Clone Sequence Records
BS10184.3prime Sequence
941 bp (740 high quality bases) assembled on 2006-04-19
> BS10184.3prime
ATGGTCTAGAAAGCTTCTACAAATGCAGCACTCCATCCTTGACATCGCTG
GCCATTATCGTGGACGCATTGGAGGCTGCCTGCTGGTGGTGCGACGAGGG
TGATGAGGATAATGGCGGCTGATGGTTGTGATTGCCGGCTGACGTGGACG
TTGGACTCTCGTCGAGGGTGACGCCCGTTAAGTCCACAATATCGTCCTGA
TCGTCGTGCTCGATCTCGTCGGAGGTGTTTGTATTATTAGTGTGATGTGA
CCCACTGGACAGCTGGCTGTTCCTTGAAAAGGATCCGCGATGTGTGGACG
TCAGTGTGCGCTGATTGGCCGGCTTCACGGTGATTATCAGATTGGAGCTG
TTGGCCACCATCATGTCGGTGACTTGATCCAGAGTCTTGCCAGCCACTTC
GATGCCATTTACCTCGATCACCTCATCGTTGACGGCCAGCAGGCCAGTAC
TTTCGGCCAGACCGCCCGGAACCAAACGGGATATAAAAATGCCCGGCTGC
TTCTCTAGCCCACTGGCCGTCACCCTGACAGAGGTGCCATCCCGTATGTA
GAATCCCAGGGGCTTATCGCTGCCGTGCTTCAGTAGCCGCACTCTTCTAT
GCGTTTCCGGCACTATATCCACATCTATAATGGCCGAGACTTGACGGAAA
TCGTGCGGTATGGATATCGATGGCGCCTTTGTCTTCACTGGCGTATGGCC
CATCAGTATGCTGCCGATGAGGTTTCTCGGTTTCATCGTTCCAAAGCCAG
AGTACTCATTAAGATCATCCTTTCGCTGCACAATGACCCGTAAAAGTGGA
CGTGCTGTTTTCAGGGCCCGGCCGAAGTTATCGTCGTTGTTAATCGGCAA
CAGATCATTGTCCCGCGGATCGATGTAGAGTATGAGAAACTGGATGTTGG
TCAGCTTGTGCAGCTGCTCCATGAGGGATGCGAATTTGTCG
BS10184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5884-PA | 1056 | par-6-RA | 132..1056 | 941..17 | 4600 | 99.8 | Minus |
CG5884-PB | 1056 | par-6-RB | 132..1056 | 941..17 | 4600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 431..1355 | 941..17 | 4610 | 99.9 | Minus |
par-6-RA | 3032 | CG5884-RA | 431..1355 | 941..17 | 4610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705419 | 769..17 | 3765 | 100 | Minus |
X | 23542271 | X | 17704428..17704604 | 941..765 | 855 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:31:51 has no hits.
BS10184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:06 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-PB | 132..1056 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:19 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5884-PB | 132..1056 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:28:36 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 431..1359 | 11..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:05:04 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 431..1359 | 11..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:05:04 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17704428..17704600 | 769..941 | 99 | -> | Minus |
X | 17704668..17705423 | 11..768 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:28:36 Download gff for
BS10184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17598461..17598633 | 769..941 | 99 | -> | Minus |
arm_X | 17598701..17599456 | 11..768 | 99 | | Minus |
BS10184.5prime Sequence
894 bp (808 high quality bases) assembled on 2006-04-19
> BS10184.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCCAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGA
BS10184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5884-PA | 1056 | par-6-RA | 1..878 | 17..894 | 4365 | 99.8 | Plus |
CG5884-PB | 1056 | par-6-RB | 1..878 | 17..894 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 300..1177 | 17..894 | 4375 | 99.9 | Plus |
par-6-RA | 3032 | CG5884-RA | 300..1177 | 17..894 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705241 | 320..894 | 2860 | 99.8 | Plus |
X | 23542271 | X | 17704370..17704604 | 90..324 | 1160 | 99.6 | Plus |
X | 23542271 | X | 17703651..17703725 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:33:39 has no hits.
BS10184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:07 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-PB | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:20 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5884-PB | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:49 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 295..1176 | 10..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:03 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 295..1176 | 10..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:03 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17703646..17703725 | 10..91 | 95 | -> | Plus |
X | 17704372..17704600 | 92..320 | 100 | -> | Plus |
X | 17704668..17705240 | 321..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:49 Download gff for
BS10184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17597679..17597758 | 10..91 | 95 | -> | Plus |
arm_X | 17598405..17598633 | 92..320 | 100 | -> | Plus |
arm_X | 17598701..17599273 | 321..893 | 99 | | Plus |
BS10184.complete Sequence
1088 bp (1088 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636586
> BS10184.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAG
CCGGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCAC
CACCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAA
GGATGGAGTGCTGCATTTGTAGAAGCTTTCTAGACCAT
BS10184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 1056 | CG5884-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
par-6-RA | 1056 | CG5884-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 300..1355 | 17..1072 | 5280 | 100 | Plus |
par-6-RA | 3032 | CG5884-RA | 300..1355 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705419 | 320..1072 | 3765 | 100 | Plus |
X | 23542271 | X | 17704370..17704604 | 90..324 | 1160 | 99.6 | Plus |
X | 23542271 | X | 17703651..17703725 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:47:53 has no hits.
BS10184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:34 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:07 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 318..1382 | 10..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:07 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 300..1355 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:34 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 318..1382 | 10..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:50 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 300..1355 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:50 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17703651..17703725 | 17..91 | 100 | -> | Plus |
X | 17704372..17704600 | 92..320 | 100 | -> | Plus |
X | 17704668..17705419 | 321..1072 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:07 Download gff for
BS10184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17597684..17597758 | 17..91 | 100 | -> | Plus |
arm_X | 17598405..17598633 | 92..320 | 100 | -> | Plus |
arm_X | 17598701..17599452 | 321..1072 | 100 | | Plus |
BS10184.pep Sequence
Translation from 16 to 1071
> BS10184.pep
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
L*
BS10184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-PB | 351 | CG5884-PB | 1..351 | 1..351 | 1786 | 100 | Plus |
par-6-PA | 351 | CG5884-PA | 1..351 | 1..351 | 1786 | 100 | Plus |
metro-PD | 546 | CG30021-PD | 4..224 | 11..255 | 154 | 25.8 | Plus |
metro-PC | 585 | CG30021-PC | 4..224 | 11..255 | 154 | 25.8 | Plus |