Clone Sequence Records
BS10201.3prime Sequence
948 bp (841 high quality bases) assembled on 2006-04-19
> BS10201.3prime
ATGGTCTAGAAAGCTTTCAGACGAGCCGCGTTAGACGCGAAGCGCTGCCG
GCATTGGGATCTACAGGCAGGGCTACATGGTCAACATGCTGCACATTGCG
GAAGTAAGCGTGCTGCAGTGCGTCCTTGGCTGAGATGCGCAGGTTGGGAT
CATAGCACAGCATTGACATTATGAGTTCGTGCGCCTCGTGTTCGGTTATG
GGTTGTGGCATGTTAGTTCCCTCCCATCTAGGGAACTTGGTCTTAAAGTC
TGGCAGCTGCGTCACACCAGGCCAATTTGTTTCATCAGGTGTGCTTAAGG
TACGGAAAATCCTATAAAGTTGATCGATCTCGCTGTCTCCAGGAAACAAG
GAGCGGCGCATAATCATTTCAGAGAAAATGCAGCCTAGACTCCAGATGTC
CACGCCCGTGGAGTAGAATTTCGTGCCCAACAGAATCTCTGGAGCTCGGT
ACCAGAGGGTGACGACTTCGTGTGTGTACGCCCGCATAGGCACGTTGAAG
GCCCTTGCTAGGCCAAAGTCAGCCAACTTTATTTTGCCCGCCGTGTCTAC
GAGAAGGTTCTGGGGCTTGAGATCGCGATGCAGGATACGATTCGTGTGGC
AAAAGCCGACGGCATCTAATATCTGATGCATATAGCTCTTTATCAACTGA
GGGGTGAACACGTCTTTTTTCTTATCCATCAGCTTCTTTAGATCCATGTT
CAGGTACTCGAATATCATGTACAGATTGTTGCCGGAAATGACTACGTCAA
ATAGTTGGACCACATTTGGGTGCTTAAGGTTCTTCAGCAGGGAGATCTCT
CGAATGGCCGTCGAAGGAACACCCTCCGTTTCGCCTTCTAGCCGAATCTT
TTTGAGGGCCACATCCTGGCCGGTGGAGTTGCTACGCGCTTTGTAACTAT
ACCGTANGTGCCCTCGCCAATCTTTTCGGGCGCGTGAAAGTTATCTAG
BS10201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10498-PA | 945 | cdc2c-RA | 66..945 | 896..17 | 4400 | 100 | Minus |
CG10498-PB | 945 | cdc2c-RB | 66..945 | 896..17 | 4400 | 100 | Minus |
CG10498-PA | 945 | cdc2c-RA | 32..66 | 929..895 | 156 | 97.1 | Minus |
CG10498-PB | 945 | cdc2c-RB | 32..66 | 929..895 | 156 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk2-RC | 2224 | CG10498-RC | 87..1019 | 948..17 | 4584 | 99.6 | Minus |
Cdk2-RB | 1215 | CG10498-RB | 87..1019 | 948..17 | 4584 | 99.6 | Minus |
Cdk2-RA | 1140 | CG10498-RA | 87..1019 | 948..17 | 4584 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20736731..20736929 | 365..167 | 995 | 100 | Minus |
3R | 32079331 | 3R | 20736090..20736286 | 834..638 | 985 | 100 | Minus |
3R | 32079331 | 3R | 20736509..20736672 | 528..365 | 820 | 100 | Minus |
3R | 32079331 | 3R | 20736984..20737134 | 167..17 | 755 | 100 | Minus |
3R | 32079331 | 3R | 20736339..20736451 | 639..527 | 565 | 100 | Minus |
3R | 32079331 | 3R | 20735709..20735824 | 948..834 | 444 | 94 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:34:07 has no hits.
BS10201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:30 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-PA | 13..945 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:51 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10498-PB | 13..945 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:30 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RA | 87..1026 | 9..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:40 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk2-RA | 87..1026 | 9..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:40 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20736732..20736929 | 167..364 | 100 | -> | Minus |
3R | 20736985..20737141 | 9..166 | 97 | | Minus |
3R | 20735709..20735824 | 834..948 | 96 | -> | Minus |
3R | 20736091..20736286 | 638..833 | 100 | -> | Minus |
3R | 20736341..20736451 | 527..637 | 100 | -> | Minus |
3R | 20736511..20736672 | 365..526 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:30 Download gff for
BS10201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16561431..16561546 | 834..948 | 96 | -> | Minus |
arm_3R | 16562063..16562173 | 527..637 | 100 | -> | Minus |
arm_3R | 16561813..16562008 | 638..833 | 100 | -> | Minus |
arm_3R | 16562233..16562394 | 365..526 | 100 | -> | Minus |
arm_3R | 16562454..16562651 | 167..364 | 100 | -> | Minus |
arm_3R | 16562707..16562863 | 9..166 | 97 | | Minus |
BS10201.5prime Sequence
959 bp (849 high quality bases) assembled on 2006-04-19
> BS10201.5prime
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCNGCATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCCATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCT
BS10201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10498-PA | 945 | cdc2c-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
CG10498-PB | 945 | cdc2c-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
CG10498-PA | 945 | cdc2c-RA | 866..943 | 882..959 | 365 | 98.7 | Plus |
CG10498-PB | 945 | cdc2c-RB | 866..943 | 882..959 | 365 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk2-RC | 2224 | CG10498-RC | 75..1017 | 17..959 | 4655 | 99.7 | Plus |
Cdk2-RB | 1215 | CG10498-RB | 75..1017 | 17..959 | 4655 | 99.7 | Plus |
Cdk2-RA | 1140 | CG10498-RA | 75..1017 | 17..959 | 4655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20736731..20736929 | 613..811 | 995 | 100 | Plus |
3R | 32079331 | 3R | 20736090..20736286 | 144..340 | 985 | 100 | Plus |
3R | 32079331 | 3R | 20736509..20736672 | 450..613 | 820 | 100 | Plus |
3R | 32079331 | 3R | 20736984..20737132 | 811..959 | 689 | 97.3 | Plus |
3R | 32079331 | 3R | 20735697..20735824 | 17..144 | 640 | 100 | Plus |
3R | 32079331 | 3R | 20736339..20736451 | 339..451 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:04:03 has no hits.
