Clone BS10201 Report

Search the DGRC for BS10201

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCdk2-RA
Protein status:BS10201.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10201.3prime Sequence

948 bp (841 high quality bases) assembled on 2006-04-19

> BS10201.3prime
ATGGTCTAGAAAGCTTTCAGACGAGCCGCGTTAGACGCGAAGCGCTGCCG
GCATTGGGATCTACAGGCAGGGCTACATGGTCAACATGCTGCACATTGCG
GAAGTAAGCGTGCTGCAGTGCGTCCTTGGCTGAGATGCGCAGGTTGGGAT
CATAGCACAGCATTGACATTATGAGTTCGTGCGCCTCGTGTTCGGTTATG
GGTTGTGGCATGTTAGTTCCCTCCCATCTAGGGAACTTGGTCTTAAAGTC
TGGCAGCTGCGTCACACCAGGCCAATTTGTTTCATCAGGTGTGCTTAAGG
TACGGAAAATCCTATAAAGTTGATCGATCTCGCTGTCTCCAGGAAACAAG
GAGCGGCGCATAATCATTTCAGAGAAAATGCAGCCTAGACTCCAGATGTC
CACGCCCGTGGAGTAGAATTTCGTGCCCAACAGAATCTCTGGAGCTCGGT
ACCAGAGGGTGACGACTTCGTGTGTGTACGCCCGCATAGGCACGTTGAAG
GCCCTTGCTAGGCCAAAGTCAGCCAACTTTATTTTGCCCGCCGTGTCTAC
GAGAAGGTTCTGGGGCTTGAGATCGCGATGCAGGATACGATTCGTGTGGC
AAAAGCCGACGGCATCTAATATCTGATGCATATAGCTCTTTATCAACTGA
GGGGTGAACACGTCTTTTTTCTTATCCATCAGCTTCTTTAGATCCATGTT
CAGGTACTCGAATATCATGTACAGATTGTTGCCGGAAATGACTACGTCAA
ATAGTTGGACCACATTTGGGTGCTTAAGGTTCTTCAGCAGGGAGATCTCT
CGAATGGCCGTCGAAGGAACACCCTCCGTTTCGCCTTCTAGCCGAATCTT
TTTGAGGGCCACATCCTGGCCGGTGGAGTTGCTACGCGCTTTGTAACTAT
ACCGTANGTGCCCTCGCCAATCTTTTCGGGCGCGTGAAAGTTATCTAG

BS10201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10498-PA 945 cdc2c-RA 66..945 896..17 4400 100 Minus
CG10498-PB 945 cdc2c-RB 66..945 896..17 4400 100 Minus
CG10498-PA 945 cdc2c-RA 32..66 929..895 156 97.1 Minus
CG10498-PB 945 cdc2c-RB 32..66 929..895 156 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-RC 2224 CG10498-RC 87..1019 948..17 4584 99.6 Minus
Cdk2-RB 1215 CG10498-RB 87..1019 948..17 4584 99.6 Minus
Cdk2-RA 1140 CG10498-RA 87..1019 948..17 4584 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20736731..20736929 365..167 995 100 Minus
3R 32079331 3R 20736090..20736286 834..638 985 100 Minus
3R 32079331 3R 20736509..20736672 528..365 820 100 Minus
3R 32079331 3R 20736984..20737134 167..17 755 100 Minus
3R 32079331 3R 20736339..20736451 639..527 565 100 Minus
3R 32079331 3R 20735709..20735824 948..834 444 94 Minus
Blast to na_te.dros performed on 2015-02-12 18:34:07 has no hits.

BS10201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:30 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-PA 13..945 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:51 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10498-PB 13..945 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:30 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RA 87..1026 9..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:40 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk2-RA 87..1026 9..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:40 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20736732..20736929 167..364 100 -> Minus
3R 20736985..20737141 9..166 97   Minus
3R 20735709..20735824 834..948 96 -> Minus
3R 20736091..20736286 638..833 100 -> Minus
3R 20736341..20736451 527..637 100 -> Minus
3R 20736511..20736672 365..526 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:30 Download gff for BS10201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16561431..16561546 834..948 96 -> Minus
arm_3R 16562063..16562173 527..637 100 -> Minus
arm_3R 16561813..16562008 638..833 100 -> Minus
arm_3R 16562233..16562394 365..526 100 -> Minus
arm_3R 16562454..16562651 167..364 100 -> Minus
arm_3R 16562707..16562863 9..166 97   Minus

BS10201.5prime Sequence

959 bp (849 high quality bases) assembled on 2006-04-19

> BS10201.5prime
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCNGCATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCCATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCT

