Clone BS10215 Report

Search the DGRC for BS10215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG3542-RA
Protein status:BS10215.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10215.3prime Sequence

930 bp (857 high quality bases) assembled on 2006-04-19

> BS10215.3prime
ATGGTCTAGAAAGCTTTCACTCGTCGAGCTGCTCGCTGAGTTGGGCTAGA
AGAGCCGCTCGCTTCGATTCCAGCTCGCCGTCACTTAACGTCAGCTCCTC
GTTTCGCGATCCAGACGACTCGACGGACTGGGCAGGACTAAGGGGCGTGC
CGGATCGATTGTGCCTGTTGTGTCGCTTGTCCTTCTTAGCTCGCTTCTCC
TTCTTCTTTTTCTTTGCGGGTGAGTGCGAGTTTGAGTCGTTCTGAAGTAG
AGCTTGAGTTCCCGGCGATTGAATGCCTGGAACATCCGATTCGCAGGAGG
AACCTCGCAGTTTGTTCTTGCGCTTCTTTTTCTTCTTCAGCAATTTTTCG
CTCTCGATGCTGCCAATTGAGGTCAGGGAATGCGATCGTGTCTTGGAGCG
CCTTCGCTTGGACTTCTCCACTTCTATATGCTCATTCTCGATGTCTGATC
TCGAGACGGACCGTACTCGTTTTTTGTGCTTCTTGTTTTTCTTAGATTTT
CGTGATCGCGAGTGATGATGGCTGCACGCATCTTCGCTTTCCTTAACAAA
GTCCTCCCAGATCTTCTCCACACCGATTTCTTTTTCATAAAGGGCAAATG
CTTCAAGGTGTTCTACCAGCTTCTTGGCGCTCTCATAGGGTTCGGCCACT
GAGACGTTCGCCTCCAGCCATTCGTTTTTAATTTCATTTTCTAGTTTCCG
CAACCTTCGCACCTCCTCTTTCATCCGTTCCTTTTCAATGGCCTCGGCCT
TTTCCAGCAGGGAGTTGTATGTGAGCTTCACATTTCCCGCGTCCAGGCTG
GCTGACCGCTTATCTTCACACACGACCGTGGCAAAGTCCTCGAAGGATGT
CTTCGCTTGGACACAAATGCCTTTTCCTTGAGGATCTCCCTTATTATTTT
TTTCTCATCATGGAAGCGGGCTTTCAGGTT

BS10215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 2421 CG3542-RA 1575..2421 863..17 4235 100 Minus
CG3542-PB 2274 CG3542-RB 1428..2274 863..17 4235 100 Minus
CG3542-PA 2421 CG3542-RA 1507..1574 930..863 340 100 Minus
CG3542-PB 2274 CG3542-RB 1360..1427 930..863 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 1669..2583 930..17 4550 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3025255..3025622 750..383 1840 100 Minus
2L 23513712 2L 3025832..3026116 301..17 1425 100 Minus
2L 23513712 2L 3025009..3025192 930..748 870 99.5 Minus
2L 23513712 2L 3025688..3025769 383..302 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:34:26 has no hits.

BS10215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:58 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PB 1360..2274 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:27 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PB 1360..2274 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:32 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1669..2589 12..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:45 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1669..2589 12..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:45 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3025689..3025769 302..382 100 -> Minus
2L 3025009..3025191 749..930 99 -> Minus
2L 3025257..3025622 383..748 100 -> Minus
2L 3025832..3026122 12..301 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:32 Download gff for BS10215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3025009..3025191 749..930 99 -> Minus
arm_2L 3025257..3025622 383..748 100 -> Minus
arm_2L 3025689..3025769 302..382 100 -> Minus
arm_2L 3025832..3026122 12..301 99   Minus

BS10215.5prime Sequence

965 bp (790 high quality bases) assembled on 2006-04-19

> BS10215.5prime
GAAGTTATCAGTCGACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAG
CGCCACCGGGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCG
CAGTTTCCACCACCCGGATTTGGGGCCCCACCCCCACCGGAGCTGGCCGC
CGCCTTCGGGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGC
CGGACGGACGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGG
GAGAAGCCGGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTG
TCCCTGGAAGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACG
TGGCCACCAAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATG
AAGGCCAAGGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGC
AGCCATGACATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGG
CTAGTATTCTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCT
GAGATCCACTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGC
GATGGATCAGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAAC
AAAATGCTAAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGAT
AAACGCGAGGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGT
GCCATCAAATGCGAACTGGGACCAGTGTGTGAAAATCATATCAAAGGATC
CGCGATACGCAGCCTTCAAAAATCTGAACGAGCGCAAGCAAACATTTCAT
GCCTACAAGACGCAGAAGATTAAGGACGAGCGCGAGGAGTCTCGCTTAAA
AGCAAGAAGGCAAAGAGGACTTGGAGCAGTTTCTTATGGTCAGCGATAAG
ATGAACTCGCAGATG

