Clone BS10202 Report

Search the DGRC for BS10202

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG3107-RA
Protein status:BS10202.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10202.3prime Sequence

898 bp (834 high quality bases) assembled on 2006-04-19

> BS10202.3prime
ATGGTCTAGAAAGCTTTTAATTATTTATTATCCATTTGTGACTAGTTTCA
AGCTCCAAATTTGCATTGACTGGACCCAAAATGCATTTTCCATAATGCAT
GGACTCTTTTCCAAAATAATTTTCTATAGCGCATTGCAGATCATCAATAG
TTACAGAGAGCATTCGGGAGCGATAGCTCTCAAAATCCTCTTGTGACACT
TCATAAAGGAAATAATCGATGCCAATATTTCCAGGTGCTATTGGAGTGTC
TAATTGCTGCAACACACCAAGCTTCGACTCAAAAAGAGACTGTTGGTCAA
TTACATTTTGATTTGCACGTAACCATTTATAAGTTTCATCAAAAGCGTTA
AGCGTTTTAGTTGAATTTGGATCTCGATAACTATAAAAACTGAAAATCCC
GTCTGAGCTGATTTTCGCACCAGCTCCGTAAGCGCCATTCTTCTCGCGAA
TAACAGGCAATAGATATTTGGCTGATAGCAATTTTGCCAAAACTCGCAGT
GTTGGATGGTCTTGGTGGAGATATGGGACTGTGAACAAAGCTTTAGCACA
GTAATTAACTGGTATGTTCATCACGTATTGTTGACAGCTAGGGTCCAAAT
AATGGATATTTCGACTTGTTTGTGTTTTCCCAAATGTTGGCAGGCTCTCC
AAAAATTTTTCGTAATTACTTATAGCCGATGGCTCATAAGATTGTGTTGT
GTTAATGGCGCCACGCATATTATCCTTGTTAAAAACTTTTGATGCAATTG
TCGACAATTTATCACATATATCTACCGTGCTTGTAGAATGTACAAAATTT
TTCATAAAGTCTATATGATCTACCCCATATAGTAGCGATTTGAGTTTACC
AGCATCACACACTTGTGATGTTGCTCCCCACATAGCATATAAATGACC

BS10202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PB 3105 CG3107-RB 2224..3105 898..17 4385 99.8 Minus
CG3107-PA 3105 CG3107-RA 2224..3105 898..17 4385 99.8 Minus
CG3107-PC 3105 CG3107-RC 2224..3105 898..17 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 3048..3929 898..17 4395 99.9 Minus
CG3107-RC 3156 CG3107-RC 2238..3119 898..17 4395 99.9 Minus
CG3107-RA 3230 CG3107-RA 2312..3193 898..17 4395 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5094172..5095053 898..17 4395 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:39:11 has no hits.

BS10202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:32 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PB 2224..3105 17..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:54 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PC 2224..3105 17..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:19 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 2413..3300 11..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:26 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 2312..3199 11..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:26 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5094172..5095059 11..898 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:19 Download gff for BS10202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 981677..982564 11..898 99   Minus

BS10202.5prime Sequence

930 bp (795 high quality bases) assembled on 2006-04-19

> BS10202.5prime
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATNTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGA

BS10202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PB 3105 CG3107-RB 1..914 17..930 4551 99.8 Plus
CG3107-PA 3105 CG3107-RA 1..914 17..930 4551 99.8 Plus
CG3107-PC 3105 CG3107-RC 1..914 17..930 4551 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 824..1738 16..930 4564 99.9 Plus
CG3107-RC 3156 CG3107-RC 14..928 16..930 4564 99.9 Plus
CG3107-RA 3230 CG3107-RA 88..1002 16..930 4564 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5091898..5092476 16..594 2895 100 Plus
2R 25286936 2R 5092525..5092862 593..930 1679 99.7 Plus
Blast to na_te.dros performed on 2015-02-04 04:22:21 has no hits.

