Clone Sequence Records
BS10178.3prime Sequence
871 bp (859 high quality bases) assembled on 2006-04-19
> BS10178.3prime
ATGGTCTAGAAAGCTTTTAGACCTTAAGACGTTTCAAGAATAAAGATTGT
GATTGCAACTCTAGCTCCGTCAGTTTGCGTACAGTTGGCACCAGCTGCTC
GACGTGGTCTTCGTAGCCGCTGCCAGTTCTTAAATTCTTTTGACCGTACA
CGACCTTGCCGTCGAAGTCATTAACTGGCACATCCATGGTCTTGTCCACC
TGCTGGATGGTGATGTTCAAGTGGTCCTCAACTTCGGCCAGTAGGTTTGG
TTCGTTGTACCAGATGCAGCATCCTCGGACTTCGGTTAAGTTTGTGTTGT
TGCAGCTACGGCCGCGCGACTTGCACCACTCGCCGTGGTACCAAACCTTC
TCCGGCACTGTTGCCACCAAACTAATGGCCAACCCCATGCGTTCCGCCCT
GCCCACACGTCCGATGCGATGAACGTAATTGGTCTTGTCATCGGGCAGCG
TCACATTTATCATAAACGGCAGCCCCGTAATGTCTAGACCACGAGCCGCC
ACGTCCGTGCAAATCAGAAACTTGACTTGTTGCCGCTTAAACATTTCCAG
GTTTTCTTTACGCTCCTGCGGCTTTCGGTCACCATGAAGGCAGACGCACG
AGTAATGTTTTCCGCCTCGCTGGCGGAGAAATCTTTCTAAGTTATCACAG
TCTTGCTTGGTGCGGCAGAAGATAATGGCTCGGTCCATATTGTGTTTATC
TATAGCGTGCACACAGTATTCGCCCTTGAGCAGCTTGACTGCCTGCGACA
ACGTCTCCTTCGAATGATTGCCTGGATGAACGTTGTCACGGTCGTGGACG
CCGTCGGTGCCAATGGGTTGGCGCAGCGACTGCCAGGTGGTGTCCATCTG
CGGGTCGACTAGACAGACGAC
BS10178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9054-PA | 2184 | Ddx1-RA | 1330..2184 | 871..17 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 1444..2298 | 871..17 | 4275 | 100 | Minus |
| CG11523-RA | 874 | CG11523-RA | 835..874 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22265400..22265845 | 462..17 | 2230 | 100 | Minus |
| 3L | 28110227 | 3L | 22264919..22265327 | 871..463 | 2045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:43:35 has no hits.
BS10178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:54 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-PA | 1330..2184 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:01 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9054-PA | 1330..2184 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:47 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 1444..2301 | 13..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:12 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 1444..2301 | 13..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:12 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22264919..22265327 | 463..871 | 100 | -> | Minus |
| 3L | 22265400..22265848 | 13..462 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:47 Download gff for
BS10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22258019..22258427 | 463..871 | 100 | -> | Minus |
| arm_3L | 22258500..22258948 | 13..462 | 99 | | Minus |
BS10178.5prime Sequence
901 bp (850 high quality bases) assembled on 2006-04-19
> BS10178.5prime
GAAGTTATCAGTCGACATGACTGCATTCGAAGAGTTTGGCGTGCTTCCGG
AGCTGGGAATGGCCACAGACGAATTGGACTGGACCCTGCCCACCGATGTC
CAGGCTGAGGCCATTCCTCTGATCCTGGGTGGCGGCGATGTGCTGATGGC
CGCCGAAACTGGTTCCGGAAAAACGGGTGCCTTCTGCCTCCCCATTCTGC
AAATCGTGTGGGAGACCTTGCGTGATCTGGAGGAGGGGAAGGCTGGCAAG
GGCGGTGCAATTGGAGGAGCTGTGACTCCGTGGACCATGTCCTTCTTCGA
CCGAGGAAACGCGCTTGCCGTCACTCCTGATGGTCTGCGTTGCCAGTCGC
GGGAGTTCAAGGAGTGGCACGGGTGTCGGGCCACCACTGGCGTTCGCGGA
AAGGGCAAGTTCTACTTTGAGGCCACGGTAACGGACGAGGGACTGTGTCG
TGTGGGCTGGTCTACACAGCAGGCAAACCTCGATTTGGGCACCTGTCGCA
TGGGCTTTGGATTCGGCGGCACCGGCAAGAAGTCCAACAACCGCCAGTTT
GATGACTACGGTGAGGCATTCGGCAAGGCAGATGTCATCGGCTGCCTGCT
CGATTTGAAAAACCAGGAAGTGAGCTTCACCAAGAATGGCCAGAACCTGG
GCGTAGCCTTCCGCCTGCCGGACAACCTTGCCAAGGAGACCTTTTACCCG
GCGGTGGTGCTGAAGAACGCCGAAATGCAGTTTAACTTTGGAAAGACTGA
CTTCAAGTATGCCCCGGGTAACGGGTTCGTTGGCGCTTGCCAGGCTGGAC
CCGAGCATAGCAAGGCCAATCCGATAACCGGTCCCGCAGCTGGAGCACCG
TCCGCCAACCGGCGCCTAACGCCCCTCAGGCCATTATCATGGAGCCCAGC
A
BS10178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9054-PA | 2184 | Ddx1-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
| CG9054-PA | 2184 | Ddx1-RA | 842..886 | 857..901 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 115..1000 | 17..901 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22263658..22264475 | 85..901 | 4025 | 99.8 | Plus |
| 3L | 28110227 | 3L | 22263547..22263604 | 27..84 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:11 has no hits.
