Clone BS10196 Report

Search the DGRC for BS10196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptome-RF
Protein status:BS10196.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10196.3prime Sequence

889 bp (791 high quality bases) assembled on 2006-04-19

> BS10196.3prime
ATGGTCTAGAAAGCTTTTATTTGGCACTTTTCATTAGGCGACTGCTGGCA
AAACATTCGCCAAAGAAGCGATCCAATGAATGATACAAATGGGGTCGCAC
ATTGGACAGTCCATGATCCTCGTCAGCGTAGCTAATCTGCTTGAAGAGAA
TATCTTGACGCTCCAGATTCTTGGCCAATATCATGGCCTGCTGGTAGTGC
ACATTATCATCCAGTGTGCCATGTACCAGAAGGTACTTCTTACCCCTCAG
CTTCACGGCCATTGTGCTCAGTCTAGAGTTGGCATAGCCCAGCTCATTCG
TGTTGGGAAGACCCATATAGCGCTCTGTGTAAATGGAGTCATAGTAAGCC
CAATCCGTGACTGGAGCTATCGAGGCTGCACACTTGAACACCTTGGCTTC
ATCATTGGCCAGAGCCATGGCAGCCGCGTAGCCACCATATGACCAGCCCC
AAATGCCAACGTGATCGGGATCAATGTAGTTAAACAGCGTAGAGAGTTTT
TGAGTTACGTTGATCTGATCGCTGATCTCCACGGTGCCCAACTTTAAGTA
GATGGCATGGAGTAGACTCTCTCCACGGAGTCCGGAGCCACGACCATCGA
TCTTGGCATAGATCACAGACTGATTGGAGCTCAAATATGTGCCCCAGTCC
ACCATCCATTTGTTGGTAACAGAATAGGAATCTGGGCCACCATAGACATC
CACGAGCATGGGATACTTGGTTGCGCCACTTGTGTCCAAGTTGGGCGGCA
GCTGGAGGAGCACCTTTGCCTGAAAGCCGCCGTCAATGTCTACGGTTAGA
ATTTTGTGGGAAGGTAGAGCCACGCCCTTCAGTTTGGCACGCAGGCTTTC
ATTTGTTTCCCAGTCGAGGACTTTAGAGATGACAACTTG

BS10196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32145-PA 2409 ome-RA 1537..2409 889..17 4340 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
ome-RH 3263 CG42280-RH 1617..2489 889..17 4350 99.9 Minus
ome-RG 4070 CG32145-RB 2424..3296 889..17 4350 99.9 Minus
ome-RF 3356 CG32145-RA 1710..2582 889..17 4350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14745957..14746177 889..669 1090 99.5 Minus
3L 28110227 3L 14746707..14746913 340..134 1035 100 Minus
3L 28110227 3L 14746235..14746404 670..501 850 100 Minus
3L 28110227 3L 14746487..14746647 500..340 805 100 Minus
3L 28110227 3L 14746978..14747094 133..17 585 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:55:49 has no hits.

BS10196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:27 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
ome-PA 1537..2409 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:48 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32145-PA 1537..2409 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:54 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
ome-RF 1710..2582 17..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:18 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
ome-RF 1710..2582 17..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:18 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14746708..14746913 134..339 100 -> Minus
3L 14746978..14747094 17..133 100   Minus
3L 14745957..14746175 671..889 99 -> Minus
3L 14746235..14746404 501..670 100 -> Minus
3L 14746487..14746647 340..500 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:54 Download gff for BS10196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14739057..14739275 671..889 99 -> Minus
arm_3L 14739335..14739504 501..670 100 -> Minus
arm_3L 14739587..14739747 340..500 100 -> Minus
arm_3L 14739808..14740013 134..339 100 -> Minus
arm_3L 14740078..14740194 17..133 100   Minus

