Clone Sequence Records
BS10205.3prime Sequence
864 bp (856 high quality bases) assembled on 2006-04-19
> BS10205.3prime
ATGGTCTAGAAAGCTTTTACAGCTCGTCGTGCTGCTGCTCCTCCTCCTCA
TCATCGGCGTTGCCGCTCTCCTGGCTGCCGGTGGCGGTCTCCTCGGCATC
ATCCTCCTCCTCCTCGTCGAACTCCACCTGCTCGTCTTGGGAGACACCCA
AGGTCTGGCGCATCATCTGCTCAATACTGTCGGCGAACTGCGAAGTCTCC
TGGAGCATGTATCCAGACCGCAGGGTGGCGGTGCGGAACATCATCACAGC
CATGTCCTTGGCGGTGTCATCGGCCTCGTCGGCCTCCACGCGGCGCAGCA
GCTCGCGCATCAGCGGATGCCTGGGATTGATCTCGAGCGTTTTCTTCTGG
TTGAGGTAGTAGGTGCGCTGAGGATCGTCGGACTTCTGGTGGGCGTTGGA
CATGGCCAGACGCTCCATGTTGCCGGTCCAGCCGAAGACGCCGGCCACGA
GGGCGCATGGCGAGTTGCTCAGACGCTCGGAAACCTGGGCCTTGGAGATC
TGATCCTTGAGTGCCACATCGTTCAGCCACTTGACCAGCGGCTCGAAGGT
GCTCTTTAGCGACTCGAAGTTCTTCTTGCTCTTCTCGGACTCGTTCAGCT
GGAATCCCTCCTTGGCCACGTTCTGGAACTTCTTGCCATCGAACTCGGGC
AGCGCGGAGATGCAGTACTCGTCGACGGCCTCCACCAGATACAGCACCTC
GTATCCCTTGCTCAGCAGACGCTCGACGAACGGCGACTTCTCGACCTCAG
CGCGGTTGGCACCAGCGATGTAGTAGATGTGCTCCTGCTTGGCCTTCATG
CGCTCCTTGTACTCCGCCAGCGAGGTGACGCCCTTGCCGTTGGAGGTCTG
GAAGCGGAGCAGCT
BS10205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5520-PA | 2364 | Gp93-RA | 1517..2364 | 864..17 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp93-RA | 2841 | CG5520-RA | 1668..2516 | 864..16 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27950978..27951826 | 864..16 | 4245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:53:07 has no hits.
BS10205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:39 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-PA | 1517..2364 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:03 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5520-PA | 1517..2364 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:26:04 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 1668..2521 | 8..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:25 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 1668..2521 | 8..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:25 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27950978..27951831 | 8..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:26:04 Download gff for
BS10205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23776700..23777553 | 8..864 | 99 | | Minus |
BS10205.5prime Sequence
911 bp (875 high quality bases) assembled on 2006-04-19
> BS10205.5prime
GAAGTTATCAGTCGACATGAAGTACTTTTTGCTGGTGGGCCTGCTGCTCC
TAGCAGGCATCAATCAAATAGCCGCCGATGACGAGGCCGCCACAACGGAG
ACCATCGACCTTGATCTGGGCTCCTTCAAGGAGGGCTCCCGCACCGATGC
CGAGACCCTGAAGCGCGAGGAGGAGGCCATCCAGCTGGACGGCCTGAACG
TGGCGCAGCTGAAGGAAATTCGCGAGAAGGCGAAGAAGTTTACTTTCCAA
ACGGAGGTCAACCGCATGATGAAGCTGATTATCAACTCGCTTTACCGCAA
CAAGGAGATCTTCCTGCGTGAATTGATATCCAACGCCTCCGATGCCATCG
ACAAGATCCGCCTATTGGCTCTGTCCAACAGCAAGGAGCTGGAAACGAAT
CCGGAGCTGCACATCCGCATTAAGGCCGACAAGGAGAACAAGGCGTTGCA
CATCATGGACTCGGGTATCGGCATGACTCACCAGGATCTGATCAATAACC
TGGGTACAATTGCCAAGTCCGGCACTGCCGATTTTCTGGCCAAGATGCAG
GATCCCAGCAAGTCGGAGGGACTCGATATGAACGACATGATTGGACAGTT
CGGTGTGGGCTTTTACTCCGCTTTCTTGGTCGCCGATCGTGTAGTGGTGA
CCACCAAGCACAACGACGACAAACAGTACATCTGGGAGTCGGATGCCAAC
