Clone Sequence Records
BS10202.3prime Sequence
898 bp (834 high quality bases) assembled on 2006-04-19
> BS10202.3prime
ATGGTCTAGAAAGCTTTTAATTATTTATTATCCATTTGTGACTAGTTTCA
AGCTCCAAATTTGCATTGACTGGACCCAAAATGCATTTTCCATAATGCAT
GGACTCTTTTCCAAAATAATTTTCTATAGCGCATTGCAGATCATCAATAG
TTACAGAGAGCATTCGGGAGCGATAGCTCTCAAAATCCTCTTGTGACACT
TCATAAAGGAAATAATCGATGCCAATATTTCCAGGTGCTATTGGAGTGTC
TAATTGCTGCAACACACCAAGCTTCGACTCAAAAAGAGACTGTTGGTCAA
TTACATTTTGATTTGCACGTAACCATTTATAAGTTTCATCAAAAGCGTTA
AGCGTTTTAGTTGAATTTGGATCTCGATAACTATAAAAACTGAAAATCCC
GTCTGAGCTGATTTTCGCACCAGCTCCGTAAGCGCCATTCTTCTCGCGAA
TAACAGGCAATAGATATTTGGCTGATAGCAATTTTGCCAAAACTCGCAGT
GTTGGATGGTCTTGGTGGAGATATGGGACTGTGAACAAAGCTTTAGCACA
GTAATTAACTGGTATGTTCATCACGTATTGTTGACAGCTAGGGTCCAAAT
AATGGATATTTCGACTTGTTTGTGTTTTCCCAAATGTTGGCAGGCTCTCC
AAAAATTTTTCGTAATTACTTATAGCCGATGGCTCATAAGATTGTGTTGT
GTTAATGGCGCCACGCATATTATCCTTGTTAAAAACTTTTGATGCAATTG
TCGACAATTTATCACATATATCTACCGTGCTTGTAGAATGTACAAAATTT
TTCATAAAGTCTATATGATCTACCCCATATAGTAGCGATTTGAGTTTACC
AGCATCACACACTTGTGATGTTGCTCCCCACATAGCATATAAATGACC
BS10202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PB | 3105 | CG3107-RB | 2224..3105 | 898..17 | 4385 | 99.8 | Minus |
CG3107-PA | 3105 | CG3107-RA | 2224..3105 | 898..17 | 4385 | 99.8 | Minus |
CG3107-PC | 3105 | CG3107-RC | 2224..3105 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 3048..3929 | 898..17 | 4395 | 99.9 | Minus |
CG3107-RC | 3156 | CG3107-RC | 2238..3119 | 898..17 | 4395 | 99.9 | Minus |
CG3107-RA | 3230 | CG3107-RA | 2312..3193 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5094172..5095053 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:39:11 has no hits.
BS10202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:32 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PB | 2224..3105 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:54 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PC | 2224..3105 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:19 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 2413..3300 | 11..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:26 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 2312..3199 | 11..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:26 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5094172..5095059 | 11..898 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:19 Download gff for
BS10202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 981677..982564 | 11..898 | 99 | | Minus |
BS10202.5prime Sequence
930 bp (795 high quality bases) assembled on 2006-04-19
> BS10202.5prime
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATNTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGA
BS10202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PB | 3105 | CG3107-RB | 1..914 | 17..930 | 4551 | 99.8 | Plus |
CG3107-PA | 3105 | CG3107-RA | 1..914 | 17..930 | 4551 | 99.8 | Plus |
CG3107-PC | 3105 | CG3107-RC | 1..914 | 17..930 | 4551 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 824..1738 | 16..930 | 4564 | 99.9 | Plus |
CG3107-RC | 3156 | CG3107-RC | 14..928 | 16..930 | 4564 | 99.9 | Plus |
CG3107-RA | 3230 | CG3107-RA | 88..1002 | 16..930 | 4564 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5091898..5092476 | 16..594 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 5092525..5092862 | 593..930 | 1679 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:22:21 has no hits.
