Clone Sequence Records
BS10212.3prime Sequence
922 bp (867 high quality bases) assembled on 2006-04-19
> BS10212.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTTGTTTCCCAGTGCTGCCGCGGCA
TAAATCTGAGCCCATTCGGGGAACGAGTTAAGGTTCGGATAGACGACCAG
GCCCCAGGTTTGGCAGAAAACAAACAGGGTGATGATGGTAATGATGGTCG
GACCGATTCCAGCAATGGCCATGTCCTTCGTCCTAATGTTGGCATAGCCA
GCAACCAAAGCGTTGGGCGGAGTACTAACCGGCAGGTGGAAGGCCATACT
GCAGGCCAAGCCAGCGGGCAGGATCAGGTACAGAGGATGGATCTCAATGG
CCAGGGACATCTCGGCCAGAACGGGAATAATAATGTTGGCAATCGCCACA
TTGGAGCTGAAGGCGGTCAGGAACACAGCCACCAGGATGACCACCAGTAA
GAGGACAGAGTTGGGCAGAACCTTCAATCCAATCAGAGCATTGCCAATCA
GCTTGGCCATGCCGCTCTGCTTGCTGCCTTCGGCCAAAGCGAAGCCACCG
CCAAGCAGGAACACCAGACCCCATGGCACCTTGGTCTGGATGAACTTCCA
GGTGATCAGCGATGGAGTGGGACCCGTGGGCACTGGACCACCGCGTCTGG
TGCAGTAGCGTAGGAAAGCATAATTGGCGGGCAGCATGAAGCACATGACG
ACGACAAAAATAGTGGGCATAGAGTTACGAATGTCCTTGGAATTCAGCAA
ATCGGCCCATCCCAAAAAGATGCCGGGCTTGCGGGTGAAGTACATCACAA
CCATAAAAATGAACAGAATCATCACTTGGATCTCGTGAATGGACATGGGA
CCCAGATCCTTGTAGCGCTGATCGATAACCTTTTTGGCGACATCGGCGCC
CTCTCGTCCCCTCTGGACTTCCTGTGCCTCCTTGCTCTTGGGACGCCACA
GACCCATGAAGTGCCATTGCAG
BS10212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3979-PB | 1773 | Indy-RB | 868..1773 | 922..17 | 4530 | 100 | Minus |
CG3979-PC | 1719 | Indy-RC | 814..1719 | 922..17 | 4530 | 100 | Minus |
CG3979-PA | 1719 | Indy-RA | 814..1719 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 1085..1991 | 922..16 | 4535 | 100 | Minus |
Indy-RA | 2484 | CG3979-RA | 988..1894 | 922..16 | 4535 | 100 | Minus |
Indy-RC | 2600 | CG3979-RC | 1104..2010 | 922..16 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18829579..18829963 | 308..692 | 1910 | 99.7 | Plus |
3L | 28110227 | 3L | 18829222..18829514 | 16..308 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 18830275..18830511 | 686..922 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:27:52 has no hits.
BS10212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:53 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-PA | 814..1719 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:21 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3979-PA | 814..1719 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:52 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 1104..2019 | 7..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:27 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 1104..2019 | 7..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:27 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18829220..18829513 | 15..307 | 99 | <- | Plus |
3L | 18829579..18829957 | 308..686 | 100 | <- | Plus |
3L | 18830276..18830511 | 687..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:52 Download gff for
BS10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18822320..18822613 | 15..307 | 99 | <- | Plus |
arm_3L | 18822679..18823057 | 308..686 | 100 | <- | Plus |
arm_3L | 18823376..18823611 | 687..922 | 100 | | Plus |
BS10212.5prime Sequence
861 bp (831 high quality bases) assembled on 2006-04-19
> BS10212.5prime
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCC
BS10212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3979-PB | 1773 | Indy-RB | 55..899 | 17..861 | 4225 | 100 | Plus |
CG3979-PC | 1719 | Indy-RC | 1..845 | 17..861 | 4225 | 100 | Plus |
CG3979-PA | 1719 | Indy-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 272..1116 | 17..861 | 4225 | 100 | Plus |
Indy-RA | 2484 | CG3979-RA | 175..1019 | 17..861 | 4225 | 100 | Plus |
Indy-RC | 2600 | CG3979-RC | 291..1135 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18830480..18830734 | 861..607 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 18830839..18831035 | 607..411 | 970 | 99.5 | Minus |
3L | 28110227 | 3L | 18831093..18831242 | 417..268 | 750 | 100 | Minus |
3L | 28110227 | 3L | 18831494..18831621 | 152..25 | 640 | 100 | Minus |
3L | 28110227 | 3L | 18831311..18831427 | 268..152 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:36:57 has no hits.