AGCTTCAGCATCACCGAGGATCCCCGTGGCGATACTCTGAAGCGAGGATC
CGTGATCTCGCTGTATCTGAAGGAAGAAGCCCAGGACTTCCTGGAGGAGG
ACACCGTGCGCGAGCTCATCCGCAAGTACTCGCAGTTCATCAACTTTCCC
ATCCGCATGTGGTCCAGCAAGACCGTCGAGGAGGAGGTGCCCGTGGAGGA
GGAGGGCCAGC
BS10205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5520-PA | 2364 | Gp93-RA | 1..889 | 17..905 | 4420 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp93-RA | 2841 | CG5520-RA | 151..1040 | 16..905 | 4435 | 99.9 | Plus |
| Hsp83-RB | 2960 | CG1242-RB | 481..543 | 299..361 | 195 | 87.3 | Plus |
| Hsp83-RA | 2713 | CG1242-RA | 234..296 | 299..361 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27949340..27950017 | 228..905 | 3375 | 99.9 | Plus |
| 3R | 32079331 | 3R | 27948982..27949073 | 55..146 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 27949170..27949254 | 146..230 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 27948861..27948902 | 16..57 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 3194580..3194642 | 299..361 | 195 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:41:12 has no hits.
BS10205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:40 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:04 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5520-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:14 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 144..1046 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:49 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 144..1046 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:49 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27948854..27948901 | 9..56 | 91 | -> | Plus |
| 3R | 27948984..27949073 | 57..146 | 100 | -> | Plus |
| 3R | 27949171..27949253 | 147..229 | 100 | -> | Plus |
| 3R | 27949342..27950023 | 230..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:14 Download gff for
BS10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23774576..23774623 | 9..56 | 91 | -> | Plus |
| arm_3R | 23774706..23774795 | 57..146 | 100 | -> | Plus |
| arm_3R | 23774893..23774975 | 147..229 | 100 | -> | Plus |
| arm_3R | 23775064..23775745 | 230..911 | 99 | | Plus |
BS10205.complete Sequence
2396 bp assembled on 2007-11-30
GenBank Submission: FJ636594
> BS10205.complete
GAAGTTATCAGTCGACATGAAGTACTTTTTGCTGGTGGGCCTGCTGCTCC
TAGCAGGCATCAATCAAATAGCCGCCGATGACGAGGCCGCCACAACGGAG
ACCATCGACCTTGATCTGGGCTCCTTCAAGGAGGGCTCCCGCACCGATGC
CGAGACCCTGAAGCGCGAGGAGGAGGCCATCCAGCTGGACGGCCTGAACG
TGGCGCAGCTGAAGGAAATTCGCGAGAAGGCGAAGAAGTTTACTTTCCAA
ACGGAGGTCAACCGCATGATGAAGCTGATTATCAACTCGCTTTACCGCAA
CAAGGAGATCTTCCTGCGTGAATTGATATCCAACGCCTCCGATGCCATCG
ACAAGATCCGCCTATTGGCTCTGTCCAACAGCAAGGAGCTGGAAACGAAT
CCGGAGCTGCACATCCGCATTAAGGCCGACAAGGAGAACAAGGCGTTGCA
CATCATGGACTCGGGTATCGGCATGACTCACCAGGATCTGATCAATAACC
TGGGTACAATTGCCAAGTCCGGCACTGCCGATTTTCTGGCCAAGATGCAG
GATCCCAGCAAGTCGGAGGGACTCGATATGAACGACATGATTGGACAGTT
CGGTGTGGGCTTTTACTCCGCTTTCTTGGTCGCCGATCGTGTAGTGGTGA
CCACCAAGCACAACGACGACAAACAGTACATCTGGGAGTCGGATGCCAAC
AGCTTCAGCATCACCGAGGATCCCCGTGGCGATACTCTGAAGCGAGGATC
