Clone Sequence Records
BS10191.3prime Sequence
904 bp (849 high quality bases) assembled on 2006-04-19
> BS10191.3prime
ATGGTCTAGAAAGCTTCTAGTAGGCCATGACATCGTGGACCCGGCGGAAT
CGTTCGCCTGCCTGTCTTAGCGTCAATCCTCGGGTTTCTGGCATTAGAAC
GGCAAAAGCTACGAGGCCTATTACCATAATAATTCCGACAGCGACAAAGT
ACGTGTAATAGAACTCTGCGGTGGGAACAAACTTGACGATCACAATGATA
TGTATCACCTGCTCCAAACACACGATCAGGCCAATCAAGAAGGGTTTCAC
TCTCATCGGAAAAGCCTCGCCCAGATAAGCGGATGAGCTGCAGATGAAGA
AACCGGCGAAGAACTGGAATGCCATGCCCAGACGGCACACTTGCCACATA
AAGTAATCGTCGAAGATGTGCCCGTAGTCCCCGTAGACTCCGGCCATGCC
CAGCATTAATCCAGCCATGCACATGAGTCCAAGTAGTGAGACAAATTTCC
GGCCCACGGTGTCCAGAACGGCGAAGGTGATCAGGGCACCGATCAGACGA
AGAAGTCCAAATATAATCGTGGGCCAGGAGTGCAGGGTGCCCTCCACCAG
CTCCGTGGTTGTCAGTATTGAATATGACAGTGGCACCGAGAAGGTGAAAG
CAACGAAGCAGCGGAAGAGCAGCAGCTTGAGAAAGGGCATCATAGACTCT
CCCAGCTGCTCGCCTACTCCTTGGGCGCTGCCTTCCACCACGTATAGCTT
TGCCTCGTCGTAGGCTCGATCTCCAGCCTCTCGAGTCCAATAGGATCCCA
TTAGCTGCTTCACACTGGCACGTGCCTTCTGCTCCTGGTTCTGGCGGATA
TAGAAGATCGGCGAGTCGATCGTGATGGCTACACTTCCCAGCGCAATGGC
CGTNAAAACGATTCCAAAAATTCCGTGTACTCGATTGATGGTCATGCCCC
ATCC
BS10191.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 1509 | CG17930-RA | 627..1509 | 899..17 | 4396 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 716..1603 | 904..17 | 4414 | 99.8 | Minus |
CG17929-RB | 1670 | CG17929-RB | 1261..1334 | 310..237 | 205 | 85.1 | Minus |
CG6901-RA | 1581 | CG6901-RA | 1193..1263 | 324..254 | 190 | 84.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328685..16329572 | 904..17 | 4414 | 99.8 | Minus |
3R | 32079331 | 3R | 16326922..16326995 | 310..237 | 205 | 85.1 | Minus |
3R | 32079331 | 3R | 16324740..16324810 | 324..254 | 190 | 84.5 | Minus |
Blast to na_te.dros performed 2015-02-12 13:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7048..7115 | 597..662 | 137 | 69.1 | Plus |
BS10191.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:19 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 622..1509 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:36 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 622..1509 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:25:39 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 716..1613 | 7..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:51:21 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 716..1613 | 7..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:51:21 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16328685..16329582 | 7..904 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:25:39 Download gff for
BS10191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12154407..12155304 | 7..904 | 99 | | Minus |
BS10191.5prime Sequence
857 bp (830 high quality bases) assembled on 2006-04-19
> BS10191.5prime
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGG
BS10191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 1509 | CG17930-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 95..935 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328439..16328904 | 392..857 | 2330 | 100 | Plus |
3R | 32079331 | 3R | 16327943..16328144 | 17..218 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 16328202..16328378 | 216..392 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:38:44 has no hits.