BS10196.5prime Sequence

757 bp (756 high quality bases) assembled on 2006-04-19

> BS10196.5prime
GAAGTTATCAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAG
CACAGAGCGATCAGAATCTAATGCATACCAAGGAGAAGAAGCGCCGGGTG
CGAATCATCCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTATTGGC
CACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGACGACT
CTGACTCAAACTCAAACAATGCCATCGATTTGGAGGATGTGCTAAGTGGT
CAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAACAGTCT
CATTTACAAGGAGAATACGTCCATCATGGAGTTCGATGCCAAGACGGGTG
AACGTTCCATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACGAAAAG
TCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAGAACTT
CCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAATCTGAACACAAAAG
AATTCATCCAGTTGACCATCCAAAACGAGCAGCACTACCTGAGCATGGTC
CAATGGTCACCGGTGGGAAATGCCCTTGTGATCAATTACGATCGGAATCT
GTACTACAAGGAGAGTGCATTGGCGCAGGAGATTGCCCTCACTAGCGATG
AACAAGCGGGTATACTGAATGGCATTCCCGATTGGGTGTACGAGGAAGAG
GTATTCAGCTCCAATGTGGCCACCTGGTTCAACCCATCGGGCACCCAATT
GGCCTTC

BS10196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32145-PA 2409 ome-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
ome-RF 3356 CG32145-RA 174..914 17..757 3705 100 Plus
ome-RG 4070 CG32145-RB 934..1628 63..757 3475 100 Plus
ome-RE 4109 CG42280-RE 973..1667 63..757 3475 100 Plus
ome-RG 4070 CG32145-RB 174..221 17..64 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14744530..14744968 319..757 2195 100 Plus
3L 28110227 3L 14744187..14744443 63..319 1285 100 Plus
3L 28110227 3L 14736088..14736135 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:51:37 has no hits.

BS10196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:28 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
ome-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:49 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32145-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:35 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
ome-RF 174..914 17..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:26:14 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
ome-RF 174..914 17..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:26:14 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14736088..14736135 17..64 100 -> Plus
3L 14744189..14744443 65..319 100 -> Plus
3L 14744531..14744968 320..757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:35 Download gff for BS10196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14729188..14729235 17..64 100 -> Plus
arm_3L 14737289..14737543 65..319 100 -> Plus
arm_3L 14737631..14738068 320..757 100   Plus