CGTGATCTCGCTGTATCTGAAGGAAGAAGCCCAGGACTTCCTGGAGGAGG
ACACCGTGCGCGAGCTCATCCGCAAGTACTCGCAGTTCATCAACTTCCCC
ATCCGCATGTGGTCCAGCAAGACCGTCGAGGAGGAGGTGCCCGTGGAGGA
GGAGGCCAAGCCCGAGAAGAGCGAGGATGACGTGGAGGATGAGGACGCCA
AGGTCGAGGAGGCCGAAGATGAGAAGCCCAAGACCAAAAAGGTTTCGAAG
ACCACCTGGGACTGGACCCTGATCAACGACAGCAAGCCCATCTGGACGCG
CAAGCCCGCCGAAGTGACCGAGGATGAGTACACTAGCTTCTACAAGAGCC
TGACCAAGGACTCCAGCGAGCCCCTGACCCAGACGCACTTCATCGCCGAG
GGCGAGGTGACCTTCAAGAGTTTGCTCTACGTGCCCAAGGTGCAGCCATC
GGAGTCCTTCAACCGCTACGGCACCAAGTCCGACAACATTAAGCTGTACG
TGCGCCGTGTTTTCATCACCGACGAGTTCAACGACATGATGCCCAACTAC
CTGAGCTTCATTCGTGGCGTCGTCGACTCCGACGATCTGCCCCTGAACGT
TTCCCGCGAAACTCTGCAGCAGCACAAGCTCATCAAGGTGATCAAGAAGA
AGCTGGTCCGCAAGGTTCTCGATATGCTGAAGAAGATCGACAAGGAGGCG
TATGAGAAGTTCTGGAAGGAGTTCTCCACCAACATCAAATTGGGCGTGAT
GGAGGATCCCAGCAACCGATCGCGTCTCGCCAAGCTGCTCCGCTTCCAGA
CCTCCAACGGCAAGGGCGTCACCTCGCTGGCGGAGTACAAGGAGCGCATG
AAGGCCAAGCAGGAGCACATCTACTACATCGCTGGTGCCAACCGCGCTGA
GGTCGAGAAGTCGCCGTTCGTCGAGCGTCTGCTGAGCAAGGGATACGAGG
TGCTGTATCTGGTGGAGGCCGTCGACGAGTACTGCATCTCCGCGCTGCCC
GAGTTCGATGGCAAGAAGTTCCAGAACGTGGCCAAGGAGGGATTCCAGCT
GAACGAGTCCGAGAAGAGCAAGAAGAACTTCGAGTCGCTAAAGAGCACCT
TCGAGCCGCTGGTCAAGTGGCTGAACGATGTGGCACTCAAGGATCAGATC
TCCAAGGCCCAGGTTTCCGAGCGTCTGAGCAACTCGCCATGCGCCCTCGT
GGCCGGCGTCTTCGGCTGGACCGGCAACATGGAGCGTCTGGCCATGTCCA
ACGCCCACCAGAAGTCCGACGATCCTCAGCGCACCTACTACCTCAACCAG
AAGAAAACGCTCGAGATCAATCCCAGGCATCCGCTGATGCGCGAGCTGCT
GCGCCGCGTGGAGGCCGACGAGGCCGATGACACCGCCAAGGACATGGCTG
TGATGATGTTCCGCACCGCCACCCTGCGGTCTGGATACATGCTCCAGGAG
ACTTCGCAGTTCGCCGACAGTATTGAGCAGATGATGCGCCAGACCTTGGG
TGTCTCCCAAGACGAGCAGGTGGAGTTCGACGAGGAGGAGGAGGATGATG
CCGAGGAGACCGCCACCGGCAGCCAGGAGAGCGGCAACGCCGATGATGAG
GAGGAGGAGCAGCAGCACGACGAGCTGTAAAAGCTTTCTAGACCAT
BS10205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp93-RA | 2364 | CG5520-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| Hsp83-RB | 2154 | CG1242-PB | 1031..1206 | 1233..1408 | 265 | 76.7 | Plus |
| Hsp83-RA | 2154 | CG1242-PA | 1031..1206 | 1233..1408 | 265 | 76.7 | Plus |
| Hsp83-RB | 2154 | CG1242-PB | 82..144 | 299..361 | 195 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp93-RA | 2841 | CG5520-RA | 151..2516 | 16..2381 | 11830 | 100 | Plus |
| Hsp83-RB | 2960 | CG1242-RB | 1430..1605 | 1233..1408 | 265 | 76.7 | Plus |
| Hsp83-RA | 2713 | CG1242-RA | 1183..1358 | 1233..1408 | 265 | 76.7 | Plus |
| Hsp83-RB | 2960 | CG1242-RB | 481..543 | 299..361 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27949340..27950594 | 228..1482 | 6275 | 100 | Plus |
| 3R | 32079331 | 3R | 27950928..27951826 | 1483..2381 | 4495 | 100 | Plus |
| 3R | 32079331 | 3R | 27948982..27949073 | 55..146 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 27949170..27949254 | 146..230 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 3195529..3195704 | 1233..1408 | 265 | 76.7 | Plus |
| 3R | 32079331 | 3R | 27948861..27948902 | 16..57 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 3194580..3194642 | 299..361 | 195 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:28:39 has no hits.