BS10178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:31:55 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:02 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9054-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:49:59 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..999 | 8..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:46 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..999 | 8..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:46 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22263553..22263604 | 33..84 | 100 | -> | Plus |
| 3L | 22263658..22264474 | 85..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:49:59 Download gff for
BS10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22256653..22256704 | 33..84 | 100 | -> | Plus |
| arm_3L | 22256758..22257574 | 85..900 | 99 | | Plus |
BS10178.complete Sequence
2216 bp assembled on 2010-05-10
GenBank Submission: KX804843
> BS10178.complete
GAAGTTATCAGTCGACATGACTGCATTCGAAGAGTTTGGCGTGCTTCCGG
AGCTGGGAATGGCCACAGACGAATTGGACTGGACCCTGCCCACCGATGTC
CAGGCTGAGGCCATTCCTCTGATCCTGGGTGGCGGCGATGTGCTGATGGC
CGCCGAAACTGGTTCCGGAAAAACGGGTGCCTTCTGCCTCCCCATTCTGC
AAATCGTGTGGGAGACCTTGCGTGATCTGGAGGAGGGGAAGGCTGGCAAG
GGCGGTGCAATTGGAGGAGCTGTGACTCCGTGGACCATGTCCTTCTTCGA
CCGAGGAAACGCGCTTGCCGTCACTCCTGATGGTCTGCGTTGCCAGTCGC
GGGAGTTCAAGGAGTGGCACGGGTGTCGGGCCACCACTGGCGTTCGCGGA
AAGGGCAAGTTCTACTTTGAGGCCACGGTAACGGACGAGGGACTGTGTCG
TGTGGGCTGGTCTACACAGCAGGCAAACCTCGATTTGGGCACCTGTCGCA
TGGGCTTTGGATTCGGCGGCACCGGCAAGAAGTCCAACAACCGCCAGTTT
GATGACTACGGTGAGGCATTCGGCAAGGCAGATGTCATCGGCTGCCTGCT
CGATTTGAAAAACCAGGAAGTGAGCTTCACCAAGAATGGCCAGAACCTGG
GCGTAGCCTTCCGCCTGCCGGACAACCTTGCCAAGGAGACCTTTTACCCG
GCGGTGGTGCTGAAGAACGCCGAAATGCAGTTTAACTTTGGAAAGACTGA
CTTCAAGTATGCCCCGGGTAACGGGTTCGTTGGCGCTTGCCAGGCTGGAC
CCGAGCATAGCAAGGCCAATCCGATAACCGGTCCCGCAGCTGGAGCACCG
TCCGCCAAACCGGCGCCTAACGCCCCTCAGGCCATTATCATGGAGCCCAG
CAGAGAATTGGCCGAGCAAACCTACAACCAGATCGAGAAGTTTAAATACC
ACCTGAGCAACCCAGAGGTTCGCTCCCTGCTGCTTATCGGTGGAGTGAGG
TTGGAAGAGCAAAAGGCGCAGCTGATGCAGGGCACTCACATAGTGGTGGG
CACGCCCGGGCGGCTGGAGGAGATGATCAACAGTGGACTGGTCCTGCTCA
CCCATTGCCGCTTTTTTGTTCTGGATGAGGCTGACGCACTTCTGAAGCAG
GGTTACACCGAGCTGATTGACCGTCTACACAAACAAATTCCCAAGATCAC
ATCGGATGGTCGCCGTCTGCAGATGGTCGTCTGCTCGGCCACGTTGCATG
CATTTGAGGTGAAGAAAATGGCTGAGCGCCTGATGCACTTCCCCACCTGG
GTGGATCTGAAGGGGGAGGATGCTGTCCCTGAGACGGTTCACCACGTCGT
CTGTCTAGTCGACCCGCAGATGGACACCACCTGGCAGTCGCTGCGCCAAC
CCATTGGCACCGACGGCGTCCACGACCGTGACAACGTTCATCCAGGCAAT
CATTCGAAGGAGACGTTGTCGCAGGCAGTCAAGCTGCTCAAGGGCGAATA
CTGTGTGCACGCTATAGATAAACACAATATGGACCGAGCCATTATCTTCT
GCCGCACCAAGCAAGACTGTGATAACTTAGAAAGATTTCTCCGCCAGCGA
GGCGGAAAACATTACTCGTGCGTCTGCCTTCATGGTGACCGAAAGCCGCA
GGAGCGTAAAGAAAACCTGGAAATGTTTAAGCGGCAACAAGTCAAGTTTC
TGATTTGCACGGACGTGGCGGCTCGTGGTCTAGACATTACGGGGCTGCCG
TTTATGATAAATGTGACGCTGCCCGATGACAAGACCAATTACGTTCATCG
CATCGGACGTGTGGGCAGGGCGGAACGCATGGGGTTGGCCATTAGTTTGG
TGGCAACAGTGCCGGAGAAGGTTTGGTACCACGGCGAGTGGTGCAAGTCG
CGCGGCCGTAGCTGCAACAACACAAACTTAACCGAAGTCCGAGGATGCTG
CATCTGGTACAACGAACCAAACCTACTGGCCGAAGTTGAGGACCACTTGA
ACATCACCATCCAGCAGGTGGACAAGACCATGGATGTGCCAGTTAATGAC
TTCGACGGCAAGGTCGTGTACGGTCAAAAGAATTTAAGAACTGGCAGCGG
CTACGAAGACCACGTCGAGCAGCTGGTGCCAACTGTACGCAAACTGACGG