BS10202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:33 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PB 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:55 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PC 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:59 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 185..1102 10..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:00 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 84..1001 10..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:00 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5091894..5092476 10..594 99 -> Plus
2R 5092527..5092861 595..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:59 Download gff for BS10202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 979399..979981 10..594 99 -> Plus
arm_2R 980032..980366 595..929 99   Plus

BS10202.complete Sequence

3137 bp assembled on 2007-11-30

GenBank Submission: FJ636591

> BS10202.complete
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATTTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGACGAGGAGTATTTATCAGATC
AAAGCTGGGTTGACAACTCTTACAGTTTAATACGTCAGCAAGAGCGTTGG
ACTCAGCCTCGTCTTGTACATATATCCAGTAGACTAGATAACATGGGTAC
AACAATTGATCGACAGAACCAAATTGCTATTGCACTGCTGATGTGTGATG
CAACCAATATACAAGAAAGTTTTGAATTACACGTGCTATCTGAGGTACTT
ATTCGTGGGCCTAACTCCCCTTTTTACAAAAACCTTATAGAACCAAATTT
TTCCGGTGGATACAATCAAACCACTGGATATTCATCGGATACTAAGGACA
CAACCTTCGTCGTTGGATTACAAGACCTTCGAGTTGAAGACTTCAAAAAA
TGCATTGAAATTTTTGACAAAACCATTATTAATTCTATGAATGACGGGTT
TGATTCCCAGCATGTTGAAAGTGTTCTGCACAATCTTGAGTTGTCTTTAA
AGCACCAGAATCCGAACTTCGGAAATACTTTGCTTTTTAATTCCACAGCA
TTATGGAATCATGATGGCGATGTAGTCAGTAATCTCCGCGTATCAGATAT
GATATCAGGGCTTCGGGAAAGCATAAGCCAGAATAAAAAATATTTCCAAG
AGAAAATAGAGAAATATTTCGCCAATAACAATCATAGACTAACATTAACT
ATGTCACCTGATGAGGCATATGAGGATAAATTCAAACAGGCCGAGTTGGA
GTTGGTAGAACAAAAAGTAAAACTTTTGGATGAAGTTAAGATTGAAAAAA
TATATGAGAGAGGATTAATATTGGATTCATATCAGAAGGCTGAGTCAAAT
ACTGATCTTTTACCTTGTCTGACAATGAATGATGTAAGAGATCCACCAAA
ATGGCCTAAGCTATTCATACAAAATGTTCAAAATGTTCGGACCCAGATTT
GCAAGGTTCCGACCAATGAAATTACTTATTTTAAGTGCATGTTTAATATA
ACAGGACTAAGTCATGAAGAAACTCAGCTTATGCCGCTTTTTTGCAATGT
TATTAGTGCAATGGGCACCACAAACTATAATTATCGGGAGTTCGATAAGC
ACATCCTTTTAAAAACCGGTGGATTTGATTTTAAGTTACACTTAATTGAA
GATGTTAGGGATTCAAAAAGTTACAGTCTAAGCGTAATGATAAACACACA
TGCACTTAATAACAATGTTCCAGAGATGTTTGCCTTGTGCCAAGAGTTGA
TTAAAAATGTTAGGTTTGATGACTCGGAGCGACTTAAAATGCTTATAGAA
AATTATATATCATATATATCTGTGGGAGTGGCTAGTTCTGGTCATTTATA
TGCTATGTTGGGAGCAACATCACAAGTGTGTGATGCTGGTAAACTCAAAT
CGCTACTATATGGGGTAGATCATATAGACTTTATGAAAAATTTTGTACAT
TCTACAAGCACGGTAGATATATGTGATAAATTGTCGACAATTGCATCAAA
AGTTTTTAACAAGGATAATATGCGTGGCGCCATTAACACAACACAATCTT
ATGAGCCATCGGCTATAAGTAATTACGAAAAATTTTTGGAGAGCCTGCCA
ACATTTGGGAAAACACAAACAAGTCGAAATATCCATTATTTGGACCCTAG
CTGTCAACAATACGTGATGAACATACCAGTTAATTACTGTGCTAAAGCTT
TGTTCACAGTCCCATATCTCCACCAAGACCATCCAACACTGCGAGTTTTG
GCAAAATTGCTATCAGCCAAATATCTATTGCCTGTTATTCGCGAGAAGAA
TGGCGCTTACGGAGCTGGTGCGAAAATCAGCTCAGACGGGATTTTCAGTT
TTTATAGTTATCGAGATCCAAATTCAACTAAAACGCTTAACGCTTTTGAT
GAAACTTATAAATGGTTACGTGCAAATCAAAATGTAATTGACCAACAGTC
TCTTTTTGAGTCGAAGCTTGGTGTGTTGCAGCAATTAGACACTCCAATAG
CACCTGGAAATATTGGCATCGATTATTTCCTTTATGAAGTGTCACAAGAG
GATTTTGAGAGCTATCGCTCCCGAATGCTCTCTGTAACTATTGATGATCT
GCAATGCGCTATAGAAAATTATTTTGGAAAAGAGTCCATGCATTATGGAA
AATGCATTTTGGGTCCAGTCAATGCAAATTTGGAGCTTGAAACTAGTCAC
AAATGGATAATAAATAATTAAAAGCTTTCTAGACCAT

