Clone BS10188 Report

Search the DGRC for BS10188

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptSrp54-RA
Protein status:BS10188.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10188.3prime Sequence

909 bp (821 high quality bases) assembled on 2006-04-19

> BS10188.3prime
ATGGTCTAGAAAGCTTCTAGGGCGAGTTGGAGATGTCCATGTTGTCCGAC
TTCTCGACACTAACCGATTTGCGTGACTTCGAATCGGCGCTGGATCGTGA
GCTCTTAACCTCAGTGTCCTCAGAGATGGATTTGAGTTTGCGAGTTTCGG
GAGTACGGGAGCGGTCGCGCCGCCGGGATGACTTGGCGGAAACGATGACC
GGATCCTTGCTGCGACTGGACCGTGACTTACTGCCGGTAGCTGGCGGCGG
CGAGGGAGAGCTGCGCTTGCTTCTAGATCGGGGAGAACGTGAAGAGTGCT
TCTCGCTGCGGTGTGACTTCTTGCTGCGCTCGCGGGATCGGGAACGTTTG
CCGTTGCCACTGCCTCCTCCACCGGTGCCATGGGAACGCGAGCTACGTGA
GCGTGAGGTGCTGCGGCGATGGCGGGACCTGGAGCGCTTGCCACGCGACC
TTGAGGAGCGAGAGTGCTTGCCGCCACGGGAGCGTGATCTCCTGGAACGT
GAGGAGCTGCGACGGTGTCGTGATCTTGAGCGCTTGCTGCGAGAACGGGA
CGAGTGCTTGCCACGCGACCTAGAGCGGCGTGATCGGGACACACTACGTC
GCTCTCTGGAACCGGAACGCCTGGAACGGCGTCTCGATGTGGAACGATGC
GAGCGGGATCGACTGGTGCGACGGTCCCGGGAACGGGACCGTGATCTCGA
CCTGCGGCGCTTGTCCTTAGCGAGCATTCCAATTACCGGATCAATGGCCG
CTGAGATCATACTCTGCGCCTCTTTCACAATGGTCATGGCCTCCTCAATC
TCAGCCTGCGCTGCCTCATTCGACTTTGCCTCCGGCTTGGTTATGGAATA
CGTGGAGTGGTAGACGCTTAGATGGCCACCCTTGAACTCCCTGGCCTGCA
TGCGCAGGG

BS10188.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4602-PA 1542 Srp54-RA 669..1542 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 2134 CG4602-RA 787..1680 909..16 4425 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9913697..9914590 909..16 4425 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 13:24:16 has no hits.

BS10188.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:15 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-PA 650..1542 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:31 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4602-PA 650..1542 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:28 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 787..1683 12..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:04 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 787..1683 12..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:04 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9913697..9914593 12..909 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:28 Download gff for BS10188.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9913697..9914593 12..909 99   Minus

BS10188.5prime Sequence

901 bp (798 high quality bases) assembled on 2006-04-19

> BS10188.5prime
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCAAGCTACCGCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCCG
CAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAATTCAATCTGCC
GGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAGA
TTCGGCGCACCATTATCGTGTGCGATGTTAAGAACGAGTGGCGGCTAGAC
GATCTGATGGAATGCTTTCAGCGCGCTGGGGAGGTGAAGTATGCCCGTTG
GGCCGAGAAGGATAACAAGACGTACTGCATGATTGAGTTCTGCGAACAGA
CCAGCATTATTCACGCCCTGCGCATGCAGGGCCAGGAGTTCAAGGGTGGC
CATCTAAGCGTCTACCACTCCACGTATTCCATAACCAAGCCGGAGGCAAA
GTCGAATGAGGCAGCGCAGGCTGAGATTGAGGAGGCCATGACCATTGTGA
AAGAGGCGCAGAGTATGATCTCAGCGGCCATTGATCGGGTAATTGGAATG
CTCGCTAAGGACAAGCGCCGCAGGTCGAGATCACGGTCCCGTTCCCGGAA
C

BS10188.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4602-PA 1542 Srp54-RA 1..882 17..898 4385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 2134 CG4602-RA 136..1019 15..898 4405 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9913046..9913929 15..898 4405 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 20:16:18 has no hits.

BS10188.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:16 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:32 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4602-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:59 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 136..1022 15..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:20 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 136..1022 15..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:20 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9913046..9913932 15..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:59 Download gff for BS10188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9913046..9913932 15..901 99   Plus

