Clone BS10177 Report

Search the DGRC for BS10177

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptSwip-1-RA
Protein status:BS10177.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10177.3prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-19

> BS10177.3prime
ATGGTCTAGAAAGCTTCTACTGGAAGATCGCTGCCCGCTGCTGGAACTGC
TGACGCCGCTGGGCCCGCTCCTCCTCCTCTCGCCGGCGCTCCTCCTGCTC
CGCCCGAATCTCGTCGTGGAACTTGTTCGTCCGCAGCTGTTGCTCAATTT
TCGCCTCGAAGAAGTTCTTGGCTCCGCTCACTCCCACCTGCTCCACATCG
ACCTCCGTGAGGCGGGCCAGCTGATTCAGCCCAGAATCGGAGTCCAGTTC
CCCGGCCTGGGCCTTCCTGAAGATCAGCAAGAACTCTCGGAATGAAATCT
TGCCATCGTTATCCTCGTCCACCTCGGCAATCATCTGCTTGAGTCCCAGA
TGGGTTTGCGGAGCGCCCAGCTTCTCCATCATGAACTTCAGCTCCTGCAG
GTCCAAGAAGCCATCACGAGCCGTATCGTATGTATTGAAGGTCTTCTGGT
AGTCCTTGATCTGGTTACGGGAGAACTCGGGGAAGTCGGTGTAGACGTTG
ACCACTTTGTAGGTGCGACGCACCTCGATGCCCGCCTCCTGGGACTCCAT
GATCTCCTGGCGCCGATTGAGGATGTGCGTCAGCTCGGAGCTGTCCGTGT
TGGTGGTGCTGCTGGGGCTGTCCACGCTGTCCTTGTTGGAGGCGGATGAG
GCGTTCGAGGAAACGGACATGTCGACTGATAACT

BS10177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10641-PA 654 CG10641-RA 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1025 670..16 3275 100 Minus
Swip-1-RA 1628 CG10641-RA 371..1025 670..16 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978354..18978769 16..431 2080 100 Plus
2L 23513712 2L 18986672..18986910 432..670 1195 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:12:30 has no hits.

BS10177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:51 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:58 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:07 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1031 11..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:28 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1031 11..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:28 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18986672..18986910 432..670 100   Plus
2L 18978348..18978769 11..431 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:07 Download gff for BS10177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978348..18978769 11..431 99 <- Plus
arm_2L 18986672..18986910 432..670 100   Plus

BS10177.5prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-19

> BS10177.5prime
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGTAGAAGCTTTCTAGACC

BS10177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10641-PA 654 CG10641-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1025 17..671 3275 100 Plus
Swip-1-RA 1628 CG10641-RA 371..1025 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978354..18978769 671..256 2080 100 Minus
2L 23513712 2L 18986672..18986910 255..17 1195 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:16:23 has no hits.

BS10177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:53 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:59 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:02 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1031 17..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:48:20 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1031 17..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:48:20 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18978348..18978769 256..676 99 <- Minus
2L 18986672..18986910 17..255 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:02 Download gff for BS10177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978348..18978769 256..676 99 <- Minus
arm_2L 18986672..18986910 17..255 100   Minus

BS10177.complete Sequence

686 bp (686 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636584

> BS10177.complete
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGTAGAAGCTTTCTAGACCAT

BS10177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 654 CG10641-PB 1..654 17..670 3270 100 Plus
Swip-1-RA 654 CG10641-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1025 17..671 3275 100 Plus
Swip-1-RA 1628 CG10641-RA 371..1025 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978354..18978769 671..256 2080 100 Minus
2L 23513712 2L 18986672..18986910 255..17 1195 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:33 has no hits.

BS10177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:38 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:15 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 367..1027 17..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:37 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1024 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:38 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 367..1027 17..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:24 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1024 17..670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:24 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18978355..18978769 256..670 100 <- Minus
2L 18986672..18986910 17..255 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:37 Download gff for BS10177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978355..18978769 256..670 100 <- Minus
arm_2L 18986672..18986910 17..255 100   Minus

BS10177.pep Sequence

Translation from 16 to 669

> BS10177.pep
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQ*

BS10177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-PB 217 CG10641-PB 1..217 1..217 1087 100 Plus
Swip-1-PA 217 CG10641-PA 1..217 1..217 1087 100 Plus
CG14861-PA 364 CG14861-PA 201..358 66..217 177 35.2 Plus