Clone Sequence Records
BS10206.3prime Sequence
946 bp (867 high quality bases) assembled on 2006-04-19
> BS10206.3prime
ATGGTCTAGAAAGCTTCTAGTAACGTCTTCGCTCCCGCTCGCGACTGCGA
GATCGTCGCCGTTCGTTGGAACGATTGCGACGCGTCTCGCGCTGGCGGTC
ACGATCCTTCTCCCGCTCTTTCTGGCGCTCCTCCCGTTCCTTAATACGCA
GCTTGTGCTCCTCAATGCGTTTCTGACGGAATGCCTCCTTTTCTGCGATC
GCTTCCGGCGTAAGTGGCAGCCAGTATATGCAAGGTGTTCCCTTGGTTTT
TCGAAATAGATCATCTAGTAGTCTGATAGGCGGTTCATTCTCCTTCTTAG
TTTTGGACGCTGGCGATCCACTGCGGCTCCTTGCATGTGCATTGCGATCA
AGTCGCTCCCGCTCCCGATCGCGTCCTCGCCCCTCTCTGTCCCTAGAACG
CTTTCGTTCCTGTCCGGCTCGCTCCGCATCCCTAGACCTCGAGTCCAGTC
GATCCTTGCTGTCCCGACGCCTGTCGTTGCTGTGTTTGTCGTGGTCGCTT
GGTTCCTTTTTGCCAACATCCCATTCGCGTACAGGTCGCGCAGGTTTTTT
GTCAGACGGTTCCAACCGGGACCAAGCGTTGCCCGACTGCTGGTTATCTC
TGGTGTTTTCCTGCCCGTACCTCGGAGCCTCGTCCTTCGTTGAAAGTATT
GCCCGATCCATATCAGTGCGACTGCCAAAATCTACATTCAAACATTTGGG
ATTTGACACTGGCCAGCGAACTCCGTGCAGGGCATGTCGGGTTTCGATGG
CCTCGTCTTCAGTGGAATAGGCAACATAGCACTTAGACTTGATCCGATCT
ATCCAGAAACCATCTTCCTCAACGATCTTTCCCGTCCGCGCCAGCAGGCC
TTTCAGCTGCAGCACTGTGAAGGGGCGTACCAAATTGGTGATATAGAGCA
CGTGGCTGGCGCGGTTTCGAGCAGGACTAGGGTCACGGACTATGTG
BS10206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10473-PB | 2220 | CG10473-RB | 1291..2220 | 946..17 | 4650 | 100 | Minus |
CG10473-PA | 2220 | CG10473-RA | 1291..2220 | 946..17 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 1503..2432 | 946..17 | 4650 | 100 | Minus |
Acn-RB | 2513 | CG10473-RB | 1503..2432 | 946..17 | 4650 | 100 | Minus |
Acn-RA | 2884 | CG10473-RA | 1418..2347 | 946..17 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19047420..19047654 | 544..310 | 1175 | 100 | Minus |
2L | 23513712 | 2L | 19047152..19047362 | 755..545 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 19046857..19047047 | 946..756 | 955 | 100 | Minus |
2L | 23513712 | 2L | 19047913..19048096 | 200..17 | 920 | 100 | Minus |
2L | 23513712 | 2L | 19047714..19047825 | 311..200 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:18:48 has no hits.
BS10206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:42 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1291..2220 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:06 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1291..2220 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:59:13 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 1418..2349 | 13..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:12 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 1418..2349 | 13..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:12 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19046857..19047047 | 756..946 | 100 | -> | Minus |
2L | 19047152..19047362 | 545..755 | 100 | -> | Minus |
2L | 19047420..19047654 | 310..544 | 100 | -> | Minus |
2L | 19047716..19047825 | 200..309 | 100 | -> | Minus |
2L | 19047914..19048098 | 13..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:59:13 Download gff for
BS10206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19046857..19047047 | 756..946 | 100 | -> | Minus |
arm_2L | 19047152..19047362 | 545..755 | 100 | -> | Minus |
arm_2L | 19047420..19047654 | 310..544 | 100 | -> | Minus |
arm_2L | 19047716..19047825 | 200..309 | 100 | -> | Minus |
arm_2L | 19047914..19048098 | 13..199 | 98 | | Minus |
BS10206.5prime Sequence
908 bp (814 high quality bases) assembled on 2006-04-19
> BS10206.5prime
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGGCACAAGGAGCAGATAAAGGAACAGCA
ACCCGCAGAGGAGGAGGAACACAAGGGAAAACACAAGCAGATAGACGAAA
ACCCAGAACAAATTCACGATGAACCAGCAGATCTTTCGAACGACAAGCAC
GATCCATG
BS10206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10473-PB | 2220 | CG10473-RB | 1..851 | 58..908 | 4205 | 99.7 | Plus |
CG10473-PA | 2220 | CG10473-RA | 1..851 | 58..908 | 4205 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 178..1063 | 23..908 | 4400 | 99.8 | Plus |
Acn-RB | 2513 | CG10473-RB | 178..1063 | 23..908 | 4400 | 99.8 | Plus |
Acn-RA | 2884 | CG10473-RA | 93..978 | 23..908 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19045532..19046417 | 23..908 | 4400 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:44 has no hits.