BS10201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10498-PA 945 cdc2c-RA 1..862 17..878 4310 100 Plus
CG10498-PB 945 cdc2c-RB 1..862 17..878 4310 100 Plus
CG10498-PA 945 cdc2c-RA 866..943 882..959 365 98.7 Plus
CG10498-PB 945 cdc2c-RB 866..943 882..959 365 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-RC 2224 CG10498-RC 75..1017 17..959 4655 99.7 Plus
Cdk2-RB 1215 CG10498-RB 75..1017 17..959 4655 99.7 Plus
Cdk2-RA 1140 CG10498-RA 75..1017 17..959 4655 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20736731..20736929 613..811 995 100 Plus
3R 32079331 3R 20736090..20736286 144..340 985 100 Plus
3R 32079331 3R 20736509..20736672 450..613 820 100 Plus
3R 32079331 3R 20736984..20737132 811..959 689 97.3 Plus
3R 32079331 3R 20735697..20735824 17..144 640 100 Plus
3R 32079331 3R 20736339..20736451 339..451 565 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:04:03 has no hits.

BS10201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:31 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-PA 1..943 17..959 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:52 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10498-PB 1..943 17..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:22 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RA 70..1017 10..959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:35 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk2-RA 70..1017 10..959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:35 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20736985..20737132 812..959 97   Plus
3R 20735692..20735824 10..144 97 -> Plus
3R 20736091..20736286 145..340 100 -> Plus
3R 20736341..20736451 341..451 100 -> Plus
3R 20736511..20736672 452..613 100 -> Plus
3R 20736732..20736929 614..811 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:22 Download gff for BS10201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16561414..16561546 10..144 97 -> Plus
arm_3R 16561813..16562008 145..340 100 -> Plus
arm_3R 16562063..16562173 341..451 100 -> Plus
arm_3R 16562233..16562394 452..613 100 -> Plus
arm_3R 16562454..16562651 614..811 100 -> Plus
arm_3R 16562707..16562854 812..959 97   Plus

BS10201.complete Sequence

977 bp assembled on 2007-10-17

GenBank Submission: FJ636590

> BS10201.complete
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCGCAATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCAATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCTGAAAGCTTTCTAGACCAT

BS10201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-RC 945 CG10498-PC 1..945 17..961 4725 100 Plus
Cdk2-RB 945 CG10498-PB 1..945 17..961 4725 100 Plus
Cdk2-RA 945 CG10498-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-RC 2224 CG10498-RC 75..1019 17..961 4725 100 Plus
Cdk2-RB 1215 CG10498-RB 75..1019 17..961 4725 100 Plus
Cdk2-RA 1140 CG10498-RA 75..1019 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20736731..20736929 613..811 995 100 Plus
3R 32079331 3R 20736090..20736286 144..340 985 100 Plus
3R 32079331 3R 20736509..20736672 450..613 820 100 Plus
3R 32079331 3R 20736984..20737134 811..961 755 100 Plus
3R 32079331 3R 20735697..20735824 17..144 640 100 Plus
3R 32079331 3R 20736339..20736451 339..451 565 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:35 has no hits.

BS10201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:08 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RB 1..945 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:21 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RC 73..1029 10..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:20 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RA 75..1018 17..960 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:12 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RB 78..1021 17..960 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:40 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk2-RA 75..1018 17..960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:40 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20735697..20735824 17..144 100 -> Plus
3R 20736091..20736286 145..340 100 -> Plus
3R 20736341..20736451 341..451 100 -> Plus
3R 20736511..20736672 452..613 100 -> Plus
3R 20736732..20736929 614..811 100 -> Plus
3R 20736985..20737133 812..960 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:20 Download gff for BS10201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16561419..16561546 17..144 100 -> Plus
arm_3R 16561813..16562008 145..340 100 -> Plus
arm_3R 16562063..16562173 341..451 100 -> Plus
arm_3R 16562233..16562394 452..613 100 -> Plus
arm_3R 16562454..16562651 614..811 100 -> Plus
arm_3R 16562707..16562855 812..960 100   Plus

BS10201.pep Sequence

Translation from 16 to 960

> BS10201.pep
MTTILDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPS
TAIREISLLKNLKHPNVVQLFDVVISGNNLYMIFEYLNMDLKKLMDKKKD
VFTPQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVDTAGKIKLADFG
LARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSEMI
MRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTN
MPQPITEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNVQHVDHVALPV
DPNAGSASRLTRLV*

BS10201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-PC 314 CG10498-PC 1..314 1..314 1646 100 Plus
Cdk2-PB 314 CG10498-PB 1..314 1..314 1646 100 Plus
Cdk2-PA 314 CG10498-PA 1..314 1..314 1646 100 Plus
Cdk1-PA 297 CG5363-PA 1..291 5..291 913 59.5 Plus
Cdk5-PA 294 CG8203-PA 1..294 5..295 734 47.3 Plus