Clone Sequence Records
BS10188.3prime Sequence
909 bp (821 high quality bases) assembled on 2006-04-19
> BS10188.3prime
ATGGTCTAGAAAGCTTCTAGGGCGAGTTGGAGATGTCCATGTTGTCCGAC
TTCTCGACACTAACCGATTTGCGTGACTTCGAATCGGCGCTGGATCGTGA
GCTCTTAACCTCAGTGTCCTCAGAGATGGATTTGAGTTTGCGAGTTTCGG
GAGTACGGGAGCGGTCGCGCCGCCGGGATGACTTGGCGGAAACGATGACC
GGATCCTTGCTGCGACTGGACCGTGACTTACTGCCGGTAGCTGGCGGCGG
CGAGGGAGAGCTGCGCTTGCTTCTAGATCGGGGAGAACGTGAAGAGTGCT
TCTCGCTGCGGTGTGACTTCTTGCTGCGCTCGCGGGATCGGGAACGTTTG
CCGTTGCCACTGCCTCCTCCACCGGTGCCATGGGAACGCGAGCTACGTGA
GCGTGAGGTGCTGCGGCGATGGCGGGACCTGGAGCGCTTGCCACGCGACC
TTGAGGAGCGAGAGTGCTTGCCGCCACGGGAGCGTGATCTCCTGGAACGT
GAGGAGCTGCGACGGTGTCGTGATCTTGAGCGCTTGCTGCGAGAACGGGA
CGAGTGCTTGCCACGCGACCTAGAGCGGCGTGATCGGGACACACTACGTC
GCTCTCTGGAACCGGAACGCCTGGAACGGCGTCTCGATGTGGAACGATGC
GAGCGGGATCGACTGGTGCGACGGTCCCGGGAACGGGACCGTGATCTCGA
CCTGCGGCGCTTGTCCTTAGCGAGCATTCCAATTACCGGATCAATGGCCG
CTGAGATCATACTCTGCGCCTCTTTCACAATGGTCATGGCCTCCTCAATC
TCAGCCTGCGCTGCCTCATTCGACTTTGCCTCCGGCTTGGTTATGGAATA
CGTGGAGTGGTAGACGCTTAGATGGCCACCCTTGAACTCCCTGGCCTGCA
TGCGCAGGG
BS10188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4602-PA | 1542 | Srp54-RA | 669..1542 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp54-RA | 2134 | CG4602-RA | 787..1680 | 909..16 | 4425 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9913697..9914590 | 909..16 | 4425 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:24:16 has no hits.
BS10188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:15 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-PA | 650..1542 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:31 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4602-PA | 650..1542 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:28 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 787..1683 | 12..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:04 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 787..1683 | 12..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:04 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9913697..9914593 | 12..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:28 Download gff for
BS10188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9913697..9914593 | 12..909 | 99 | | Minus |
BS10188.5prime Sequence
901 bp (798 high quality bases) assembled on 2006-04-19
> BS10188.5prime
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCAAGCTACCGCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCCG
CAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAATTCAATCTGCC
GGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAGA
TTCGGCGCACCATTATCGTGTGCGATGTTAAGAACGAGTGGCGGCTAGAC
GATCTGATGGAATGCTTTCAGCGCGCTGGGGAGGTGAAGTATGCCCGTTG
GGCCGAGAAGGATAACAAGACGTACTGCATGATTGAGTTCTGCGAACAGA
CCAGCATTATTCACGCCCTGCGCATGCAGGGCCAGGAGTTCAAGGGTGGC
CATCTAAGCGTCTACCACTCCACGTATTCCATAACCAAGCCGGAGGCAAA
GTCGAATGAGGCAGCGCAGGCTGAGATTGAGGAGGCCATGACCATTGTGA
AAGAGGCGCAGAGTATGATCTCAGCGGCCATTGATCGGGTAATTGGAATG
CTCGCTAAGGACAAGCGCCGCAGGTCGAGATCACGGTCCCGTTCCCGGAA
C
BS10188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4602-PA | 1542 | Srp54-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp54-RA | 2134 | CG4602-RA | 136..1019 | 15..898 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9913046..9913929 | 15..898 | 4405 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:16:18 has no hits.
