Clone BS10210 Report

Search the DGRC for BS10210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptRpS2-RA
Protein status:BS10210.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10210.3prime Sequence

834 bp (833 high quality bases) assembled on 2006-04-19

> BS10210.3prime
ATGGTCTAGAAAGCTTTTAGGCATCGGCGTGCAGACGAGGAGTGGGCTTG
GACAGGAAGTCCGAGTATGCCTGGTAAGGAGTGGAGCCCAGAGGCATCTC
CTTCCACAGATCGGGGGTCAAGTACGCGTACGTCTTGGCGATGGCGGCAT
ATGTAGCCTTGGCGAAGTTGCCGAGGGTTCCAGTGGAGCCACGGGCCGAG
GTGTAGCAATCCTCAATACCGGCCATGGTCAGCAGCTTCTTGGGCACGGG
GGCCGAGACAATGCCAGTACCACGGGGAGCGGGGATGAGGCGCACGGAGA
CGGAACCGCACTTGCCGGTGACCTTGCAGGGCACGGTGTGGGGCTTGCCG
ATCTTGTTGCCCCAGTAGCCACGGCGCACGGGCACCACGGAGAGCTTGGC
CAGAATGATGGCACCACGGATGGCGGTGGCCACTTCCTTGCTGCACTTAA
CGCCCAGACCAATGTGGCCATTGTTGTCGCCGATGGCAACGAAGGCCTTG
AAACGGGTACGCTGACCAGCACGGGTCTGCTTCTGGACGGGCATGATCTT
CAGCACCTCATCCTTCAGCGAGGATCCCAGGAAGAAGTCGATGATCTCGA
ACTCTTTGATGGGAAGCGAGTACAGGTAGATCTCCTCCAAAGACTTGATC
TTGCCCTCGCGCACCAGGCGTCCCAGCTTGGTCACTGGCACCCACTCCTT
GGAGTCCTCCTTTCCACGTCCACGGGCCCAGCGTCCACGGCCACGACCGC
GTCCACCACGACCACCACGAGAGCCAAATCCGCCACGGAATCCACTACGG
GCTGGAGCTTCGTCCGCCATGTCGACTGATAACT

BS10210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5920-PA 804 sop-RA 1..804 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS2-RC 947 CG5920-RC 82..885 820..17 4020 100 Minus
RpS2-RB 1177 CG5920-RB 312..1115 820..17 4020 100 Minus
RpS2-RA 916 CG5920-RA 51..854 820..17 4020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9896327..9897130 17..820 4020 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:14:57 has no hits.

BS10210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:48 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
sop-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:14 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5920-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:39 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..854 17..820 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:16 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..854 17..820 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:16 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9896327..9897135 17..829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:39 Download gff for BS10210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9896327..9897135 17..829 99   Plus

BS10210.5prime Sequence

834 bp (817 high quality bases) assembled on 2006-04-19

> BS10210.5prime
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCTAANAGCTTTCTAGACC

BS10210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5920-PA 804 sop-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS2-RC 947 CG5920-RC 82..885 17..820 4020 100 Plus
RpS2-RB 1177 CG5920-RB 312..1115 17..820 4020 100 Plus
RpS2-RA 916 CG5920-RA 51..854 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9896327..9897130 820..17 4020 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:48:49 has no hits.

BS10210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:49 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
sop-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:17 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5920-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:58 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..854 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:51 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..854 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:51 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9896327..9897135 8..820 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:58 Download gff for BS10210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9896327..9897135 8..820 99   Minus

BS10210.complete Sequence

836 bp (836 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636597

> BS10210.complete
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCTAAAAGCTTTCTAGACCAT

BS10210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS2-RC 804 CG5920-PC 1..804 17..820 4020 100 Plus
RpS2-RB 804 CG5920-PB 1..804 17..820 4020 100 Plus
RpS2-RA 804 CG5920-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS2-RC 947 CG5920-RC 82..885 17..820 4020 100 Plus
RpS2-RB 1177 CG5920-RB 312..1115 17..820 4020 100 Plus
RpS2-RA 916 CG5920-RA 51..854 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9896327..9897130 820..17 4020 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:54:00 has no hits.

BS10210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:28 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
sop-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:58 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
sop-RA 72..875 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:16 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..852 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:28 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
sop-RA 72..875 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:13 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
RpS2-RA 51..852 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:13 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9896329..9897130 17..818 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:16 Download gff for BS10210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9896329..9897130 17..818 100   Minus

BS10210.pep Sequence

Translation from 16 to 819

> BS10210.pep
MADEAPARSGFRGGFGSRGGRGGRGRGRGRWARGRGKEDSKEWVPVTKLG
RLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTR
AGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR
GYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMA
GIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQ
AYSDFLSKPTPRLHADA*

BS10210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpS2-PC 267 CG5920-PC 1..267 1..267 1396 100 Plus
RpS2-PB 267 CG5920-PB 1..267 1..267 1396 100 Plus
RpS2-PA 267 CG5920-PA 1..267 1..267 1396 100 Plus