BS10191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:20 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:38 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:02 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 87..935 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:50 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 87..935 | 10..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:50 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16327935..16328144 | 10..218 | 98 | -> | Plus |
3R | 16328205..16328377 | 219..391 | 100 | -> | Plus |
3R | 16328439..16328904 | 392..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:02 Download gff for
BS10191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12153657..12153866 | 10..218 | 98 | -> | Plus |
arm_3R | 12153927..12154099 | 219..391 | 100 | -> | Plus |
arm_3R | 12154161..12154626 | 392..857 | 100 | | Plus |
BS10191.complete Sequence
1541 bp (1541 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636588
> BS10191.complete
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGGAAGGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGGAGAGTCTAT
GATGCCCTTTCTCAAGCTGCTGCTCTTCCGCTGCTTCGTTGCTTTCACCT
TCTCGGTGCCACTGTCATATTCAATACTGACAACCACGGAGCTGGTGGAG
GGCACCCTGCACTCCTGGCCCACGATTATATTTGGACTTCTTCGTCTGAT
CGGTGCCCTGATCACCTTCGCCGTTCTGGACACCGTGGGCCGGAAATTTG
TCTCACTACTTGGACTCATGTGCATGGCTGGATTAATGCTGGGCATGGCC
GGAGTCTACGGGGACTACGGGCACATCTTCGACGATTACTTTATGTGGCA
AGTGTGCCGTCTGGGCATGGCATTCCAGTTCTTCGCCGGTTTCTTCATCT
GCAGCTCATCCGCTTATCTGGGCGAGGCTTTTCCGATGAGAGTGAAACCC
TTCTTGATTGGCCTGATCGTGTGTTTGGAGCAGGTGATACATATCATTGT
GATCGTCAAGTTTGTTCCCACCGCAGAGTTCTATTACACGTACTTTGTCG
CTGTCGGAATTATTATGGTAATAGGCCTCGTAGCTTTTGCCGTTCTAATG
CCAGAAACCCGAGGATTGACGCTAAGACAGGCAGGCGAACGATTCCGCCG
GGTCCACGATGTCATGGCCTACTAGAAGCTTTCTAGACCAT
BS10191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1509 | CG17930-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
CG17929-RB | 1476 | CG17929-PB | 1180..1253 | 1232..1305 | 205 | 85.1 | Plus |
CG6901-RA | 1458 | CG6901-PA | 1145..1215 | 1218..1288 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 95..1603 | 17..1525 | 7545 | 100 | Plus |
CG17929-RB | 1670 | CG17929-RB | 1261..1334 | 1232..1305 | 205 | 85.1 | Plus |
CG6901-RA | 1581 | CG6901-RA | 1193..1263 | 1218..1288 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328439..16329572 | 392..1525 | 5670 | 100 | Plus |
3R | 32079331 | 3R | 16327943..16328144 | 17..218 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 16328202..16328378 | 216..392 | 885 | 100 | Plus |
3R | 32079331 | 3R | 16326922..16326995 | 1232..1305 | 205 | 85.1 | Plus |
3R | 32079331 | 3R | 16324740..16324810 | 1218..1288 | 190 | 84.5 | Plus |
Blast to na_te.dros performed 2014-11-27 16:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7048..7115 | 945..880 | 137 | 69.1 | Minus |
BS10191.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:40 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:11 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 86..1612 | 10..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:20 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 95..1603 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:40 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 86..1612 | 10..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:45 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 95..1603 | 17..1525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:45 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16327943..16328144 | 17..218 | 100 | -> | Plus |
3R | 16328205..16328377 | 219..391 | 100 | -> | Plus |
3R | 16328439..16329572 | 392..1525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:20 Download gff for
BS10191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12153665..12153866 | 17..218 | 100 | -> | Plus |
arm_3R | 12153927..12154099 | 219..391 | 100 | -> | Plus |
arm_3R | 12154161..12155294 | 392..1525 | 100 | | Plus |
BS10191.pep Sequence
Translation from 16 to 1524
> BS10191.pep
MTTTYVTAGPVPVQQTTYITTGPQQTTYITNGRQQQPPPPPPPTTVIITT
QSNSRWATPTQTQSGTAATLLFVYAGMDMAQGLGWNLTAVSANTLEFQYS
WFIGVIIGAVVSAITSAFLPKIVFYGLGGVMNLIDAIIFVSAPYEYESIL
AARYVGGVGIGLITVPFLIHSAEIASSTNRGTCCALEQYGLALGVAIQVI
YDSQWSQGLGMTINRVHGIFGIVFTAIALGSVAITIDSPIFYIRQNQEQK
ARASVKQLMGSYWTREAGDRAYDEAKLYVVEGSAQGVGEQLGESMMPFLK
LLLFRCFVAFTFSVPLSYSILTTTELVEGTLHSWPTIIFGLLRLIGALIT
FAVLDTVGRKFVSLLGLMCMAGLMLGMAGVYGDYGHIFDDYFMWQVCRLG
MAFQFFAGFFICSSSAYLGEAFPMRVKPFLIGLIVCLEQVIHIIVIVKFV
PTAEFYYTYFVAVGIIMVIGLVAFAVLMPETRGLTLRQAGERFRRVHDVM
AY*
BS10191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 502 | CG17930-PA | 1..502 | 1..502 | 2583 | 100 | Plus |
CG17929-PB | 491 | CG17929-PB | 1..491 | 1..502 | 1165 | 47.2 | Plus |
CG6901-PA | 485 | CG6901-PA | 1..485 | 1..502 | 1163 | 46.6 | Plus |
CG42826-PA | 473 | CG42826-PA | 8..467 | 41..495 | 496 | 26.8 | Plus |
CG42825-PA | 518 | CG6640-PB | 22..512 | 10..495 | 461 | 29.2 | Plus |