BS10206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:43 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1..851 | 58..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:07 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1..851 | 58..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:53 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 91..978 | 20..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:56 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 91..978 | 20..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:56 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19045530..19046417 | 20..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:53 Download gff for
BS10206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19045530..19046417 | 20..908 | 99 | | Plus |
BS10206.complete Sequence
2293 bp assembled on 2007-11-30
GenBank Submission: KX804893
> BS10206.complete
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGGCACAAGGAGCAGATAAAGGAACAGCA
ACCCGCAGAGGAGGAGGAACACAAGGAAAACCACAAGCAGATAGACGAAA
ACCCAGAACAAATTCACGATGAACCAGCAGATCTTTCGAACGACAAGCAC
GATCCATGTCTAAACAGCAGCGCAACCAACACAACCGGTGCTCCAGTTCT
GCAGCAACAACGGTCGGTGCGGAAGCGAAAGTGGCTGACTAACAAAAAGT
CTTCGGATCGTACCCCGCCCGTGCTTGCCATTTCGACGGATTCCCTGAAG
AACATTATAGCCGATGTGGTGCAGCCAGTGCCCCTAAGCGATGTGCAACT
GGAATCGTCCTCAGAGGAGGAAGGCCTGGTCACCAGCGATCGCGATTCAG
AGCGATCTGCTTCACCGGCGCCCCCATCTGAAGCAAGCAAAGACCGCGAT
AACAAGGGCAATACCGCCAACACCTGCGACACCACCGCAGAGGCGTCGGC
AGATAATGAAGGAGCAGGAGCCGCTCCTCCAGCAGCAGCAGACACGGTTT
CAGCCCAGGTCAGCCTGAGCAAAGCCACAGTTTCCACGGCAGCACCACAC
ATAGTCCGTGACCCTAGTCCTGCTCGAAACCGCGCCAGCCACGTGCTCTA
TATCACCAATTTGGTACGCCCCTTCACAGTGCTGCAGCTGAAAGGCCTGC
TGGCGCGGACGGGAAAGATCGTTGAGGAAGATGGTTTCTGGATAGATCGG
ATCAAGTCTAAGTGCTATGTTGCCTATTCCACTGAAGACGAGGCCATCGA
AACCCGACATGCCCTGCACGGAGTTCGCTGGCCAGTGTCAAATCCCAAAT
GTTTGAATGTAGATTTTGGCAGTCGCACTGATATGGATCGGGCAATACTT
TCAACGAAGGACGAGGCTCCGAGGTACGGGCAGGAAAACACCAGAGATAA
CCAGCAGTCGGGCAACGCTTGGTCCCGGTTGGAACCGTCTGACAAAAAAC
CTGCGCGACCTGTACGCGAATGGGATGTTGGCAAAAAGGAACCAAGCGAC
CACGACAAACACAGCAACGACAGGCGTCGGGACAGCAAGGATCGACTGGA
CTCGAGGTCTAGGGATGCGGAGCGAGCCGGACAGGAACGAAAGCGTTCTA
GGGACAGAGAGGGGCGAGGACGCGATCGGGAGCGGGAGCGACTTGATCGC
AATGCACATGCAAGGAGCCGCAGTGGATCGCCAGCGTCCAAAACTAAGAA
GGAGAATGAACCGCCTATCAGACTACTAGATGATCTATTTCGAAAAACCA
AGGGAACACCTTGCATATACTGGCTGCCACTTACGCCGGAAGCGATCGCA
GAAAAGGAGGCATTCCGTCAGAAACGCATTGAGGAGCACAAGCTGCGTAT
TAAGGAACGGGAGGAGCGCCAGAAAGAGCGGGAGAAGGATCGTGACCGCC
AGCGCGAGACGCGTCGCAATCGTTCCAACGAACGGCGACGATCTCGCAGT
CGCGAGCGGGAGCGAAGACGTTACTAGAAGCTTTCTAGACCAT
BS10206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 2220 | CG10473-PC | 1..2220 | 58..2277 | 11100 | 100 | Plus |
Acn-RB | 2220 | CG10473-PB | 1..2220 | 58..2277 | 11100 | 100 | Plus |
Acn-RA | 2220 | CG10473-PA | 1..2220 | 58..2277 | 11100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 178..2432 | 23..2277 | 11275 | 100 | Plus |
Acn-RB | 2513 | CG10473-RB | 178..2432 | 23..2277 | 11275 | 100 | Plus |
Acn-RA | 2884 | CG10473-RA | 93..2347 | 23..2277 | 11275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19045532..19047047 | 23..1538 | 7580 | 100 | Plus |
