Clone BS10212 Report

Search the DGRC for BS10212

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptIndy-RA
Protein status:BS10212.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10212.3prime Sequence

922 bp (867 high quality bases) assembled on 2006-04-19

> BS10212.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTTGTTTCCCAGTGCTGCCGCGGCA
TAAATCTGAGCCCATTCGGGGAACGAGTTAAGGTTCGGATAGACGACCAG
GCCCCAGGTTTGGCAGAAAACAAACAGGGTGATGATGGTAATGATGGTCG
GACCGATTCCAGCAATGGCCATGTCCTTCGTCCTAATGTTGGCATAGCCA
GCAACCAAAGCGTTGGGCGGAGTACTAACCGGCAGGTGGAAGGCCATACT
GCAGGCCAAGCCAGCGGGCAGGATCAGGTACAGAGGATGGATCTCAATGG
CCAGGGACATCTCGGCCAGAACGGGAATAATAATGTTGGCAATCGCCACA
TTGGAGCTGAAGGCGGTCAGGAACACAGCCACCAGGATGACCACCAGTAA
GAGGACAGAGTTGGGCAGAACCTTCAATCCAATCAGAGCATTGCCAATCA
GCTTGGCCATGCCGCTCTGCTTGCTGCCTTCGGCCAAAGCGAAGCCACCG
CCAAGCAGGAACACCAGACCCCATGGCACCTTGGTCTGGATGAACTTCCA
GGTGATCAGCGATGGAGTGGGACCCGTGGGCACTGGACCACCGCGTCTGG
TGCAGTAGCGTAGGAAAGCATAATTGGCGGGCAGCATGAAGCACATGACG
ACGACAAAAATAGTGGGCATAGAGTTACGAATGTCCTTGGAATTCAGCAA
ATCGGCCCATCCCAAAAAGATGCCGGGCTTGCGGGTGAAGTACATCACAA
CCATAAAAATGAACAGAATCATCACTTGGATCTCGTGAATGGACATGGGA
CCCAGATCCTTGTAGCGCTGATCGATAACCTTTTTGGCGACATCGGCGCC
CTCTCGTCCCCTCTGGACTTCCTGTGCCTCCTTGCTCTTGGGACGCCACA
GACCCATGAAGTGCCATTGCAG

BS10212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3979-PB 1773 Indy-RB 868..1773 922..17 4530 100 Minus
CG3979-PC 1719 Indy-RC 814..1719 922..17 4530 100 Minus
CG3979-PA 1719 Indy-RA 814..1719 922..17 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 1085..1991 922..16 4535 100 Minus
Indy-RA 2484 CG3979-RA 988..1894 922..16 4535 100 Minus
Indy-RC 2600 CG3979-RC 1104..2010 922..16 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18829579..18829963 308..692 1910 99.7 Plus
3L 28110227 3L 18829222..18829514 16..308 1465 100 Plus
3L 28110227 3L 18830275..18830511 686..922 1185 100 Plus
Blast to na_te.dros performed on 2015-02-01 10:27:52 has no hits.

BS10212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:53 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-PA 814..1719 17..922 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:21 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3979-PA 814..1719 17..922 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:52 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 1104..2019 7..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:27 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 1104..2019 7..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:27 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18829220..18829513 15..307 99 <- Plus
3L 18829579..18829957 308..686 100 <- Plus
3L 18830276..18830511 687..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:52 Download gff for BS10212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18822320..18822613 15..307 99 <- Plus
arm_3L 18822679..18823057 308..686 100 <- Plus
arm_3L 18823376..18823611 687..922 100   Plus

BS10212.5prime Sequence

861 bp (831 high quality bases) assembled on 2006-04-19

> BS10212.5prime
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCC

BS10212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3979-PB 1773 Indy-RB 55..899 17..861 4225 100 Plus
CG3979-PC 1719 Indy-RC 1..845 17..861 4225 100 Plus
CG3979-PA 1719 Indy-RA 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 272..1116 17..861 4225 100 Plus
Indy-RA 2484 CG3979-RA 175..1019 17..861 4225 100 Plus
Indy-RC 2600 CG3979-RC 291..1135 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18830480..18830734 861..607 1275 100 Minus
3L 28110227 3L 18830839..18831035 607..411 970 99.5 Minus
3L 28110227 3L 18831093..18831242 417..268 750 100 Minus
3L 28110227 3L 18831494..18831621 152..25 640 100 Minus
3L 28110227 3L 18831311..18831427 268..152 585 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:36:57 has no hits.

