Clone Sequence Records
BS10204.3prime Sequence
962 bp (784 high quality bases) assembled on 2006-04-19
> BS10204.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGTAGCTGCACGAAATAACAAAAACA
GGTCCCTTTTCAAGGGGCGTGTTGCGCGACACGTATTTGGTGAACTTGGT
GGTGCCCTCGCACCGGTATACTATGTTCAGGGCGTTGTCCACCGGCGTGA
TAGTAAGCAGAACGGAATCGTCCTCTTCCTCGTCATCGTAGTCCGATCGC
CTTCCGTCCGTCGGTGCTTTTGCTGTTGGCATTTCGGCGTCGGGTGCGAG
GTATGTGATCACCGCTGCTCCTTCTGCCGCGTTCAGGTAGTAAACCAGGT
CCAAAGTGTTCTCCTCGCTGGTCAAACCGTCGCCCAGCACTGTGTAGTTG
CCGTGGGACCAGCGCTGCAGTTCCACGCTGCATGTTGGACTTTCGGCATC
GGTGCCTGCCAAATCCAGATCGGTGAAATCTCGCAGCAAATCAAACATGG
CGTGGCTACGGAACAGTTGCAGTAGTTCCAGTATGGTGCCTCTGGCTGTT
GTCAAATCCAGCACTTCATAGTTGTGTGCGTTTGCGGGTCCCTGTCTTCG
CCACTTCAAGGTATCCGAATCGGCCAACAGCTGCGACCGGGCCAATTCGA
ATTTCTCTCGCTTGAAGAACTCGTATAAACAAATCTCGGAGTTTTCTTCG
ATCCGCTTTTGGATGCTCCGGCGGGTGGCCCCCTTTAGATACACGTTGTT
TAGAAACAGGCCAAGCGGTGGCCTATTAAGGCCATCAGGTTGCAGGTAAT
TCAGGCGGGGAAAGGCGCGCAGGGAGTCGGCCACGAAGGCCTCATTGGTA
TCGCCGTGGAACCATCCGTTTATGGTAAGACGCGGGTAGTCGAATGTAGT
AACCTCGCCTACTTGGTGGAAGGAGCGCGAGCCCACCTTGAAAAAGCAAA
CTGGTTGTCTTTGGGGGCGATCTTCGCTGCACTGGAAACTGTGGAAAGCA
CTGATCGTCGCT
BS10204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31120-PA | 1611 | CG31120-RA | 736..1611 | 892..17 | 4380 | 100 | Minus |
| CG31120-PA | 1611 | CG31120-RA | 664..703 | 962..923 | 200 | 100 | Minus |
| CG31120-PA | 1611 | CG31120-RA | 703..731 | 924..896 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 765..1712 | 962..17 | 4675 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24915954..24916901 | 17..962 | 4625 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:51:13 has no hits.
BS10204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:37 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PA | 664..1611 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:50:59 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PA | 664..1611 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:26:02 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 765..1712 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:01 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 765..1712 | 17..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:01 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24915954..24916901 | 17..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:26:02 Download gff for
BS10204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20741676..20742623 | 17..962 | 99 | | Plus |
BS10204.5prime Sequence
964 bp (819 high quality bases) assembled on 2006-04-19
> BS10204.5prime
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATGGTCGTGCAGAGCAGGAGGATTCCGCA
GATCAGGTGGGCGAGCCGCACAGGAAGCTTTTGCGCCTGGGCGACATCCT
TGAAACGAACGAAGTGCTCCTGAACGAGGCGTATCAGCAACCGGAACTTA
CCAAGTGGCTCCAAACAGCCTGGACGGAGGAGAAGAGCCAAGGGACCAAG
GAGACGCAAACCGGTGCTCAGGTCTTCTCGGATCCCTTTCAAATCTGCCT
TCTGCCCGGCATGCTGGAGAAGGGCCAAAGCCAGGCGCTGGTCGCCGAGA
TCATCCAGAAGGTGCAGTGGTCGCGCAAACAGATGGATTTGTATGAGTTC
TACCAGAGCGCCGACCTCTCCAACATGCCCGCTTGCCGACTGTTGACCAA
