Clone Sequence Records
BS10177.3prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-19
> BS10177.3prime
ATGGTCTAGAAAGCTTCTACTGGAAGATCGCTGCCCGCTGCTGGAACTGC
TGACGCCGCTGGGCCCGCTCCTCCTCCTCTCGCCGGCGCTCCTCCTGCTC
CGCCCGAATCTCGTCGTGGAACTTGTTCGTCCGCAGCTGTTGCTCAATTT
TCGCCTCGAAGAAGTTCTTGGCTCCGCTCACTCCCACCTGCTCCACATCG
ACCTCCGTGAGGCGGGCCAGCTGATTCAGCCCAGAATCGGAGTCCAGTTC
CCCGGCCTGGGCCTTCCTGAAGATCAGCAAGAACTCTCGGAATGAAATCT
TGCCATCGTTATCCTCGTCCACCTCGGCAATCATCTGCTTGAGTCCCAGA
TGGGTTTGCGGAGCGCCCAGCTTCTCCATCATGAACTTCAGCTCCTGCAG
GTCCAAGAAGCCATCACGAGCCGTATCGTATGTATTGAAGGTCTTCTGGT
AGTCCTTGATCTGGTTACGGGAGAACTCGGGGAAGTCGGTGTAGACGTTG
ACCACTTTGTAGGTGCGACGCACCTCGATGCCCGCCTCCTGGGACTCCAT
GATCTCCTGGCGCCGATTGAGGATGTGCGTCAGCTCGGAGCTGTCCGTGT
TGGTGGTGCTGCTGGGGCTGTCCACGCTGTCCTTGTTGGAGGCGGATGAG
GCGTTCGAGGAAACGGACATGTCGACTGATAACT
BS10177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10641-PA | 654 | CG10641-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1025 | 670..16 | 3275 | 100 | Minus |
Swip-1-RA | 1628 | CG10641-RA | 371..1025 | 670..16 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978354..18978769 | 16..431 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 18986672..18986910 | 432..670 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:12:30 has no hits.
BS10177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:51 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:58 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:07 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1031 | 11..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:28 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1031 | 11..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:28 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18986672..18986910 | 432..670 | 100 | | Plus |
2L | 18978348..18978769 | 11..431 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:07 Download gff for
BS10177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978348..18978769 | 11..431 | 99 | <- | Plus |
arm_2L | 18986672..18986910 | 432..670 | 100 | | Plus |
BS10177.5prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-19
> BS10177.5prime
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGTAGAAGCTTTCTAGACC
BS10177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10641-PA | 654 | CG10641-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1025 | 17..671 | 3275 | 100 | Plus |
Swip-1-RA | 1628 | CG10641-RA | 371..1025 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978354..18978769 | 671..256 | 2080 | 100 | Minus |
2L | 23513712 | 2L | 18986672..18986910 | 255..17 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:16:23 has no hits.
BS10177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:53 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:49:59 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:02 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1031 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:48:20 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1031 | 17..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:48:20 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18978348..18978769 | 256..676 | 99 | <- | Minus |
2L | 18986672..18986910 | 17..255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:02 Download gff for
BS10177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978348..18978769 | 256..676 | 99 | <- | Minus |
arm_2L | 18986672..18986910 | 17..255 | 100 | | Minus |
BS10177.complete Sequence
686 bp (686 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636584
> BS10177.complete
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGTAGAAGCTTTCTAGACCAT
BS10177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 654 | CG10641-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
Swip-1-RA | 654 | CG10641-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1025 | 17..671 | 3275 | 100 | Plus |
Swip-1-RA | 1628 | CG10641-RA | 371..1025 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978354..18978769 | 671..256 | 2080 | 100 | Minus |
2L | 23513712 | 2L | 18986672..18986910 | 255..17 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:33 has no hits.
BS10177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:38 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:15 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 367..1027 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:37 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1024 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:38 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 367..1027 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:24 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1024 | 17..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:24 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18978355..18978769 | 256..670 | 100 | <- | Minus |
2L | 18986672..18986910 | 17..255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:37 Download gff for
BS10177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978355..18978769 | 256..670 | 100 | <- | Minus |
arm_2L | 18986672..18986910 | 17..255 | 100 | | Minus |
BS10177.pep Sequence
Translation from 16 to 669
> BS10177.pep
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQ*
BS10177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-PB | 217 | CG10641-PB | 1..217 | 1..217 | 1087 | 100 | Plus |
Swip-1-PA | 217 | CG10641-PA | 1..217 | 1..217 | 1087 | 100 | Plus |
CG14861-PA | 364 | CG14861-PA | 201..358 | 66..217 | 177 | 35.2 | Plus |