BS10188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:16 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:32 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4602-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:59 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 136..1022 | 15..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:20 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 136..1022 | 15..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:20 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9913046..9913932 | 15..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:59 Download gff for
BS10188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9913046..9913932 | 15..901 | 99 | | Plus |
BS10188.complete Sequence
1574 bp (1574 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636587
> BS10188.complete
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCAAGCTACCGCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCCG
CAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAATTCAATCTGCC
GGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAGA
TTCGGCGCACCATTATCGTGTGCGATGTTAAGAACGAGTGGCGGCTAGAC
GATCTGATGGAATGCTTTCAGCGCGCTGGGGAGGTGAAGTATGCCCGTTG
GGCCGAGAAGGATAACAAGACGTACTGCATGATTGAGTTCTGCGAACAGA
CCAGCATTATTCACGCCCTGCGCATGCAGGGCCAGGAGTTCAAGGGTGGC
CATCTAAGCGTCTACCACTCCACGTATTCCATAACCAAGCCGGAGGCAAA
GTCGAATGAGGCAGCGCAGGCTGAGATTGAGGAGGCCATGACCATTGTGA
AAGAGGCGCAGAGTATGATCTCAGCGGCCATTGATCCGGTAATTGGAATG
CTCGCTAAGGACAAGCGCCGCAGGTCGAGATCACGGTCCCGTTCCCGGGA
CCGTCGCACCAGTCGATCCCGCTCGCATCGTTCCACATCGAGACGCCGTT
CCAGGCGTTCCGGTTCCAGAGAGCGACGTAGTGTGTCCCGATCACGCCGC
TCTAGGTCGCGTGGCAAGCACTCGTCCCGTTCTCGCAGCAAGCGCTCAAG
ATCACGACACCGTCGCAGCTCCTCACGTTCCAGGAGATCACGCTCCCGTG
GCGGCAAGCACTCTCGCTCCTCAAGGTCGCGTGGCAAGCGCTCCAGGTCC
CGCCATCGCCGCAGCACCTCACGCTCACGTAGCTCGCGTTCCCATGGCAC
CGGTGGAGGAGGCAGTGGCAACGGCAAACGTTCCCGATCCCGCGAGCGCA
GCAAGAAGTCACACCGCAGCGAGAAGCACTCTTCACGTTCTCCCCGATCT
AGAAGCAAGCGCAGCTCTCCCTCGCCGCCGCCAGCTACCGGCAGTAAGTC
ACGGTCCAGTCGCAGCAAGGATCCGGTCATCGTTTCCGCCAAGTCATCCC
GGCGGCGCGACCGCTCCCGTACTCCCGAAACTCGCAAACTCAAATCCATC
TCTGAGGACACTGAGGTTAAGAGCTCACGATCCAGCGCCGATTCGAAGTC
ACGCAAATCGGTTAGTGTCGAGAAGTCGGACAACATGGACATCTCCAACT
CGCCCTAGAAGCTTTCTAGACCAT
BS10188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp54-RA | 1542 | CG4602-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp54-RA | 2134 | CG4602-RA | 136..1680 | 15..1559 | 7725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9913046..9914590 | 15..1559 | 7725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:44:47 has no hits.
BS10188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:36 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:10 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 140..1687 | 15..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:55 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 138..1679 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:37 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 140..1687 | 15..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:04 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp54-RA | 138..1679 | 17..1558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:04 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9913048..9914589 | 17..1558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:55 Download gff for
BS10188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9913048..9914589 | 17..1558 | 100 | | Plus |
BS10188.pep Sequence
Translation from 16 to 1557
> BS10188.pep
MAGGNTPRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPV
QSRICYVKYTDTTSVPVAQHLTNTVFIDRALIVIPVLAIPEEYRALEMLK
NGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDPKLVEFNLPEYPAL
PSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDN
KTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPEAKSNEAA
QAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSR
SRSHRSTSRRRSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKRSRSRHRR
SSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS
GNGKRSRSRERSKKSHRSEKHSSRSPRSRSKRSSPSPPPATGSKSRSSRS
KDPVIVSAKSSRRRDRSRTPETRKLKSISEDTEVKSSRSSADSKSRKSVS
VEKSDNMDISNSP*
BS10188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp54-PA | 513 | CG4602-PA | 1..513 | 1..513 | 2586 | 100 | Plus |
CG9915-PC | 820 | CG9915-PC | 240..522 | 285..513 | 291 | 41 | Plus |
CG9915-PB | 820 | CG9915-PB | 240..522 | 285..513 | 291 | 41 | Plus |
CG9915-PC | 820 | CG9915-PC | 219..440 | 285..500 | 284 | 48.1 | Plus |
CG9915-PB | 820 | CG9915-PB | 219..440 | 285..500 | 284 | 48.1 | Plus |
CG9915-PC | 820 | CG9915-PC | 160..388 | 285..500 | 283 | 44.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 160..388 | 285..500 | 283 | 44.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 16..316 | 236..495 | 282 | 38.5 | Plus |
CG9915-PB | 820 | CG9915-PB | 16..316 | 236..495 | 282 | 38.5 | Plus |
CG9915-PC | 820 | CG9915-PC | 175..404 | 288..500 | 278 | 43.7 | Plus |
CG9915-PB | 820 | CG9915-PB | 175..404 | 288..500 | 278 | 43.7 | Plus |
CG9915-PC | 820 | CG9915-PC | 191..416 | 285..500 | 273 | 44.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 191..416 | 285..500 | 273 | 44.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 112..365 | 285..512 | 270 | 40.4 | Plus |
CG9915-PB | 820 | CG9915-PB | 112..365 | 285..512 | 270 | 40.4 | Plus |
CG6695-PB | 715 | CG6695-PB | 360..554 | 236..441 | 247 | 43.8 | Plus |
CG6695-PA | 961 | CG6695-PA | 360..554 | 236..441 | 247 | 43.8 | Plus |
CG9915-PC | 820 | CG9915-PC | 319..525 | 283..493 | 244 | 42.2 | Plus |
CG9915-PB | 820 | CG9915-PB | 319..525 | 283..493 | 244 | 42.2 | Plus |
CG9915-PC | 820 | CG9915-PC | 349..558 | 285..483 | 209 | 36.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 349..558 | 285..483 | 209 | 36.3 | Plus |
CG6695-PB | 715 | CG6695-PB | 410..540 | 336..474 | 201 | 44.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 56..258 | 305..512 | 181 | 31.9 | Plus |
CG9915-PB | 820 | CG9915-PB | 56..258 | 305..512 | 181 | 31.9 | Plus |