BS10212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:54 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:23 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3979-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:45 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 284..1135 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:11 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 284..1135 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:11 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18831495..18831621 | 25..151 | 100 | <- | Minus |
3L | 18830480..18830734 | 607..861 | 100 | <- | Minus |
3L | 18830840..18831028 | 418..606 | 100 | <- | Minus |
3L | 18831093..18831241 | 269..417 | 100 | <- | Minus |
3L | 18831311..18831427 | 152..268 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:45 Download gff for
BS10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18824411..18824527 | 152..268 | 100 | <- | Minus |
arm_3L | 18824595..18824721 | 25..151 | 100 | <- | Minus |
arm_3L | 18823580..18823834 | 607..861 | 100 | <- | Minus |
arm_3L | 18823940..18824128 | 418..606 | 100 | <- | Minus |
arm_3L | 18824193..18824341 | 269..417 | 100 | <- | Minus |
BS10212.complete Sequence
1751 bp assembled on 2007-10-17
GenBank Submission: FJ636598
> BS10212.complete
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCCAGAGGGGACGAGA
GGGCGCCGATGTCGCCAAAAAGGTTATCGATCAGCGCTACAAGGATCTGG
GTCCCATGTCCATTCACGAGATCCAAGTGATGATTCTGTTCATTTTTATG
GTTGTGATGTACTTCACCCGCAAGCCCGGCATCTTTTTGGGATGGGCCGA
TTTGCTGAATTCCAAGGACATTCGTAACTCTATGCCCACTATTTTTGTCG
TCGTCATGTGCTTCATGCTGCCCGCCAATTATGCTTTCCTACGCTACTGC
ACCAGACGCGGTGGTCCAGTGCCCACGGGTCCCACTCCATCGCTGATCAC
CTGGAAGTTCATCCAGACCAAGGTGCCATGGGGTCTGGTGTTCCTGCTTG
GCGGTGGCTTCGCTTTGGCCGAAGGCAGCAAGCAGAGCGGCATGGCCAAG
CTGATTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTGTCCT
CTTACTGGTGGTCATCCTGGTGGCTGTGTTCCTGACCGCCTTCAGCTCCA
ATGTGGCGATTGCCAACATTATTATTCCCGTTCTGGCCGAGATGTCCCTG
GCCATTGAGATCCATCCTCTGTACCTGATCCTGCCCGCTGGCTTGGCCTG
CAGTATGGCCTTCCACCTGCCGGTTAGTACTCCGCCCAACGCTTTGGTTG
CTGGCTATGCCAACATTAGGACGAAGGACATGGCCATTGCTGGAATCGGT
CCGACCATCATTACCATCATCACCCTGTTTGTTTTCTGCCAAACCTGGGG
CCTGGTCGTCTATCCGAACCTTAACTCGTTCCCCGAATGGGCTCAGATTT
ATGCCGCGGCAGCACTGGGAAACAAGACGCACTAGAAGCTTTCTAGACCA
T
BS10212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 1719 | CG3979-PD | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Indy-RA | 1719 | CG3979-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Indy-RC | 1719 | CG3979-PC | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 272..1991 | 17..1736 | 8600 | 100 | Plus |
Indy-RA | 2484 | CG3979-RA | 175..1894 | 17..1736 | 8600 | 100 | Plus |
Indy-RC | 2600 | CG3979-RC | 291..2010 | 17..1736 | 8600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18830275..18830734 | 1066..607 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 18829579..18829963 | 1444..1060 | 1910 | 99.7 | Minus |
3L | 28110227 | 3L | 18829222..18829514 | 1736..1444 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 18830839..18831035 | 607..411 | 970 | 99.5 | Minus |
3L | 28110227 | 3L | 18831093..18831242 | 417..268 | 750 | 100 | Minus |
3L | 28110227 | 3L | 18831494..18831621 | 152..25 | 640 | 100 | Minus |
3L | 28110227 | 3L | 18831311..18831427 | 268..152 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:28 has no hits.
BS10212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:15 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 1..1719 | 17..1735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:32 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 147..1882 | 9..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:45 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 291..2009 | 17..1735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:37 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 154..1872 | 17..1735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:42 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 291..2009 | 17..1735 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:42 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18829223..18829513 | 1445..1735 | 100 | <- | Minus |
3L | 18829579..18829957 | 1066..1444 | 100 | <- | Minus |
3L | 18830276..18830734 | 607..1065 | 100 | <- | Minus |
3L | 18830840..18831028 | 418..606 | 100 | <- | Minus |
3L | 18831093..18831241 | 269..417 | 100 | <- | Minus |
3L | 18831311..18831427 | 152..268 | 100 | <- | Minus |
3L | 18831495..18831628 | 17..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:45 Download gff for
BS10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18824411..18824527 | 152..268 | 100 | <- | Minus |
arm_3L | 18824595..18824728 | 17..151 | 97 | | Minus |
arm_3L | 18822323..18822613 | 1445..1735 | 100 | <- | Minus |
arm_3L | 18822679..18823057 | 1066..1444 | 100 | <- | Minus |
arm_3L | 18823376..18823834 | 607..1065 | 100 | <- | Minus |
arm_3L | 18823940..18824128 | 418..606 | 100 | <- | Minus |
arm_3L | 18824193..18824341 | 269..417 | 100 | <- | Minus |
BS10212.pep Sequence
Translation from 16 to 1734
> BS10212.pep
MEIEIGEQPQPPVKCSNFFANHWKGLVVFLVPLLCLPVMLLNEGAEFRCM
YLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVM
FMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWI
SNAACTAMMCPIIQAVLEELQAQGVCKINHEPQYQIVGGNKKNNEDEPPY
PTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDF
PTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKEAQEVQRGREGADVA
KKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSK
DIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQ
TKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVI
LVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFH
LPVSTPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYP
NLNSFPEWAQIYAAAALGNKTH*
BS10212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-PD | 572 | CG3979-PD | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PA | 572 | CG3979-PA | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PC | 572 | CG3979-PC | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PB | 590 | CG3979-PB | 19..590 | 1..572 | 2994 | 100 | Plus |
CG33934-PE | 556 | CG33934-PE | 16..555 | 14..559 | 1531 | 51.3 | Plus |