BS10201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:31 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-PA | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:52 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10498-PB | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:22 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RA | 70..1017 | 10..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:35 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk2-RA | 70..1017 | 10..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:35 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20736985..20737132 | 812..959 | 97 | | Plus |
3R | 20735692..20735824 | 10..144 | 97 | -> | Plus |
3R | 20736091..20736286 | 145..340 | 100 | -> | Plus |
3R | 20736341..20736451 | 341..451 | 100 | -> | Plus |
3R | 20736511..20736672 | 452..613 | 100 | -> | Plus |
3R | 20736732..20736929 | 614..811 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:22 Download gff for
BS10201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16561414..16561546 | 10..144 | 97 | -> | Plus |
arm_3R | 16561813..16562008 | 145..340 | 100 | -> | Plus |
arm_3R | 16562063..16562173 | 341..451 | 100 | -> | Plus |
arm_3R | 16562233..16562394 | 452..613 | 100 | -> | Plus |
arm_3R | 16562454..16562651 | 614..811 | 100 | -> | Plus |
arm_3R | 16562707..16562854 | 812..959 | 97 | | Plus |
BS10201.complete Sequence
977 bp assembled on 2007-10-17
GenBank Submission: FJ636590
> BS10201.complete
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCGCAATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCAATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCTGAAAGCTTTCTAGACCAT
BS10201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk2-RC | 945 | CG10498-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
Cdk2-RB | 945 | CG10498-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
Cdk2-RA | 945 | CG10498-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk2-RC | 2224 | CG10498-RC | 75..1019 | 17..961 | 4725 | 100 | Plus |
Cdk2-RB | 1215 | CG10498-RB | 75..1019 | 17..961 | 4725 | 100 | Plus |
Cdk2-RA | 1140 | CG10498-RA | 75..1019 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20736731..20736929 | 613..811 | 995 | 100 | Plus |
3R | 32079331 | 3R | 20736090..20736286 | 144..340 | 985 | 100 | Plus |
3R | 32079331 | 3R | 20736509..20736672 | 450..613 | 820 | 100 | Plus |
3R | 32079331 | 3R | 20736984..20737134 | 811..961 | 755 | 100 | Plus |
3R | 32079331 | 3R | 20735697..20735824 | 17..144 | 640 | 100 | Plus |
3R | 32079331 | 3R | 20736339..20736451 | 339..451 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:35 has no hits.
BS10201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:08 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RB | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:21 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RC | 73..1029 | 10..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:20 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RA | 75..1018 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:12 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2c-RB | 78..1021 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:40 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk2-RA | 75..1018 | 17..960 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:40 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20735697..20735824 | 17..144 | 100 | -> | Plus |
3R | 20736091..20736286 | 145..340 | 100 | -> | Plus |
3R | 20736341..20736451 | 341..451 | 100 | -> | Plus |
3R | 20736511..20736672 | 452..613 | 100 | -> | Plus |
3R | 20736732..20736929 | 614..811 | 100 | -> | Plus |
3R | 20736985..20737133 | 812..960 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:20 Download gff for
BS10201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16561419..16561546 | 17..144 | 100 | -> | Plus |
arm_3R | 16561813..16562008 | 145..340 | 100 | -> | Plus |
arm_3R | 16562063..16562173 | 341..451 | 100 | -> | Plus |
arm_3R | 16562233..16562394 | 452..613 | 100 | -> | Plus |
arm_3R | 16562454..16562651 | 614..811 | 100 | -> | Plus |
arm_3R | 16562707..16562855 | 812..960 | 100 | | Plus |
BS10201.pep Sequence
Translation from 16 to 960
> BS10201.pep
MTTILDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPS
TAIREISLLKNLKHPNVVQLFDVVISGNNLYMIFEYLNMDLKKLMDKKKD
VFTPQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVDTAGKIKLADFG
LARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSEMI
MRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTN
MPQPITEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNVQHVDHVALPV
DPNAGSASRLTRLV*
BS10201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk2-PC | 314 | CG10498-PC | 1..314 | 1..314 | 1646 | 100 | Plus |
Cdk2-PB | 314 | CG10498-PB | 1..314 | 1..314 | 1646 | 100 | Plus |
Cdk2-PA | 314 | CG10498-PA | 1..314 | 1..314 | 1646 | 100 | Plus |
Cdk1-PA | 297 | CG5363-PA | 1..291 | 5..291 | 913 | 59.5 | Plus |
Cdk5-PA | 294 | CG8203-PA | 1..294 | 5..295 | 734 | 47.3 | Plus |