2L | 23513712 | 2L | 19047420..19047654 | 1750..1984 | 1175 | 100 | Plus |
2L | 23513712 | 2L | 19047152..19047362 | 1539..1749 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 19047913..19048096 | 2094..2277 | 920 | 100 | Plus |
2L | 23513712 | 2L | 19047714..19047825 | 1983..2094 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1062..1146 | 1260..1347 | 135 | 64.8 | Plus |
BS10206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:13 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 1..2220 | 58..2277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:29 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 70..2328 | 20..2281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:10 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 87..2347 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:51 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 66..2326 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:10 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 87..2347 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:10 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19047914..19048096 | 2095..2277 | 100 | | Plus |
2L | 19045526..19047047 | 17..1538 | 99 | -> | Plus |
2L | 19047152..19047362 | 1539..1749 | 100 | -> | Plus |
2L | 19047420..19047654 | 1750..1984 | 100 | -> | Plus |
2L | 19047716..19047825 | 1985..2094 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:10 Download gff for
BS10206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19045526..19047047 | 17..1538 | 99 | -> | Plus |
arm_2L | 19047152..19047362 | 1539..1749 | 100 | -> | Plus |
arm_2L | 19047420..19047654 | 1750..1984 | 100 | -> | Plus |
arm_2L | 19047716..19047825 | 1985..2094 | 100 | -> | Plus |
arm_2L | 19047914..19048096 | 2095..2277 | 100 | | Plus |
BS10206.pep Sequence
Translation from 48 to 2276
> BS10206.pep
MRRRSERKKSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAE
CPKVPPASQEINEARASSEERAGSGASPVRRSRGSRTTPRKRTESKGGDK
KVDTIPEEEPENGKDVEKDAVEEEKTVAPPAANESESEDRAKTEDQQAQD
DESCAEPAVVKDDDVEKEDLKPQQEVPTSTDDDTKQSEPEQEVKVPSPSS
KDEEHLKTTSDVLDIQTEEVDERDEEASAPAERRETKKRHKEQIKEQQPA
EEEEHKENHKQIDENPEQIHDEPADLSNDKHDPCLNSSATNTTGAPVLQQ
QRSVRKRKWLTNKKSSDRTPPVLAISTDSLKNIIADVVQPVPLSDVQLES
SSEEEGLVTSDRDSERSASPAPPSEASKDRDNKGNTANTCDTTAEASADN
EGAGAAPPAAADTVSAQVSLSKATVSTAAPHIVRDPSPARNRASHVLYIT
NLVRPFTVLQLKGLLARTGKIVEEDGFWIDRIKSKCYVAYSTEDEAIETR
HALHGVRWPVSNPKCLNVDFGSRTDMDRAILSTKDEAPRYGQENTRDNQQ
SGNAWSRLEPSDKKPARPVREWDVGKKEPSDHDKHSNDRRRDSKDRLDSR
SRDAERAGQERKRSRDREGRGRDRERERLDRNAHARSRSGSPASKTKKEN
EPPIRLLDDLFRKTKGTPCIYWLPLTPEAIAEKEAFRQKRIEEHKLRIKE
REERQKEREKDRDRQRETRRNRSNERRRSRSRERERRRY*
BS10206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-PC | 739 | CG10473-PC | 1..739 | 1..739 | 3806 | 100 | Plus |
Acn-PB | 739 | CG10473-PB | 1..739 | 1..739 | 3806 | 100 | Plus |
Acn-PA | 739 | CG10473-PA | 1..739 | 1..739 | 3806 | 100 | Plus |
futsch-PF | 5495 | CG34387-PF | 3456..4145 | 2..723 | 243 | 18.3 | Plus |
futsch-PE | 5495 | CG34387-PE | 3456..4145 | 2..723 | 243 | 18.3 | Plus |
futsch-PF | 5495 | CG34387-PF | 3070..3831 | 6..737 | 184 | 17.9 | Plus |
futsch-PF | 5495 | CG34387-PF | 2951..3702 | 8..731 | 177 | 19 | Plus |