Clone Sequence Records
BS10172.3prime Sequence
959 bp (835 high quality bases) assembled on 2006-04-19
> BS10172.3prime
ATGGTCTAGAAAGCTTTTACAAGTTTTGGGCGAGCGATTCGATCTCGTCC
AGAAAGTAGACCATGTCCGACTCCTCCAGGCAGGAGTTCTGCAGCACCAG
GCGAAAGAAGTTGGGCAGCTGGCGCAACGGCTGGTACGTGATCATCATGG
AGCCCTTCTTGATCATGCCCTCCTTGACCTTCGGCGCCACCTTATGCAGA
CGGTCGTAGAACTCGCGATTGCGCTCCATTTCCCGCAGACCGGGCGGCAC
ATACCAGAAGCTAATGTTGGTGCACTCGGGACTCTCGAGGACGAGCTCGA
ATCCAGGACGCTCCCTCACCTTGGCCGTGAAGAACTCGGCCATGCGGAAG
ACCTTCTCGACATGCGCCTCCAGACCCTGGGTGCCCTTCGCCTTCCACAT
GAACCAGAACTTGAAGACATCCGCTCGTCGGCCGCACTGGATGTGCTTGT
CGCCGGTGTCGAAGGATGTGTCATAGAACTTGTCCTTCTGGAACAAGTAT
GTCGCATTGGTCGAATGGCACTGGGCCAGCACCTGCTGGTGACGCGTCAG
GAAGGTGGAACACTGTTGCGAGGCAGCCAGCAGCTTGTGTGGATTCCAAG
TGACCGAATCAGCCCGTTCGATGCCATTGAGCAGATGGCGATACTTCTTG
GACATGAGCGCACCGCCACCCCAAGCCGCATCCACGTGCATCCACATGTT
GTACTTCTTGCACACCTCCGAGATTCCAGCCAGATCATCGAAGGCGCCCA
GCACAGTGGTACCCGCTGTGGCCGATACCATCAGCGGCTGCCAGCCGTTC
TCCAGGCACAGCTTCACCTGTTTCTCCAGGTCGCTCAGCCGCATCTTGCC
CACCTCGTTGGTGGCTATCTTGCGCACATGATCGCTGCCGAAGCCCATGA
ACATGGCCAGCTTCTCCACGGAGTAGTGCGCGTCCTCCGAGGTGAAGATA
ATCAGCGGG
BS10172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7811-PA | 1728 | b-RA | 787..1728 | 958..17 | 4710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b-RC | 2026 | CG7811-RC | 926..1868 | 958..16 | 4715 | 100 | Minus |
| b-RB | 2135 | CG7811-RB | 926..1868 | 958..16 | 4715 | 100 | Minus |
| b-RA | 2026 | CG7811-RA | 926..1868 | 958..16 | 4715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13823113..13823712 | 615..16 | 3000 | 100 | Minus |
| 2L | 23513712 | 2L | 13822706..13823050 | 958..614 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:44:57 has no hits.
BS10172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:31:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:43 Download gff for
BS10172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7811-PA | 786..1728 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:54 Download gff for
BS10172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 925..1868 | 16..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:59:46 Download gff for
BS10172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 925..1868 | 16..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:59:46 Download gff for
BS10172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13822705..13823049 | 615..959 | 99 | -> | Minus |
| 2L | 13823114..13823712 | 16..614 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:54 Download gff for
BS10172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13822705..13823049 | 615..959 | 99 | -> | Minus |
| arm_2L | 13823114..13823712 | 16..614 | 100 | | Minus |
BS10172.5prime Sequence
912 bp (818 high quality bases) assembled on 2006-04-19
> BS10172.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAC
CAACGAGGTGGG
BS10172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7811-PA | 1728 | b-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b-RC | 2026 | CG7811-RC | 140..1035 | 17..912 | 4480 | 100 | Plus |
| b-RB | 2135 | CG7811-RB | 140..1035 | 17..912 | 4480 | 100 | Plus |
| b-RA | 2026 | CG7811-RA | 140..1035 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13821387..13822148 | 17..778 | 3810 | 100 | Plus |
| 2L | 23513712 | 2L | 13822680..13822815 | 777..912 | 680 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 4302..4408 | 311..426 | 145 | 62.9 | Plus |
BS10172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:31:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:45 Download gff for
BS10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7811-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:42:44 Download gff for
BS10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 133..1035 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:42:51 Download gff for
BS10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 133..1035 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:42:51 Download gff for
BS10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13821380..13822148 | 9..778 | 99 | -> | Plus |
| 2L | 13822682..13822815 | 779..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:42:44 Download gff for
BS10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13821380..13822148 | 9..778 | 99 | -> | Plus |