BS10202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:33 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PB | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:55 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PC | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:59 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 185..1102 | 10..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:00 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 84..1001 | 10..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:00 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5091894..5092476 | 10..594 | 99 | -> | Plus |
2R | 5092527..5092861 | 595..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:59 Download gff for
BS10202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 979399..979981 | 10..594 | 99 | -> | Plus |
arm_2R | 980032..980366 | 595..929 | 99 | | Plus |
BS10202.complete Sequence
3137 bp assembled on 2007-11-30
GenBank Submission: FJ636591
> BS10202.complete
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATTTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGACGAGGAGTATTTATCAGATC
AAAGCTGGGTTGACAACTCTTACAGTTTAATACGTCAGCAAGAGCGTTGG
ACTCAGCCTCGTCTTGTACATATATCCAGTAGACTAGATAACATGGGTAC
AACAATTGATCGACAGAACCAAATTGCTATTGCACTGCTGATGTGTGATG
CAACCAATATACAAGAAAGTTTTGAATTACACGTGCTATCTGAGGTACTT
ATTCGTGGGCCTAACTCCCCTTTTTACAAAAACCTTATAGAACCAAATTT
TTCCGGTGGATACAATCAAACCACTGGATATTCATCGGATACTAAGGACA
CAACCTTCGTCGTTGGATTACAAGACCTTCGAGTTGAAGACTTCAAAAAA
TGCATTGAAATTTTTGACAAAACCATTATTAATTCTATGAATGACGGGTT
TGATTCCCAGCATGTTGAAAGTGTTCTGCACAATCTTGAGTTGTCTTTAA
AGCACCAGAATCCGAACTTCGGAAATACTTTGCTTTTTAATTCCACAGCA
TTATGGAATCATGATGGCGATGTAGTCAGTAATCTCCGCGTATCAGATAT
GATATCAGGGCTTCGGGAAAGCATAAGCCAGAATAAAAAATATTTCCAAG
AGAAAATAGAGAAATATTTCGCCAATAACAATCATAGACTAACATTAACT
ATGTCACCTGATGAGGCATATGAGGATAAATTCAAACAGGCCGAGTTGGA
GTTGGTAGAACAAAAAGTAAAACTTTTGGATGAAGTTAAGATTGAAAAAA
TATATGAGAGAGGATTAATATTGGATTCATATCAGAAGGCTGAGTCAAAT
ACTGATCTTTTACCTTGTCTGACAATGAATGATGTAAGAGATCCACCAAA
ATGGCCTAAGCTATTCATACAAAATGTTCAAAATGTTCGGACCCAGATTT
GCAAGGTTCCGACCAATGAAATTACTTATTTTAAGTGCATGTTTAATATA
ACAGGACTAAGTCATGAAGAAACTCAGCTTATGCCGCTTTTTTGCAATGT
TATTAGTGCAATGGGCACCACAAACTATAATTATCGGGAGTTCGATAAGC
ACATCCTTTTAAAAACCGGTGGATTTGATTTTAAGTTACACTTAATTGAA
GATGTTAGGGATTCAAAAAGTTACAGTCTAAGCGTAATGATAAACACACA
TGCACTTAATAACAATGTTCCAGAGATGTTTGCCTTGTGCCAAGAGTTGA
TTAAAAATGTTAGGTTTGATGACTCGGAGCGACTTAAAATGCTTATAGAA
AATTATATATCATATATATCTGTGGGAGTGGCTAGTTCTGGTCATTTATA
TGCTATGTTGGGAGCAACATCACAAGTGTGTGATGCTGGTAAACTCAAAT
CGCTACTATATGGGGTAGATCATATAGACTTTATGAAAAATTTTGTACAT
TCTACAAGCACGGTAGATATATGTGATAAATTGTCGACAATTGCATCAAA
AGTTTTTAACAAGGATAATATGCGTGGCGCCATTAACACAACACAATCTT
ATGAGCCATCGGCTATAAGTAATTACGAAAAATTTTTGGAGAGCCTGCCA
ACATTTGGGAAAACACAAACAAGTCGAAATATCCATTATTTGGACCCTAG
CTGTCAACAATACGTGATGAACATACCAGTTAATTACTGTGCTAAAGCTT
TGTTCACAGTCCCATATCTCCACCAAGACCATCCAACACTGCGAGTTTTG
GCAAAATTGCTATCAGCCAAATATCTATTGCCTGTTATTCGCGAGAAGAA
TGGCGCTTACGGAGCTGGTGCGAAAATCAGCTCAGACGGGATTTTCAGTT
TTTATAGTTATCGAGATCCAAATTCAACTAAAACGCTTAACGCTTTTGAT
GAAACTTATAAATGGTTACGTGCAAATCAAAATGTAATTGACCAACAGTC
TCTTTTTGAGTCGAAGCTTGGTGTGTTGCAGCAATTAGACACTCCAATAG
CACCTGGAAATATTGGCATCGATTATTTCCTTTATGAAGTGTCACAAGAG
GATTTTGAGAGCTATCGCTCCCGAATGCTCTCTGTAACTATTGATGATCT
GCAATGCGCTATAGAAAATTATTTTGGAAAAGAGTCCATGCATTATGGAA
AATGCATTTTGGGTCCAGTCAATGCAAATTTGGAGCTTGAAACTAGTCAC
AAATGGATAATAAATAATTAAAAGCTTTCTAGACCAT
BS10202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3105 | CG3107-PD | 1..3105 | 17..3121 | 15525 | 100 | Plus |