BS10202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3105 CG3107-PD 1..3105 17..3121 15525 100 Plus
CG3107-RC 3105 CG3107-PC 1..3105 17..3121 15525 100 Plus
CG3107-RA 3105 CG3107-PA 1..3105 17..3121 15525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 824..3929 16..3121 15530 100 Plus
CG3107-RC 3156 CG3107-RC 14..3119 16..3121 15530 100 Plus
CG3107-RA 3230 CG3107-RA 88..3193 16..3121 15530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5092525..5095053 593..3121 12645 100 Plus
2R 25286936 2R 5091898..5092476 16..594 2895 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:32:11 has no hits.

BS10202.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:09 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 1..3105 17..3121 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:23 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 25..3140 10..3127 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:05 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 195..3292 22..3119 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:32 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 35..3132 22..3119 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:39 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 94..3191 22..3119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:39 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5091904..5092476 22..594 100 -> Plus
2R 5092527..5095051 595..3119 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:05 Download gff for BS10202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 979409..979981 22..594 100 -> Plus
arm_2R 980032..982556 595..3119 100   Plus

BS10202.pep Sequence

Translation from 16 to 3120

> BS10202.pep
MLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNTKQPKSPRQF
GCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTFRYERTGTEL
WHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKYPVRDPFFKM
LNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAVFRPNLAYFD
FLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVFSQNLLNNIF
PDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYSYGLFDASKT
LALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLDNMGTTIDRQ
NQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLIEPNFSGGYN
QTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSMNDGFDSQHV
ESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLRVSDMISGLR
ESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQAELELVEQK
VKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVRDPPKWPKLF
IQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPLFCNVISAMG
TTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVMINTHALNNN
VPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASSGHLYAMLGA
TSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLSTIASKVFNKD
NMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHYLDPSCQQYV
MNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVIREKNGAYGA
GAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVIDQQSLFESK
LGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVTIDDLQCAIE
NYFGKESMHYGKCILGPVNANLELETSHKWIINN*

BS10202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PD 1034 CG3107-PD 1..1034 1..1034 5467 100 Plus
CG3107-PC 1034 CG3107-PC 1..1034 1..1034 5467 100 Plus
CG3107-PA 1034 CG3107-PA 1..1034 1..1034 5467 100 Plus
CG3107-PB 1034 CG3107-PB 1..1034 1..1034 5467 100 Plus