Clone BS10209 Report

Search the DGRC for BS10209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:9
Vector:pDNR-Dual
Associated Gene/Transcripteca-RA
Protein status:BS10209.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10209.3prime Sequence

681 bp (680 high quality bases) assembled on 2006-04-19

> BS10209.3prime
ATGGTCTAGAAAGCTTTCACACCAGTTTCTTGGCCTCAAAGAAGCTCTTG
AGATGACGCATCTGCCAGAAGCCCATGCAAACCAAGACGACGGTCTGGGC
CAGCGACCACCAGAGCACGCGGGAGTTGGTGCTCTCGCTGGTGTGACGGA
ACCGCTCCTCGCGGTATCGCTGGTAGTTCTGCTCCTTGGTGATCTGCTCC
ACCTGGTCAAGTAGCTGGCGGATGCGCAGCTGCAGCTCAGTCAGTTTCTC
CTTCTGCGCCACATGGGCGTAGTCGATAGCGTGCTCTCCCACCTGGATGT
CCAGGTGAACACGCAGCTGGGCACCACTGAACCACGCGGTGCTGTTCGAG
AACATGCAGATGACGTGCTCGCCAGGAGTGTGCGAGGTGAACGAGATGCG
GCCCTGTGAGCTGTACACGCGGGACAGCACAATCTTGTCGTCGCTGTCGC
GTACTTCCACATGCATGCCGATTCCGGGCGACGAGGGCATGAATCCATTA
GAGCGCGGATCATACAGCTCTACCTTGTAGTTAACAATCACAGTTGTCTC
GTCGGGAACCTCCTCGATGAAGCACTTGCGCTCCGTCTCCGATATGTGGA
AGTACAAGCCGCAGGCGCTGTGCAGGACGCACAGAATCAGGGCCAGGCTG
ATGAATTGGTCGCGCATGTCGACTGATAACT

BS10209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33104-PA 651 eca-RA 1..651 667..17 3255 100 Minus
CG33105-PA 735 CG33105-RA 1..605 667..63 3000 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..748 667..17 3255 100 Minus
Unc-115b-RE 3535 CG31332-RE 77..681 667..63 3010 99.8 Minus
p24-2-RB 3535 CG33105-RB 77..681 667..63 3010 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684667..9685185 17..535 2595 100 Plus
3R 32079331 3R 9692033..9692505 63..535 2365 100 Plus
3R 32079331 3R 9685247..9685379 535..667 665 100 Plus
3R 32079331 3R 9692567..9692699 535..667 650 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 21:47:43 has no hits.

BS10209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:46 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:12 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33104-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:50 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..748 17..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..748 17..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9684667..9685184 17..534 100 <- Plus
3R 9685247..9685389 535..677 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:50 Download gff for BS10209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510389..5510906 17..534 100 <- Plus
arm_3R 5510969..5511111 535..677 97   Plus

BS10209.5prime Sequence

681 bp (680 high quality bases) assembled on 2006-04-19

> BS10209.5prime
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGTGAAAGCTTTCTAGACC

BS10209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33104-PA 651 eca-RA 1..651 17..667 3255 100 Plus
CG33105-PA 735 CG33105-RA 1..605 17..621 3000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..748 17..667 3255 100 Plus
Unc-115b-RE 3535 CG31332-RE 77..681 17..621 3010 99.8 Plus
p24-2-RB 3535 CG33105-RB 77..681 17..621 3010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684667..9685185 667..149 2595 100 Minus
3R 32079331 3R 9692033..9692505 621..149 2365 100 Minus
3R 32079331 3R 9685247..9685379 149..17 665 100 Minus
3R 32079331 3R 9692567..9692699 149..17 650 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:14:13 has no hits.

BS10209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:47 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:13 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33104-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:40 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..748 7..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:16 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..748 7..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:16 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9685247..9685389 7..149 97   Minus
3R 9684667..9685184 150..667 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:40 Download gff for BS10209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510389..5510906 150..667 100 <- Minus
arm_3R 5510969..5511111 7..149 97   Minus

BS10209.complete Sequence

683 bp (683 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636596

> BS10209.complete
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGTGAAAGCTTTCTAGACCAT

BS10209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 651 CG33104-PA 1..651 17..667 3255 100 Plus
p24-2-RB 735 CG33105-PB 1..605 17..621 3010 99.8 Plus
p24-2-RA 735 CG33105-PA 1..605 17..621 3010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..748 17..667 3255 100 Plus
Unc-115b-RE 3535 CG31332-RE 77..681 17..621 3010 99.8 Plus
p24-2-RB 3535 CG33105-RB 77..681 17..621 3010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684667..9685185 667..149 2595 100 Minus
3R 32079331 3R 9692033..9692505 621..149 2365 100 Minus
3R 32079331 3R 9685247..9685379 149..17 665 100 Minus
3R 32079331 3R 9692567..9692699 149..17 650 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 16:32:53 has no hits.

BS10209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:37 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:05 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 143..803 7..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:39 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 98..747 17..666 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:37 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 143..803 7..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:58 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 98..747 17..666 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:58 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9684668..9685184 150..666 100 <- Minus
3R 9685247..9685379 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:39 Download gff for BS10209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510390..5510906 150..666 100 <- Minus
arm_3R 5510969..5511101 17..149 100   Minus

BS10209.pep Sequence

Translation from 16 to 666

> BS10209.pep
MRDQFISLALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVE
LYDPRSNGFMPSSPGIGMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGE
HVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVAQKEKLTELQLRIR
QLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF
WQMRHLKSFFEAKKLV*

BS10209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
eca-PA 216 CG33104-PA 1..216 1..216 1132 100 Plus
p24-2-PB 244 CG33105-PB 1..206 1..206 1058 97.6 Plus
p24-2-PA 244 CG33105-PA 1..206 1..206 1058 97.6 Plus
bai-PA 206 CG11785-PA 3..205 2..216 218 27.9 Plus
CHOp24-PB 208 CG3564-PB 16..208 10..216 181 25.6 Plus