CTTCCTGCAGGTGCTGCGCAAACAAGTGCGTCCCTGGCTGGAGAAGGTTA
CCAACCTCAAGCTGGACTATGTGTCCGCCTCCTGCAGCATGTACACCTGC
GGCGACTATCTGCTCGTGCACGACGATCTGCTTAAGGACCGACAAGTGGC
CTTCATTTACTATCTATCGCCTTGGGAAGGAGCGGAGGAATGGACGGATG
AGCAGGGCGGATGCCTAGAGATCTTCGGTAGCGACGATCAGTGCTTTCCA
CAGTTTCCAGTGCAGCGAAAGATCGCCCCCAAAGACAACCAGTTTGCCTT
CTTCAAGGTGGGCTCGCGCTCCTTCCACCAAGTAGGCGAGGTTACTACAT
TCGACTACCCGCGTCTTACCATAAACGGATGGTTCCACGGGCGATACCAT
GAGGCCTTCGTGGCCGACTCCCTGCGCGCCTTTCCCCGCCTGAATTACCT
GCAACCTGATGGGCTTAATAGGCCACCGCTTGGCCTGTTTCTAAACAACG
TGTATCTAAAGGGG
BS10204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31120-PA | 1611 | CG31120-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
| CG31120-PA | 1611 | CG31120-RA | 833..948 | 849..964 | 555 | 99.1 | Plus |
| CG31120-PB | 1611 | CG31120-RB | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 101..1049 | 16..964 | 4685 | 99.7 | Plus |
| PIG-S-RC | 1764 | CG44255-RC | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24916617..24917511 | 964..70 | 4365 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24917709..24917764 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:40:16 has no hits.
BS10204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:38 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:01 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:47 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1049 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:24 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1049 | 9..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:24 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24916617..24917509 | 72..964 | 99 | <- | Minus |
| 3R | 24917709..24917770 | 9..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:47 Download gff for
BS10204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20742339..20743231 | 72..964 | 99 | <- | Minus |
| arm_3R | 20743431..20743492 | 9..71 | 95 | | Minus |
BS10204.complete Sequence
1643 bp (1643 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636593
> BS10204.complete
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATGGTCGTGCAGAGCAGGAGGATTCCGCA
GATCAGGTGGGCGAGCCGCACAGGAAGCTTTTGCGCCTGGGCGACATCCT
TGAAACGAACGAAGTGCTCCTGAACGAGGCGTATCAGCAACCGGAACTTA
CCAAGTGGCTCCAAACAGCCTGGACGGAGGAGAAGAGCCAAGGGACCAAG
GAGACGCAAACCGGTGCTCAGGTCTTCTCGGATCCCTTTCAAATCTGCCT
TCTGCCCGGCATGCTGGAGAAGGGCCAAAGCCAGGCGCTGGTCGCCGAGA
TCATCCAGAAGGTGCAGTGGTCGCGCAAACAGATGGATTTGTATGAGTTC
TACCAGAGCGCCGACCTCTCCAACATGCCCGCTTGCCGACTGTTGACCAA
CTTCCTGCAGGTGCTGCGCAAACAAGTGCGTCCCTGGCTGGAGAAGGTTA
CCAACCTCAAGCTGGACTATGTGTCCGCCTCCTGCAGCATGTACACCTGC
GGCGACTATCTGCTCGTGCACGACGATCTGCTTAAGGACCGACAAGTGGC
CTTCATTTACTATCTATCGCCTTGGGAAGGAGCGGAGGAATGGACGGATG
AGCAGGGCGGATGCCTAGAGATCTTCGGTAGCGACGATCAGTGCTTTCCA
CAGTTTCCAGTGCAGCGAAAGATCGCCCCCAAAGACAACCAGTTTGCCTT
CTTCAAGGTGGGCTCGCGCTCCTTCCACCAAGTAGGCGAGGTTACTACAT
TCGACTACCCGCGTCTTACCATAAACGGATGGTTCCACGGCGATACCAAT
GAGGCCTTCGTGGCCGACTCCCTGCGCGCCTTTCCCCGCCTGAATTACCT
GCAACCTGATGGCCTTAATAGGCCACCGCTTGGCCTGTTTCTAAACAACG
