bp (1295 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636582

> BS10170.complete
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCACGGGAAGTACAGCATATGCGGCAGCAGCCGGTGCCTCCATGATCCA
TCCCTCCGTGCCGGCCATTTTGGTGACGCCCATTTGCCCGCACTCGCTGA
GCTTCAGGCCCATTGTGGTGCCCGCCGGAGTGGAGCTAAAGATATCAATT
TCACCTGATAGCCGCAACACCTCACGCGTTTCCTTCGACGGACGCAACGA
CCAGGAGCTGAACCATGGGGACAGCCTGCGAGTGACCACCTCAATCTATC
CCGTGCCCAGCATTTGCTCCCAGGACCAAATCTCCGATTGGTTTGACTCC
CTGGCCGAGGGTCTGCACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGA
TGAGCTGTCGGACTTGACCACTTCGGGGTCGGAGGACACGCTCGATGACT
TTGACAATCTTCAGATCTACGATGCGTAAAAGCTTTCTAGACCAT

BS10170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RF 1455 CG6145-PF 193..1455 17..1279 6315 100 Plus
CG6145-RE 1452 CG6145-PE 190..1452 17..1279 6315 100 Plus
CG6145-RB 1263 CG6145-PB 1..1263 17..1279 6315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RF 1989 CG6145-RF 336..1598 17..1279 6315 100 Plus
CG6145-RE 1843 CG6145-RE 190..1452 17..1279 6315 100 Plus
CG6145-RB 1826 CG6145-RB 173..1435 17..1279 6315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13538198..13538855 991..334 3290 100 Minus
2R 25286936 2R 13538972..13539288 333..17 1585 100 Minus
2R 25286936 2R 13537762..13538051 1279..990 1450 100 Minus
2R 25286936 2R 13548954..13549224 991..721 770 85.6 Minus
2R 25286936 2R 13549306..13549536 564..334 585 83.5 Minus
2R 25286936 2R 13548644..13548896 1242..990 545 81 Minus
2R 25286936 2R 13549668..13549856 201..16 445 83.6 Minus
Blast to na_te.dros performed on 2014-11-27 07:50:41 has no hits.

BS10170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:53 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:19 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 99..1373 11..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:11 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 173..1433 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:53 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 99..1373 11..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:49 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 173..1433 17..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:49 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537764..13538049 992..1277 100 <- Minus
2R 13538198..13538855 334..991 100 <- Minus
2R 13538972..13539288 17..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:11 Download gff for BS10170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9425269..9425554 992..1277 100 <- Minus
arm_2R 9425703..9426360 334..991 100 <- Minus
arm_2R 9426477..9426793 17..333 100   Minus

BS10170.pep Sequence

Translation from 16 to 1278

> BS10170.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKKDSQVLPPFVQLVEWLVQ
EKHMVVWVESAVLEDKLLRDDVKLEQESSKFQKVHQQYAGVRARFLDLRE
KLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASQLFQQSVPPVMAFYLGSL
GFLTPFQCDNFQEQVTNVLEGHAALTLRSRLRCSIHRKGERRKESLLHSV
GGNLLIPSFQRQLNYVELNNGQTGKAGSNNNNGHNNSILVLNEVVINRGP
SPYLSNIDIFLEGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPA
ILVTPICPHSLSFRPIVVPAGVELKISISPDSRNTSRVSFDGRNDQELNH
GDSLRVTTSIYPVPSICSQDQISDWFDSLAEGLHWNVRKRQKCLDELSDL
TTSGSEDTLDDFDNLQIYDA*

BS10170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PF 484 CG6145-PF 65..484 1..420 2173 100 Plus
CG6145-PE 483 CG6145-PE 64..483 1..420 2173 100 Plus
CG6145-PB 420 CG6145-PB 1..420 1..420 2173 100 Plus
CG6145-PC 548 CG6145-PC 129..548 1..420 2173 100 Plus
CG6145-PA 520 CG6145-PA 101..520 1..420 2173 100 Plus