Clone Sequence Records
BS10209.3prime Sequence
681 bp (680 high quality bases) assembled on 2006-04-19
> BS10209.3prime
ATGGTCTAGAAAGCTTTCACACCAGTTTCTTGGCCTCAAAGAAGCTCTTG
AGATGACGCATCTGCCAGAAGCCCATGCAAACCAAGACGACGGTCTGGGC
CAGCGACCACCAGAGCACGCGGGAGTTGGTGCTCTCGCTGGTGTGACGGA
ACCGCTCCTCGCGGTATCGCTGGTAGTTCTGCTCCTTGGTGATCTGCTCC
ACCTGGTCAAGTAGCTGGCGGATGCGCAGCTGCAGCTCAGTCAGTTTCTC
CTTCTGCGCCACATGGGCGTAGTCGATAGCGTGCTCTCCCACCTGGATGT
CCAGGTGAACACGCAGCTGGGCACCACTGAACCACGCGGTGCTGTTCGAG
AACATGCAGATGACGTGCTCGCCAGGAGTGTGCGAGGTGAACGAGATGCG
GCCCTGTGAGCTGTACACGCGGGACAGCACAATCTTGTCGTCGCTGTCGC
GTACTTCCACATGCATGCCGATTCCGGGCGACGAGGGCATGAATCCATTA
GAGCGCGGATCATACAGCTCTACCTTGTAGTTAACAATCACAGTTGTCTC
GTCGGGAACCTCCTCGATGAAGCACTTGCGCTCCGTCTCCGATATGTGGA
AGTACAAGCCGCAGGCGCTGTGCAGGACGCACAGAATCAGGGCCAGGCTG
ATGAATTGGTCGCGCATGTCGACTGATAACT
BS10209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33104-PA | 651 | eca-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
CG33105-PA | 735 | CG33105-RA | 1..605 | 667..63 | 3000 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..748 | 667..17 | 3255 | 100 | Minus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 667..63 | 3010 | 99.8 | Minus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 667..63 | 3010 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684667..9685185 | 17..535 | 2595 | 100 | Plus |
3R | 32079331 | 3R | 9692033..9692505 | 63..535 | 2365 | 100 | Plus |
3R | 32079331 | 3R | 9685247..9685379 | 535..667 | 665 | 100 | Plus |
3R | 32079331 | 3R | 9692567..9692699 | 535..667 | 650 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:47:43 has no hits.
BS10209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:46 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:12 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33104-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:50 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..748 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..748 | 17..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9684667..9685184 | 17..534 | 100 | <- | Plus |
3R | 9685247..9685389 | 535..677 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:50 Download gff for
BS10209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510389..5510906 | 17..534 | 100 | <- | Plus |
arm_3R | 5510969..5511111 | 535..677 | 97 | | Plus |
BS10209.5prime Sequence
681 bp (680 high quality bases) assembled on 2006-04-19
> BS10209.5prime
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGTGAAAGCTTTCTAGACC
BS10209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33104-PA | 651 | eca-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG33105-PA | 735 | CG33105-RA | 1..605 | 17..621 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..748 | 17..667 | 3255 | 100 | Plus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684667..9685185 | 667..149 | 2595 | 100 | Minus |
3R | 32079331 | 3R | 9692033..9692505 | 621..149 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 9685247..9685379 | 149..17 | 665 | 100 | Minus |
3R | 32079331 | 3R | 9692567..9692699 | 149..17 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:14:13 has no hits.
BS10209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:47 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:13 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33104-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:40 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..748 | 7..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:16 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..748 | 7..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:16 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9685247..9685389 | 7..149 | 97 | | Minus |
3R | 9684667..9685184 | 150..667 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:40 Download gff for
BS10209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510389..5510906 | 150..667 | 100 | <- | Minus |
arm_3R | 5510969..5511111 | 7..149 | 97 | | Minus |
BS10209.complete Sequence
683 bp (683 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636596
> BS10209.complete
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGTGAAAGCTTTCTAGACCAT
BS10209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 651 | CG33104-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
p24-2-RB | 735 | CG33105-PB | 1..605 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RA | 735 | CG33105-PA | 1..605 | 17..621 | 3010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..748 | 17..667 | 3255 | 100 | Plus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684667..9685185 | 667..149 | 2595 | 100 | Minus |
3R | 32079331 | 3R | 9692033..9692505 | 621..149 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 9685247..9685379 | 149..17 | 665 | 100 | Minus |
3R | 32079331 | 3R | 9692567..9692699 | 149..17 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:53 has no hits.
BS10209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:37 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:05 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 143..803 | 7..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:39 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 98..747 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:37 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 143..803 | 7..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:58 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 98..747 | 17..666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:58 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9684668..9685184 | 150..666 | 100 | <- | Minus |
3R | 9685247..9685379 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:39 Download gff for
BS10209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510390..5510906 | 150..666 | 100 | <- | Minus |
arm_3R | 5510969..5511101 | 17..149 | 100 | | Minus |
BS10209.pep Sequence
Translation from 16 to 666
> BS10209.pep
MRDQFISLALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVE
LYDPRSNGFMPSSPGIGMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGE
HVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVAQKEKLTELQLRIR
QLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF
WQMRHLKSFFEAKKLV*
BS10209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-PA | 216 | CG33104-PA | 1..216 | 1..216 | 1132 | 100 | Plus |
p24-2-PB | 244 | CG33105-PB | 1..206 | 1..206 | 1058 | 97.6 | Plus |
p24-2-PA | 244 | CG33105-PA | 1..206 | 1..206 | 1058 | 97.6 | Plus |
bai-PA | 206 | CG11785-PA | 3..205 | 2..216 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 16..208 | 10..216 | 181 | 25.6 | Plus |