AGCTAGAGTTGCAATCACAATCTTTATTCTTGAAACGTCTTAAGGTCTAA
AAGCTTTCTAGACCAT
BS10178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2184 | CG9054-PA | 1..2184 | 17..2200 | 10890 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 115..2298 | 17..2200 | 10890 | 99.9 | Plus |
| CG11523-RA | 874 | CG11523-RA | 835..874 | 2200..2161 | 200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22263658..22265327 | 85..1754 | 8320 | 99.9 | Plus |
| 3L | 28110227 | 3L | 22265400..22265845 | 1755..2200 | 2230 | 100 | Plus |
| 3L | 28110227 | 3L | 22263547..22263604 | 27..84 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:54:34 has no hits.
BS10178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:18 Download gff for
BS10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 115..2296 | 17..2198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:41 Download gff for
BS10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 115..2296 | 17..2198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:14 Download gff for
BS10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 115..2296 | 17..2198 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:14 Download gff for
BS10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22263483..22263498 | 17..32 | 100 | -> | Plus |
| 3L | 22263553..22263604 | 33..84 | 100 | -> | Plus |
| 3L | 22263658..22265327 | 85..1754 | 99 | -> | Plus |
| 3L | 22265400..22265843 | 1755..2198 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:41 Download gff for
BS10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22256583..22256598 | 17..32 | 100 | -> | Plus |
| arm_3L | 22256653..22256704 | 33..84 | 100 | -> | Plus |
| arm_3L | 22256758..22258427 | 85..1754 | 99 | -> | Plus |
| arm_3L | 22258500..22258943 | 1755..2198 | 100 | | Plus |
BS10178.pep Sequence
Translation from 16 to 2199
> BS10178.pep
MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGS
GKTGAFCLPILQIVWETLRDLEEGKAGKGGAIGGAVTPWTMSFFDRGNAL
AVTPDGLRCQSREFKEWHGCRATTGVRGKGKFYFEATVTDEGLCRVGWST
QQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQ
EVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQFNFGKTDFKYAP
GNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELAE
QTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRL
EEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRR
LQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDP
QMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAI
DKHNMDRAIIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQERKEN
LEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG
RAERMGLAISLVATVPEKVWYHGEWCKSRGRSCNNTNLTEVRGCCIWYNE
PNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHV
EQLVPTVRKLTELELQSQSLFLKRLKV*
BS10178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-PA | 727 | CG9054-PA | 1..727 | 1..727 | 3876 | 100 | Plus |
| Rm62-PH | 575 | CG10279-PH | 209..488 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PD | 575 | CG10279-PD | 209..488 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PI | 578 | CG10279-PI | 212..491 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PF | 578 | CG10279-PF | 212..491 | 285..610 | 332 | 29.4 | Plus |