BS10205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:11 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 1..2364 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:27 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 197..2574 | 9..2389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:54 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 152..2513 | 17..2378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:30 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 205..2566 | 17..2378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:21 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp93-RA | 152..2513 | 17..2378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:21 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27948862..27948901 | 17..56 | 100 | -> | Plus |
| 3R | 27948984..27949073 | 57..146 | 100 | -> | Plus |
| 3R | 27949171..27949253 | 147..229 | 100 | -> | Plus |
| 3R | 27949342..27950594 | 230..1482 | 100 | -> | Plus |
| 3R | 27950928..27951823 | 1483..2378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:54 Download gff for
BS10205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23776650..23777545 | 1483..2378 | 100 | | Plus |
| arm_3R | 23774584..23774623 | 17..56 | 100 | -> | Plus |
| arm_3R | 23774706..23774795 | 57..146 | 100 | -> | Plus |
| arm_3R | 23774893..23774975 | 147..229 | 100 | -> | Plus |
| arm_3R | 23775064..23776316 | 230..1482 | 100 | -> | Plus |
BS10205.pep Sequence
Translation from 16 to 2379
> BS10205.pep
MKYFLLVGLLLLAGINQIAADDEAATTETIDLDLGSFKEGSRTDAETLKR
EEEAIQLDGLNVAQLKEIREKAKKFTFQTEVNRMMKLIINSLYRNKEIFL
RELISNASDAIDKIRLLALSNSKELETNPELHIRIKADKENKALHIMDSG
IGMTHQDLINNLGTIAKSGTADFLAKMQDPSKSEGLDMNDMIGQFGVGFY
SAFLVADRVVVTTKHNDDKQYIWESDANSFSITEDPRGDTLKRGSVISLY
LKEEAQDFLEEDTVRELIRKYSQFINFPIRMWSSKTVEEEVPVEEEAKPE
KSEDDVEDEDAKVEEAEDEKPKTKKVSKTTWDWTLINDSKPIWTRKPAEV
TEDEYTSFYKSLTKDSSEPLTQTHFIAEGEVTFKSLLYVPKVQPSESFNR
YGTKSDNIKLYVRRVFITDEFNDMMPNYLSFIRGVVDSDDLPLNVSRETL
QQHKLIKVIKKKLVRKVLDMLKKIDKEAYEKFWKEFSTNIKLGVMEDPSN
RSRLAKLLRFQTSNGKGVTSLAEYKERMKAKQEHIYYIAGANRAEVEKSP
FVERLLSKGYEVLYLVEAVDEYCISALPEFDGKKFQNVAKEGFQLNESEK
SKKNFESLKSTFEPLVKWLNDVALKDQISKAQVSERLSNSPCALVAGVFG
WTGNMERLAMSNAHQKSDDPQRTYYLNQKKTLEINPRHPLMRELLRRVEA
DEADDTAKDMAVMMFRTATLRSGYMLQETSQFADSIEQMMRQTLGVSQDE
QVEFDEEEEDDAEETATGSQESGNADDEEEEQQHDEL*
BS10205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp93-PA | 787 | CG5520-PA | 1..787 | 1..787 | 4001 | 100 | Plus |
| Hsp83-PB | 717 | CG1242-PB | 3..715 | 70..777 | 1575 | 45.3 | Plus |
| Hsp83-PA | 717 | CG1242-PA | 3..715 | 70..777 | 1575 | 45.3 | Plus |
| Trap1-PB | 691 | CG3152-PB | 65..668 | 74..723 | 802 | 30.7 | Plus |
| Trap1-PA | 691 | CG3152-PA | 65..668 | 74..723 | 802 | 30.7 | Plus |
