Clone Sequence Records
BS10210.3prime Sequence
834 bp (833 high quality bases) assembled on 2006-04-19
> BS10210.3prime
ATGGTCTAGAAAGCTTTTAGGCATCGGCGTGCAGACGAGGAGTGGGCTTG
GACAGGAAGTCCGAGTATGCCTGGTAAGGAGTGGAGCCCAGAGGCATCTC
CTTCCACAGATCGGGGGTCAAGTACGCGTACGTCTTGGCGATGGCGGCAT
ATGTAGCCTTGGCGAAGTTGCCGAGGGTTCCAGTGGAGCCACGGGCCGAG
GTGTAGCAATCCTCAATACCGGCCATGGTCAGCAGCTTCTTGGGCACGGG
GGCCGAGACAATGCCAGTACCACGGGGAGCGGGGATGAGGCGCACGGAGA
CGGAACCGCACTTGCCGGTGACCTTGCAGGGCACGGTGTGGGGCTTGCCG
ATCTTGTTGCCCCAGTAGCCACGGCGCACGGGCACCACGGAGAGCTTGGC
CAGAATGATGGCACCACGGATGGCGGTGGCCACTTCCTTGCTGCACTTAA
CGCCCAGACCAATGTGGCCATTGTTGTCGCCGATGGCAACGAAGGCCTTG
AAACGGGTACGCTGACCAGCACGGGTCTGCTTCTGGACGGGCATGATCTT
CAGCACCTCATCCTTCAGCGAGGATCCCAGGAAGAAGTCGATGATCTCGA
ACTCTTTGATGGGAAGCGAGTACAGGTAGATCTCCTCCAAAGACTTGATC
TTGCCCTCGCGCACCAGGCGTCCCAGCTTGGTCACTGGCACCCACTCCTT
GGAGTCCTCCTTTCCACGTCCACGGGCCCAGCGTCCACGGCCACGACCGC
GTCCACCACGACCACCACGAGAGCCAAATCCGCCACGGAATCCACTACGG
GCTGGAGCTTCGTCCGCCATGTCGACTGATAACT
BS10210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5920-PA | 804 | sop-RA | 1..804 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS2-RC | 947 | CG5920-RC | 82..885 | 820..17 | 4020 | 100 | Minus |
RpS2-RB | 1177 | CG5920-RB | 312..1115 | 820..17 | 4020 | 100 | Minus |
RpS2-RA | 916 | CG5920-RA | 51..854 | 820..17 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9896327..9897130 | 17..820 | 4020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:14:57 has no hits.
BS10210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:48 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sop-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:14 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5920-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:39 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..854 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:16 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..854 | 17..820 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:16 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9896327..9897135 | 17..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:39 Download gff for
BS10210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9896327..9897135 | 17..829 | 99 | | Plus |
BS10210.5prime Sequence
834 bp (817 high quality bases) assembled on 2006-04-19
> BS10210.5prime
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCTAANAGCTTTCTAGACC
BS10210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5920-PA | 804 | sop-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS2-RC | 947 | CG5920-RC | 82..885 | 17..820 | 4020 | 100 | Plus |
RpS2-RB | 1177 | CG5920-RB | 312..1115 | 17..820 | 4020 | 100 | Plus |
RpS2-RA | 916 | CG5920-RA | 51..854 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9896327..9897130 | 820..17 | 4020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:48:49 has no hits.
BS10210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:49 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sop-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:17 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5920-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:58 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..854 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:51 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..854 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:51 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9896327..9897135 | 8..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:58 Download gff for
BS10210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9896327..9897135 | 8..820 | 99 | | Minus |
BS10210.complete Sequence
836 bp (836 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636597
> BS10210.complete
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCTAAAAGCTTTCTAGACCAT
BS10210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS2-RC | 804 | CG5920-PC | 1..804 | 17..820 | 4020 | 100 | Plus |
RpS2-RB | 804 | CG5920-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
RpS2-RA | 804 | CG5920-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS2-RC | 947 | CG5920-RC | 82..885 | 17..820 | 4020 | 100 | Plus |
RpS2-RB | 1177 | CG5920-RB | 312..1115 | 17..820 | 4020 | 100 | Plus |
RpS2-RA | 916 | CG5920-RA | 51..854 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9896327..9897130 | 820..17 | 4020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:54:00 has no hits.
BS10210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:28 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sop-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:58 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sop-RA | 72..875 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:16 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..852 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:28 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sop-RA | 72..875 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:13 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS2-RA | 51..852 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:13 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9896329..9897130 | 17..818 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:16 Download gff for
BS10210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9896329..9897130 | 17..818 | 100 | | Minus |
BS10210.pep Sequence
Translation from 16 to 819
> BS10210.pep
MADEAPARSGFRGGFGSRGGRGGRGRGRGRWARGRGKEDSKEWVPVTKLG
RLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTR
AGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR
GYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMA
GIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQ
AYSDFLSKPTPRLHADA*
BS10210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS2-PC | 267 | CG5920-PC | 1..267 | 1..267 | 1396 | 100 | Plus |
RpS2-PB | 267 | CG5920-PB | 1..267 | 1..267 | 1396 | 100 | Plus |
RpS2-PA | 267 | CG5920-PA | 1..267 | 1..267 | 1396 | 100 | Plus |