TGTATCTAAAGGGGGCCACCCGCCGGAGCATCCAAAAGCGGATCGAAGAA
AACTCCGAGATTTGTTTATACGAGTTCTTCAAGCGAGAGAAATTCGAATT
GGCCCGGTCGCAGCTGTTGGCCGATTCGGATACCTTGAAGTGGCGAAGAC
AGGGACCCGCAAACGCACACAACTATGAAGTGCTGGATTTGACAACAGCC
AGAGGCACCATACTGGAACTACTGCAACTGTTCCGTAGCCACGCCATGTT
TGATTTGCTGCGAGATTTCACCGATCTGGATTTGGCAGGCACCGATGCCG
AAAGTCCAACATGCAGCGTGGAACTGCAGCGCTGGTCCCACGGCAACTAC
ACAGTGCTGGGCGACGGTTTGACCAGCGAGGAGAACACTTTGGACCTGGT
TTACTACCTGAACGCGGCAGAAGGAGCAGCGGTGATCACATACCTCGCAC
CCGACGCCGAAATGCCAACAGCAAAAGCACCGACGGACGGAAGGCGATCG
GACTACGATGACGAGGAAGAGGACGATTCCGTTCTGCTTACTATCACGCC
GGTGGACAACGCCCTGAACATAGTATACCGGTGCGAGGGCACCACCAAGT
TCACCAAATACGTGTCGCGCAACACGCCCCTTGAAAAGGGACCTGTTTTT
GTTATTTCGTGCAGCTACAAGGAGTAGAAGCTTTCTAGACCAT
BS10204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1611 | CG44254-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| PIG-S-RC | 1611 | CG44255-PC | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 101..1712 | 16..1627 | 8060 | 100 | Plus |
| PIG-S-RC | 1764 | CG44255-RC | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24915954..24917511 | 1627..70 | 7790 | 100 | Minus |
| 3R | 32079331 | 3R | 24917709..24917764 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:10 has no hits.
BS10204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:27 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RA | 1..1611 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:57 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RA | 73..1690 | 9..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:18 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 102..1712 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:27 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RA | 73..1690 | 9..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:46 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 102..1712 | 17..1627 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:46 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24915954..24917509 | 72..1627 | 100 | <- | Minus |
| 3R | 24917709..24917763 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:18 Download gff for
BS10204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20741676..20743231 | 72..1627 | 100 | <- | Minus |
| arm_3R | 20743431..20743485 | 17..71 | 100 | | Minus |
BS10204.pep Sequence
Translation from 16 to 1626
> BS10204.pep
METSSSSPVKPRRKDKDEDGRAEQEDSADQVGEPHRKLLRLGDILETNEV
LLNEAYQQPELTKWLQTAWTEEKSQGTKETQTGAQVFSDPFQICLLPGML
EKGQSQALVAEIIQKVQWSRKQMDLYEFYQSADLSNMPACRLLTNFLQVL
RKQVRPWLEKVTNLKLDYVSASCSMYTCGDYLLVHDDLLKDRQVAFIYYL
SPWEGAEEWTDEQGGCLEIFGSDDQCFPQFPVQRKIAPKDNQFAFFKVGS
RSFHQVGEVTTFDYPRLTINGWFHGDTNEAFVADSLRAFPRLNYLQPDGL
NRPPLGLFLNNVYLKGATRRSIQKRIEENSEICLYEFFKREKFELARSQL
LADSDTLKWRRQGPANAHNYEVLDLTTARGTILELLQLFRSHAMFDLLRD
FTDLDLAGTDAESPTCSVELQRWSHGNYTVLGDGLTSEENTLDLVYYLNA
AEGAAVITYLAPDAEMPTAKAPTDGRRSDYDDEEEDDSVLLTITPVDNAL
NIVYRCEGTTKFTKYVSRNTPLEKGPVFVISCSYKE*
BS10204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-PA | 536 | CG44254-PA | 1..536 | 1..536 | 2827 | 100 | Plus |
