Clone BS10184 Report

Search the DGRC for BS10184

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptpar-6-RA
Protein status:BS10184.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10184.3prime Sequence

941 bp (740 high quality bases) assembled on 2006-04-19

> BS10184.3prime
ATGGTCTAGAAAGCTTCTACAAATGCAGCACTCCATCCTTGACATCGCTG
GCCATTATCGTGGACGCATTGGAGGCTGCCTGCTGGTGGTGCGACGAGGG
TGATGAGGATAATGGCGGCTGATGGTTGTGATTGCCGGCTGACGTGGACG
TTGGACTCTCGTCGAGGGTGACGCCCGTTAAGTCCACAATATCGTCCTGA
TCGTCGTGCTCGATCTCGTCGGAGGTGTTTGTATTATTAGTGTGATGTGA
CCCACTGGACAGCTGGCTGTTCCTTGAAAAGGATCCGCGATGTGTGGACG
TCAGTGTGCGCTGATTGGCCGGCTTCACGGTGATTATCAGATTGGAGCTG
TTGGCCACCATCATGTCGGTGACTTGATCCAGAGTCTTGCCAGCCACTTC
GATGCCATTTACCTCGATCACCTCATCGTTGACGGCCAGCAGGCCAGTAC
TTTCGGCCAGACCGCCCGGAACCAAACGGGATATAAAAATGCCCGGCTGC
TTCTCTAGCCCACTGGCCGTCACCCTGACAGAGGTGCCATCCCGTATGTA
GAATCCCAGGGGCTTATCGCTGCCGTGCTTCAGTAGCCGCACTCTTCTAT
GCGTTTCCGGCACTATATCCACATCTATAATGGCCGAGACTTGACGGAAA
TCGTGCGGTATGGATATCGATGGCGCCTTTGTCTTCACTGGCGTATGGCC
CATCAGTATGCTGCCGATGAGGTTTCTCGGTTTCATCGTTCCAAAGCCAG
AGTACTCATTAAGATCATCCTTTCGCTGCACAATGACCCGTAAAAGTGGA
CGTGCTGTTTTCAGGGCCCGGCCGAAGTTATCGTCGTTGTTAATCGGCAA
CAGATCATTGTCCCGCGGATCGATGTAGAGTATGAGAAACTGGATGTTGG
TCAGCTTGTGCAGCTGCTCCATGAGGGATGCGAATTTGTCG

BS10184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5884-PA 1056 par-6-RA 132..1056 941..17 4600 99.8 Minus
CG5884-PB 1056 par-6-RB 132..1056 941..17 4600 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 431..1355 941..17 4610 99.9 Minus
par-6-RA 3032 CG5884-RA 431..1355 941..17 4610 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705419 769..17 3765 100 Minus
X 23542271 X 17704428..17704604 941..765 855 98.9 Minus
Blast to na_te.dros performed on 2015-02-01 10:31:51 has no hits.

BS10184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:06 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-PB 132..1056 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:19 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5884-PB 132..1056 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:28:36 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 431..1359 11..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:05:04 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 431..1359 11..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:05:04 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17704428..17704600 769..941 99 -> Minus
X 17704668..17705423 11..768 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:28:36 Download gff for BS10184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17598461..17598633 769..941 99 -> Minus
arm_X 17598701..17599456 11..768 99   Minus

BS10184.5prime Sequence

894 bp (808 high quality bases) assembled on 2006-04-19

> BS10184.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCCAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGA

BS10184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5884-PA 1056 par-6-RA 1..878 17..894 4365 99.8 Plus
CG5884-PB 1056 par-6-RB 1..878 17..894 4365 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 300..1177 17..894 4375 99.9 Plus
par-6-RA 3032 CG5884-RA 300..1177 17..894 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705241 320..894 2860 99.8 Plus
X 23542271 X 17704370..17704604 90..324 1160 99.6 Plus
X 23542271 X 17703651..17703725 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:33:39 has no hits.

BS10184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:07 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-PB 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:20 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5884-PB 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:49 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 295..1176 10..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:03 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 295..1176 10..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:03 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17703646..17703725 10..91 95 -> Plus
X 17704372..17704600 92..320 100 -> Plus
X 17704668..17705240 321..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:49 Download gff for BS10184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17597679..17597758 10..91 95 -> Plus
arm_X 17598405..17598633 92..320 100 -> Plus
arm_X 17598701..17599273 321..893 99   Plus

BS10184.complete Sequence

1088 bp (1088 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636586

> BS10184.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAG
CCGGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCAC
CACCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAA
GGATGGAGTGCTGCATTTGTAGAAGCTTTCTAGACCAT

BS10184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 1056 CG5884-PB 1..1056 17..1072 5280 100 Plus
par-6-RA 1056 CG5884-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 300..1355 17..1072 5280 100 Plus
par-6-RA 3032 CG5884-RA 300..1355 17..1072 5280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705419 320..1072 3765 100 Plus
X 23542271 X 17704370..17704604 90..324 1160 99.6 Plus
X 23542271 X 17703651..17703725 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:47:53 has no hits.

BS10184.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:34 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:07 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 318..1382 10..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:07 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 300..1355 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:34 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 318..1382 10..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:50 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 300..1355 17..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:50 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
X 17703651..17703725 17..91 100 -> Plus
X 17704372..17704600 92..320 100 -> Plus
X 17704668..17705419 321..1072 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:07 Download gff for BS10184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17597684..17597758 17..91 100 -> Plus
arm_X 17598405..17598633 92..320 100 -> Plus
arm_X 17598701..17599452 321..1072 100   Plus

BS10184.pep Sequence

Translation from 16 to 1071

> BS10184.pep
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
L*

BS10184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-PB 351 CG5884-PB 1..351 1..351 1786 100 Plus
par-6-PA 351 CG5884-PA 1..351 1..351 1786 100 Plus
metro-PD 546 CG30021-PD 4..224 11..255 154 25.8 Plus
metro-PC 585 CG30021-PC 4..224 11..255 154 25.8 Plus