BS10188.complete Sequence

1574 bp (1574 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636587

> BS10188.complete
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCAAGCTACCGCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCCG
CAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAATTCAATCTGCC
GGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAGA
TTCGGCGCACCATTATCGTGTGCGATGTTAAGAACGAGTGGCGGCTAGAC
GATCTGATGGAATGCTTTCAGCGCGCTGGGGAGGTGAAGTATGCCCGTTG
GGCCGAGAAGGATAACAAGACGTACTGCATGATTGAGTTCTGCGAACAGA
CCAGCATTATTCACGCCCTGCGCATGCAGGGCCAGGAGTTCAAGGGTGGC
CATCTAAGCGTCTACCACTCCACGTATTCCATAACCAAGCCGGAGGCAAA
GTCGAATGAGGCAGCGCAGGCTGAGATTGAGGAGGCCATGACCATTGTGA
AAGAGGCGCAGAGTATGATCTCAGCGGCCATTGATCCGGTAATTGGAATG
CTCGCTAAGGACAAGCGCCGCAGGTCGAGATCACGGTCCCGTTCCCGGGA
CCGTCGCACCAGTCGATCCCGCTCGCATCGTTCCACATCGAGACGCCGTT
CCAGGCGTTCCGGTTCCAGAGAGCGACGTAGTGTGTCCCGATCACGCCGC
TCTAGGTCGCGTGGCAAGCACTCGTCCCGTTCTCGCAGCAAGCGCTCAAG
ATCACGACACCGTCGCAGCTCCTCACGTTCCAGGAGATCACGCTCCCGTG
GCGGCAAGCACTCTCGCTCCTCAAGGTCGCGTGGCAAGCGCTCCAGGTCC
CGCCATCGCCGCAGCACCTCACGCTCACGTAGCTCGCGTTCCCATGGCAC
CGGTGGAGGAGGCAGTGGCAACGGCAAACGTTCCCGATCCCGCGAGCGCA
GCAAGAAGTCACACCGCAGCGAGAAGCACTCTTCACGTTCTCCCCGATCT
AGAAGCAAGCGCAGCTCTCCCTCGCCGCCGCCAGCTACCGGCAGTAAGTC
ACGGTCCAGTCGCAGCAAGGATCCGGTCATCGTTTCCGCCAAGTCATCCC
GGCGGCGCGACCGCTCCCGTACTCCCGAAACTCGCAAACTCAAATCCATC
TCTGAGGACACTGAGGTTAAGAGCTCACGATCCAGCGCCGATTCGAAGTC
ACGCAAATCGGTTAGTGTCGAGAAGTCGGACAACATGGACATCTCCAACT
CGCCCTAGAAGCTTTCTAGACCAT

BS10188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 1542 CG4602-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 2134 CG4602-RA 136..1680 15..1559 7725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9913046..9914590 15..1559 7725 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:44:47 has no hits.

BS10188.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:36 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 1..1542 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:10 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 140..1687 15..1563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:55 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 138..1679 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:37 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 140..1687 15..1563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:04 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 138..1679 17..1558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:04 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9913048..9914589 17..1558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:55 Download gff for BS10188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9913048..9914589 17..1558 100   Plus

BS10188.pep Sequence

Translation from 16 to 1557

> BS10188.pep
MAGGNTPRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPV
QSRICYVKYTDTTSVPVAQHLTNTVFIDRALIVIPVLAIPEEYRALEMLK
NGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDPKLVEFNLPEYPAL
PSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDN
KTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPEAKSNEAA
QAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSR
SRSHRSTSRRRSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKRSRSRHRR
SSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS
GNGKRSRSRERSKKSHRSEKHSSRSPRSRSKRSSPSPPPATGSKSRSSRS
KDPVIVSAKSSRRRDRSRTPETRKLKSISEDTEVKSSRSSADSKSRKSVS
VEKSDNMDISNSP*

BS10188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-PA 513 CG4602-PA 1..513 1..513 2586 100 Plus
CG9915-PC 820 CG9915-PC 240..522 285..513 291 41 Plus
CG9915-PB 820 CG9915-PB 240..522 285..513 291 41 Plus
CG9915-PC 820 CG9915-PC 219..440 285..500 284 48.1 Plus
CG9915-PB 820 CG9915-PB 219..440 285..500 284 48.1 Plus
CG9915-PC 820 CG9915-PC 160..388 285..500 283 44.3 Plus
CG9915-PB 820 CG9915-PB 160..388 285..500 283 44.3 Plus
CG9915-PC 820 CG9915-PC 16..316 236..495 282 38.5 Plus
CG9915-PB 820 CG9915-PB 16..316 236..495 282 38.5 Plus
CG9915-PC 820 CG9915-PC 175..404 288..500 278 43.7 Plus
CG9915-PB 820 CG9915-PB 175..404 288..500 278 43.7 Plus
CG9915-PC 820 CG9915-PC 191..416 285..500 273 44.3 Plus
CG9915-PB 820 CG9915-PB 191..416 285..500 273 44.3 Plus
CG9915-PC 820 CG9915-PC 112..365 285..512 270 40.4 Plus
CG9915-PB 820 CG9915-PB 112..365 285..512 270 40.4 Plus
CG6695-PB 715 CG6695-PB 360..554 236..441 247 43.8 Plus
CG6695-PA 961 CG6695-PA 360..554 236..441 247 43.8 Plus
CG9915-PC 820 CG9915-PC 319..525 283..493 244 42.2 Plus
CG9915-PB 820 CG9915-PB 319..525 283..493 244 42.2 Plus
CG9915-PC 820 CG9915-PC 349..558 285..483 209 36.3 Plus
CG9915-PB 820 CG9915-PB 349..558 285..483 209 36.3 Plus
CG6695-PB 715 CG6695-PB 410..540 336..474 201 44.3 Plus
CG9915-PC 820 CG9915-PC 56..258 305..512 181 31.9 Plus
CG9915-PB 820 CG9915-PB 56..258 305..512 181 31.9 Plus