BS10196.complete Sequence

2441 bp assembled on 2007-11-30

GenBank Submission: FJ636589

> BS10196.complete
GAAGTTATCAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAG
CACAGAGCGATCAGAATCTAATGCATACCAAGGAGAAGAAGCGCCGGGTG
CGAATCATCCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTATTGGC
CACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGACGACT
CTGACTCAAACTCAAACAATGCCATCGATTTGGAGGATGTGCTAAGTGGT
CAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAACAGTCT
CATTTACAAGGAGAATACGTCCATCATGGAGTTCGATGCCAAGACGGGTG
AACGTTCCATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACGAAAAG
TCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAGAACTT
CCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAATCTGAACACAAAAG
AATTCATCCAGTTGACCATCCAAAACGAGCAGCACTACCTGAGCATGGTC
CAATGGTCACCGGTGGGAAATGCCCTTGTGATCAATTACGATCGGAATCT
GTACTACAAGGAGAGTGCATTGGCGCAGGAGATTGCCCTCACTAGCGATG
AACAAGCGGGTATACTGAATGGCATTCCCGATTGGGTGTACGAGGAAGAG
GTATTCAGCTCCAATGTGGCCACCTGGTTCAACCCATCGGGCACCCAATT
GGCCTTCATCAAGTTCGACGATTCGTCCACTCACCTGATCAATTTCCCCT
ACTACGGAGATGCCGGCGATTTGCGCTATCAGTATCCACTGCATCAGGTC
ATCGCCTATCCAAAGGCTGGTTCCTCGAATCCGCGGGTGGAACTGGTGAT
GGTCGATCTAAAGAGAGCCGTTGCTGGTGGAGATTTCGTGACCGTGATGC
CGGTTCCGTCGGCCCTCAACACGGAAACGGACTACATTGTCACCGTGGTC
AGTTGGGTGGACGATGACAACGTTCTGTCCATCTGGATGAACCGCATTCA
AAATGCCGCCTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGATTT
ATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCCGTTC
CGTAACCGCAATGGATCCCGTCTGGCCTTCGTCCTGCCGCACAACAACTA
TAAGCACGTCCAGCTCCTGAGCTCCACGGTGGCCAGTTCCGAGCCACAAG
CACTGGAGCCCCTGACCGAGGGCAAGTATGTGGTGGACAGCATCCTCCAC
TGGGACGGAAAGAACGACATCATATTCTACACGGCCAACACAGAGGATCA
TCCCGAGCAGCTGCATCTGTACGCCATTCGGGCACTGGCCAAGCAGAGTC
CCAAGTGCCTCACGTGCAACCTTATCAAGTCCGGGGATGTGCAACAGACC
TACTTCTCGGCCACTTTCAACGACAATAACCACATTGTGATCACCTCTCT
GGGACCTGGAATACCCACAACCCATATATACGAGTGGAAATATGAGAACT
CTCAAGTTGTCATCTCTAAAGTCCTCGACTGGGAAACCAATGAAAGCCTG
CGTGCCAAACTGAAGGGCGTGGCTCTACCTTCCCACAAAATTCTAACCGT
AGACATTGACGGCGGCTTTCAGGCAAAGGTGCTCCTCCAGCTGCCGCCCA
ACTTGGACACAAGTGGCGCAACCAAGTATCCCATGCTCGTGGATGTCTAT
GGTGGCCCAGATTCCTATTCTGTTACCAACAAATGGATGGTGGACTGGGG
CACATATTTGAGCTCCAATCAGTCTGTGATCTATGCCAAGATCGATGGTC
GTGGCTCCGGACTCCGTGGAGAGAGTCTACTCCATGCCATCTACTTAAAG
TTGGGCACCGTGGAGATCAGCGATCAGATCAACGTAACTCAAAAACTCTC
TACGCTGTTTAACTACATTGATCCCGATCACGTTGGCATTTGGGGCTGGT
CATATGGTGGCTACGCGGCTGCCATGGCTCTGGCCAATGATGAAGCCAAG
GTGTTCAAGTGTGCAGCCTCGATAGCTCCAGTCACGGATTGGGCTTACTA
TGACTCCATTTACACAGAGCGCTATATGGGTCTTCCCAACACGAATGAGC
TGGGCTATGCCAACTCTAGACTGAGCACAATGGCCGTGAAGCTGAGGGGT
AAGAAGTACCTTCTGGTACATGGCACACTGGATGATAATGTGCACTACCA
GCAGGCCATGATATTGGCCAAGAATCTGGAGCGTCAAGATATTCTCTTCA
AGCAGATTAGCTACGCTGACGAGGATCATGGACTGTCCAATGTGCGACCC
CATTTGTATCATTCATTGGATCGCTTCTTTGGCGAATGTTTTGCCAGCAG
TCGCCTAATGAAAAGTGCCAAATAAAAGCTTTCTAGACCAT

BS10196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
ome-RF 2409 CG42280-PF 1..2409 17..2425 12045 100 Plus
ome-RG 3123 CG42280-PG 761..3123 63..2425 11815 100 Plus
ome-RE 2772 CG42280-PE 410..2772 63..2425 11815 100 Plus
ome-RG 3123 CG42280-PG 1..48 17..64 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
ome-RF 3356 CG32145-RA 174..2582 17..2425 12045 100 Plus
ome-RG 4070 CG32145-RB 934..3296 63..2425 11815 100 Plus
ome-RE 4109 CG42280-RE 973..3335 63..2425 11815 100 Plus
ome-RG 4070 CG32145-RB 174..221 17..64 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14744530..14745307 319..1096 3890 100 Plus
3L 28110227 3L 14745427..14745881 1096..1550 2275 100 Plus
3L 28110227 3L 14744187..14744443 63..319 1285 100 Plus
3L 28110227 3L 14745955..14746177 1551..1773 1115 100 Plus
3L 28110227 3L 14746707..14746913 2102..2308 1035 100 Plus
3L 28110227 3L 14746235..14746404 1772..1941 850 100 Plus
3L 28110227 3L 14746487..14746647 1942..2102 805 100 Plus
3L 28110227 3L 14746978..14747094 2309..2425 585 100 Plus
3L 28110227 3L 14736088..14736135 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:01:37 has no hits.