| arm_2L | 13822682..13822815 | 779..912 | 100 | | Plus |
BS10172.complete Sequence
1760 bp (1760 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636583
> BS10172.complete
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAC
CAACGAGGTGGGCAAGATGCGGCTGAGCGACCTGGAGAAACAGGTGAAGC
TGTGCCTGGAGAACGGCTGGCAGCCGCTGATGGTATCGGCCACAGCGGGT
ACCACTGTGCTGGGCGCCTTCGATGATCTGGCTGGAATCTCGGAGGTGTG
CAAGAAGTACAACATGTGGATGCACGTGGATGCGGCTTGGGGTGGCGGTG
CGCTCATGTCCAAGAAGTATCGCCATCTGCTCAATGGCATCGAACGGGCT
GATTCGGTCACTTGGAATCCACACAAGCTGCTGGCTGCCTCGCAACAGTG
TTCCACCTTCCTGACGCGTCACCAGCAGGTGCTGGCCCAGTGCCATTCGA
CCAATGCGACATACTTGTTCCAGAAGGACAAGTTCTATGACACATCCTTC
GACACCGGCGACAAGCACATCCAGTGCGGCCGACGAGCGGATGTCTTCAA
GTTCTGGTTCATGTGGAAGGCGAAGGGCACCCAGGGTCTGGAGGCGCATG
TCGAGAAGGTCTTCCGCATGGCCGAGTTCTTCACGGCCAAGGTGAGGGAG
CGTCCTGGATTCGAGCTCGTCCTCGAGAGTCCCGAGTGCACCAACATTAG
CTTCTGGTATGTGCCGCCCGGTCTGCGGGAAATGGAGCGCAATCGCGAGT
TCTACGACCGTCTGCATAAGGTGGCGCCGAAGGTCAAGGAGGGCATGATC
AAGAAGGGCTCCATGATGATCACGTACCAGCCGTTGCGCCAGCTGCCCAA
CTTCTTTCGCCTGGTGCTGCAGAACTCCTGCCTGGAGGAGTCGGACATGG
TCTACTTTCTGGACGAGATCGAATCGCTCGCCCAAAACTTGTAAAAGCTT
TCTAGACCAT
BS10172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b-RB | 1728 | CG7811-PB | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| b-RA | 1728 | CG7811-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| b-RC | 1545 | CG7811-PC | 1..1545 | 200..1744 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b-RC | 2026 | CG7811-RC | 140..1868 | 17..1745 | 8645 | 100 | Plus |
| b-RB | 2135 | CG7811-RB | 140..1868 | 17..1745 | 8645 | 100 | Plus |
| b-RA | 2026 | CG7811-RA | 140..1868 | 17..1745 | 8645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13821387..13822148 | 17..778 | 3810 | 100 | Plus |
| 2L | 23513712 | 2L | 13823113..13823712 | 1146..1745 | 3000 | 100 | Plus |
| 2L | 23513712 | 2L | 13822680..13823050 | 777..1147 | 1855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:42:50 has no hits.
BS10172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:33 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 1..1728 | 17..1744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:05 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 178..1913 | 9..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:05 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 140..1865 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:33 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 178..1913 | 9..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:20 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b-RA | 140..1865 | 17..1742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:20 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13821387..13822148 | 17..778 | 100 | -> | Plus |
| 2L | 13822682..13823049 | 779..1146 | 100 | -> | Plus |
| 2L | 13823114..13823709 | 1147..1742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:05 Download gff for
BS10172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13821387..13822148 | 17..778 | 100 | -> | Plus |
| arm_2L | 13822682..13823049 | 779..1146 | 100 | -> | Plus |
| arm_2L | 13823114..13823709 | 1147..1742 | 100 | | Plus |
BS10172.pep Sequence
Translation from 16 to 1743
> BS10172.pep
MLASENFPTHHFKESIFKPYSTTSGDDLASVSPLTATAALVASTSSPADS
TSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASHPAAEFEGFI
RACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLR
ELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVA
PLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHS
PESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGK
MRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNM
WMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLT
RHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMW
KAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLESPECTNISFWYVP
PGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV
LQNSCLEESDMVYFLDEIESLAQNL*
BS10172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b-PB | 575 | CG7811-PB | 1..575 | 1..575 | 3024 | 100 | Plus |
| b-PA | 575 | CG7811-PA | 1..575 | 1..575 | 3024 | 100 | Plus |
| b-PC | 514 | CG7811-PC | 1..514 | 62..575 | 2723 | 100 | Plus |
| Gad1-PD | 510 | CG14994-PD | 32..510 | 95..575 | 1097 | 43.7 | Plus |
| Gad1-PC | 510 | CG14994-PC | 32..510 | 95..575 | 1097 | 43.7 | Plus |