CG3107-RC | 3105 | CG3107-PC | 1..3105 | 17..3121 | 15525 | 100 | Plus |
CG3107-RA | 3105 | CG3107-PA | 1..3105 | 17..3121 | 15525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 824..3929 | 16..3121 | 15530 | 100 | Plus |
CG3107-RC | 3156 | CG3107-RC | 14..3119 | 16..3121 | 15530 | 100 | Plus |
CG3107-RA | 3230 | CG3107-RA | 88..3193 | 16..3121 | 15530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5092525..5095053 | 593..3121 | 12645 | 100 | Plus |
2R | 25286936 | 2R | 5091898..5092476 | 16..594 | 2895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:11 has no hits.
BS10202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:09 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 1..3105 | 17..3121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:23 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 25..3140 | 10..3127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:05 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 195..3292 | 22..3119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:32 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 35..3132 | 22..3119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:39 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 94..3191 | 22..3119 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:39 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5091904..5092476 | 22..594 | 100 | -> | Plus |
2R | 5092527..5095051 | 595..3119 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:05 Download gff for
BS10202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 979409..979981 | 22..594 | 100 | -> | Plus |
arm_2R | 980032..982556 | 595..3119 | 100 | | Plus |
BS10202.pep Sequence
Translation from 16 to 3120
> BS10202.pep
MLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNTKQPKSPRQF
GCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTFRYERTGTEL
WHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKYPVRDPFFKM
LNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAVFRPNLAYFD
FLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVFSQNLLNNIF
PDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYSYGLFDASKT
LALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLDNMGTTIDRQ
NQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLIEPNFSGGYN
QTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSMNDGFDSQHV
ESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLRVSDMISGLR
ESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQAELELVEQK
VKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVRDPPKWPKLF
IQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPLFCNVISAMG
TTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVMINTHALNNN
VPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASSGHLYAMLGA
TSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLSTIASKVFNKD
NMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHYLDPSCQQYV
MNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVIREKNGAYGA
GAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVIDQQSLFESK
LGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVTIDDLQCAIE
NYFGKESMHYGKCILGPVNANLELETSHKWIINN*
BS10202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PD | 1034 | CG3107-PD | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PC | 1034 | CG3107-PC | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PA | 1034 | CG3107-PA | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PB | 1034 | CG3107-PB | 1..1034 | 1..1034 | 5467 | 100 | Plus |