BS10196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:06 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
ome-RF 1..2409 17..2425 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:25 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
ome-RF 171..2577 17..2423 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:14 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
ome-RF 174..2580 17..2423 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:42 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
ome-RF 171..2577 17..2423 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:35 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
ome-RF 174..2580 17..2423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:35 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14736088..14736135 17..64 100 -> Plus
3L 14744189..14744443 65..319 100 -> Plus
3L 14744531..14745307 320..1096 100 -> Plus
3L 14745428..14745881 1097..1550 100 -> Plus
3L 14745955..14746175 1551..1771 100 -> Plus
3L 14746235..14746404 1772..1941 100 -> Plus
3L 14746487..14746647 1942..2102 100 -> Plus
3L 14746708..14746913 2103..2308 100 -> Plus
3L 14746978..14747092 2309..2423 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:14 Download gff for BS10196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14739808..14740013 2103..2308 100 -> Plus
arm_3L 14740078..14740192 2309..2423 100   Plus
arm_3L 14729188..14729235 17..64 100 -> Plus
arm_3L 14737289..14737543 65..319 100 -> Plus
arm_3L 14737631..14738407 320..1096 100 -> Plus
arm_3L 14738528..14738981 1097..1550 100 -> Plus
arm_3L 14739055..14739275 1551..1771 100 -> Plus
arm_3L 14739335..14739504 1772..1941 100 -> Plus
arm_3L 14739587..14739747 1942..2102 100 -> Plus

BS10196.pep Sequence

Translation from 16 to 2424

> BS10196.pep
MSGNDVSVTETAQSDQNLMHTKEKKRRVRIILTVVTTVIAVALLATALVF
ILRTDEKDADDSDSNSNNAIDLEDVLSGQLYAKRFNGSWSNGNSLIYKEN
TSIMEFDAKTGERSILLEDAQHYVLYEKSADGEFLLLAKNYKKNFRYSFL
AEYDLYNLNTKEFIQLTIQNEQHYLSMVQWSPVGNALVINYDRNLYYKES
ALAQEIALTSDEQAGILNGIPDWVYEEEVFSSNVATWFNPSGTQLAFIKF
DDSSTHLINFPYYGDAGDLRYQYPLHQVIAYPKAGSSNPRVELVMVDLKR
AVAGGDFVTVMPVPSALNTETDYIVTVVSWVDDDNVLSIWMNRIQNAAYV
VTFDGLNRKVIYSAESKTGWVDLYTAPFRNRNGSRLAFVLPHNNYKHVQL
LSSTVASSEPQALEPLTEGKYVVDSILHWDGKNDIIFYTANTEDHPEQLH
LYAIRALAKQSPKCLTCNLIKSGDVQQTYFSATFNDNNHIVITSLGPGIP
TTHIYEWKYENSQVVISKVLDWETNESLRAKLKGVALPSHKILTVDIDGG
FQAKVLLQLPPNLDTSGATKYPMLVDVYGGPDSYSVTNKWMVDWGTYLSS
NQSVIYAKIDGRGSGLRGESLLHAIYLKLGTVEISDQINVTQKLSTLFNY
IDPDHVGIWGWSYGGYAAAMALANDEAKVFKCAASIAPVTDWAYYDSIYT
ERYMGLPNTNELGYANSRLSTMAVKLRGKKYLLVHGTLDDNVHYQQAMIL
AKNLERQDILFKQISYADEDHGLSNVRPHLYHSLDRFFGECFASSRLMKS
AK*

BS10196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
ome-PF 802 CG32145-PA 1..802 1..802 4185 100 Plus
ome-PG 1040 CG32145-PB 254..1040 16..802 4108 99.9 Plus
ome-PE 923 CG42280-PE 137..923 16..802 4108 99.9 Plus
ome-PH 784 CG42280-PH 1..784 19..802 4097 100 Plus
CG11034-PC 751 CG11034-PC 32..741 61..791 1041 33.5 Plus