BS10212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:54 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:23 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3979-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:45 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 284..1135 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:11 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 284..1135 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:11 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18831495..18831621 25..151 100 <- Minus
3L 18830480..18830734 607..861 100 <- Minus
3L 18830840..18831028 418..606 100 <- Minus
3L 18831093..18831241 269..417 100 <- Minus
3L 18831311..18831427 152..268 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:45 Download gff for BS10212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18824411..18824527 152..268 100 <- Minus
arm_3L 18824595..18824721 25..151 100 <- Minus
arm_3L 18823580..18823834 607..861 100 <- Minus
arm_3L 18823940..18824128 418..606 100 <- Minus
arm_3L 18824193..18824341 269..417 100 <- Minus

BS10212.complete Sequence

1751 bp assembled on 2007-10-17

GenBank Submission: FJ636598

> BS10212.complete
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCCAGAGGGGACGAGA
GGGCGCCGATGTCGCCAAAAAGGTTATCGATCAGCGCTACAAGGATCTGG
GTCCCATGTCCATTCACGAGATCCAAGTGATGATTCTGTTCATTTTTATG
GTTGTGATGTACTTCACCCGCAAGCCCGGCATCTTTTTGGGATGGGCCGA
TTTGCTGAATTCCAAGGACATTCGTAACTCTATGCCCACTATTTTTGTCG
TCGTCATGTGCTTCATGCTGCCCGCCAATTATGCTTTCCTACGCTACTGC
ACCAGACGCGGTGGTCCAGTGCCCACGGGTCCCACTCCATCGCTGATCAC
CTGGAAGTTCATCCAGACCAAGGTGCCATGGGGTCTGGTGTTCCTGCTTG
GCGGTGGCTTCGCTTTGGCCGAAGGCAGCAAGCAGAGCGGCATGGCCAAG
CTGATTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTGTCCT
CTTACTGGTGGTCATCCTGGTGGCTGTGTTCCTGACCGCCTTCAGCTCCA
ATGTGGCGATTGCCAACATTATTATTCCCGTTCTGGCCGAGATGTCCCTG
GCCATTGAGATCCATCCTCTGTACCTGATCCTGCCCGCTGGCTTGGCCTG
CAGTATGGCCTTCCACCTGCCGGTTAGTACTCCGCCCAACGCTTTGGTTG
CTGGCTATGCCAACATTAGGACGAAGGACATGGCCATTGCTGGAATCGGT
CCGACCATCATTACCATCATCACCCTGTTTGTTTTCTGCCAAACCTGGGG
CCTGGTCGTCTATCCGAACCTTAACTCGTTCCCCGAATGGGCTCAGATTT
ATGCCGCGGCAGCACTGGGAAACAAGACGCACTAGAAGCTTTCTAGACCA
T

BS10212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 1719 CG3979-PD 1..1719 17..1735 8595 100 Plus
Indy-RA 1719 CG3979-PA 1..1719 17..1735 8595 100 Plus
Indy-RC 1719 CG3979-PC 1..1719 17..1735 8595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 272..1991 17..1736 8600 100 Plus
Indy-RA 2484 CG3979-RA 175..1894 17..1736 8600 100 Plus
Indy-RC 2600 CG3979-RC 291..2010 17..1736 8600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18830275..18830734 1066..607 2300 100 Minus
3L 28110227 3L 18829579..18829963 1444..1060 1910 99.7 Minus
3L 28110227 3L 18829222..18829514 1736..1444 1465 100 Minus
3L 28110227 3L 18830839..18831035 607..411 970 99.5 Minus
3L 28110227 3L 18831093..18831242 417..268 750 100 Minus
3L 28110227 3L 18831494..18831621 152..25 640 100 Minus
3L 28110227 3L 18831311..18831427 268..152 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:30:28 has no hits.

BS10212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:15 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 1..1719 17..1735 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:32 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 147..1882 9..1745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:45 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 291..2009 17..1735 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:37 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 154..1872 17..1735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:42 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 291..2009 17..1735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:42 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18829223..18829513 1445..1735 100 <- Minus
3L 18829579..18829957 1066..1444 100 <- Minus
3L 18830276..18830734 607..1065 100 <- Minus
3L 18830840..18831028 418..606 100 <- Minus
3L 18831093..18831241 269..417 100 <- Minus
3L 18831311..18831427 152..268 100 <- Minus
3L 18831495..18831628 17..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:45 Download gff for BS10212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18824411..18824527 152..268 100 <- Minus
arm_3L 18824595..18824728 17..151 97   Minus
arm_3L 18822323..18822613 1445..1735 100 <- Minus
arm_3L 18822679..18823057 1066..1444 100 <- Minus
arm_3L 18823376..18823834 607..1065 100 <- Minus
arm_3L 18823940..18824128 418..606 100 <- Minus
arm_3L 18824193..18824341 269..417 100 <- Minus

BS10212.pep Sequence

Translation from 16 to 1734

> BS10212.pep
MEIEIGEQPQPPVKCSNFFANHWKGLVVFLVPLLCLPVMLLNEGAEFRCM
YLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVM
FMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWI
SNAACTAMMCPIIQAVLEELQAQGVCKINHEPQYQIVGGNKKNNEDEPPY
PTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDF
PTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKEAQEVQRGREGADVA
KKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSK
DIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQ
TKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVI
LVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFH
LPVSTPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYP
NLNSFPEWAQIYAAAALGNKTH*

BS10212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-PD 572 CG3979-PD 1..572 1..572 2994 100 Plus
Indy-PA 572 CG3979-PA 1..572 1..572 2994 100 Plus
Indy-PC 572 CG3979-PC 1..572 1..572 2994 100 Plus
Indy-PB 590 CG3979-PB 19..590 1..572 2994 100 Plus
CG33934-PE 556 CG33934-PE 16..555 14..559 1531 51.3 Plus