BS10215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 2421 CG3542-RA 1..887 17..903 4385 99.7 Plus
CG3542-PB 2274 CG3542-RB 1..740 164..903 3650 99.7 Plus
CG3542-PA 2421 CG3542-RA 898..951 912..965 195 94.4 Plus
CG3542-PB 2274 CG3542-RB 751..804 912..965 195 94.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 163..1113 17..965 4630 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3023388..3023794 17..423 2035 100 Plus
2L 23513712 2L 3024142..3024453 656..965 1385 97.8 Plus
2L 23513712 2L 3023854..3024090 424..660 1170 99.6 Plus
Blast to na_te.dros performed 2015-02-04 04:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 1268..1298 611..641 110 83.9 Plus
TART-C 11124 TART-C TARTC 11124bp 2721..2751 611..641 110 83.9 Plus

BS10215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:32:59 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PA 1..951 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:29 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PA 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:01 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 155..1113 7..965 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:01 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 155..1113 7..965 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:01 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3023854..3024086 424..656 100 -> Plus
2L 3023380..3023794 7..423 99 -> Plus
2L 3024143..3024453 657..965 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:01 Download gff for BS10215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3023380..3023794 7..423 99 -> Plus
arm_2L 3023854..3024086 424..656 100 -> Plus
arm_2L 3024143..3024453 657..965 97   Plus

BS10215.complete Sequence

2453 bp assembled on 2007-11-30

GenBank Submission: FJ636600

> BS10215.complete
GAAGTTATCAGTCGACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAG
CGCCACCGGGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCG
CAGTTTCCACCACCCGGATTTGGGGCCCCACCCCCACCGGAGCTGGCCGC
CGCCTTCGGGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGC
CGGACGGACGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGG
GAGAAGCCGGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTG
TCCCTGGAAGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACG
TGGCCACCAAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATG
AAGGCCAAGGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGC
AGCCATGACATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGG
CTAGTATTCTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCT
GAGATCCACTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGC
GATGGATCAGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAAC
AAAATGCTAAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGAT
AAACGCGAGGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGT
GCCATCAAATGCGAACTGGGACCAGTGTGTGAAAATCATATCAAAGGATC
CGCGATACGCAGCCTTCAAAAATCTGAACGAGCGCAAGCAAACATTCAAT
GCCTACAAGACGCAGAAGATTAAGGACGAGCGCGAGGAGTCTCGCTTAAA
AGCCAAGAAGGCAAAAGAGGACTTGGAGCAGTTCCTTATGTCCAGCGATA
AGATGAACTCGCAGATGAAATATTTTCGTTGTGAAGAAGTATTTGCCGGA
ACGCGAACATGGACCGCGGTGCCGGAACCGGATCGGCGAGATATATACGA
GGACTGTATATTTAATTTAGCGAAGCGAGAGAAGGAAGAAGCGCGGTTGC
TGAAAAAACGAAACATGAAGGTTCTGGGCGAGCTGCTAGAGTCGATGACT
TCAATCAATCATGCCACCACCTGGTCAGAGGCTCAGGTTATGCTATTGGA
CAACGTAGCATTTAAGAATGATGTGACTCTGCTCGGAATGGACAAGGAGG
ACGCCCTAATTGTCTTCGAGGAGCACATTCGCACCTTGGAAAAGGAGGAG
GACGAGGAACGTGAGCGGGAAAAGAAGCGCATGAAGCGACAGCAGCGCAA
AAACAGGGACTCCTTTCTTGCGCTGCTCGACTCCCTGCATGAAGAGGGAA
AGCTCACTTCCATGTCGCTGTGGGTGGAGCTGTATCCCATCATATCAGCC
GATTTGCGATTCTCCGCTATGCTCGGCCAGAGCGGGTCTACACCCCTGGA
TCTTTTCAAGTTCTATGTGGAAAACCTGAAAGCCCGCTTCCATGATGAGA
AAAAAATAATAAGGGAGATCCTCAAGGAAAAGGCATTTGTTGTCCAAGCG
AAGACATCCTTCGAGGACTTTGCCACGGTCGTGTGTGAAGATAAGCGGTC
AGCCAGCCTGGACGCGGGAAATGTGAAGCTCACATACAACTCCCTGCTGG
AAAAGGCCGAGGCCATTGAAAAGGAACGGATGAAAGAGGAGGTGCGAAGG
TTGCGGAAACTAGAAAATGAAATTAAAAACGAATGGCTGGAGGCGAACGT
CTCAGTGGCCGAACCCTATGAGAGCGCCAAGAAGCTGGTAGAACACCTTG
AAGCATTTGCCCTTTATGAAAAAGAAATCGGTGTGGAGAAGATCTGGGAG
GACTTTGTTAAGGAAAGCGAAGATGCGTGCAGCCATCATCACTCGCGATC
ACGAAAATCTAAGAAAAACAAGAAGCACAAAAAACGAGTACGGTCCGTCT
CGAGATCAGACATCGAGAATGAGCATATAGAAGTGGAGAAGTCCAAGCGA
AGGCGCTCCAAGACACGATCGCATTCCCTGACCTCAATTGGCAGCATCGA
GAGCGAAAAATTGCTGAAGAAGAAAAAGAAGCGCAAGAACAAACTGCGAG
GTTCCTCCTGCGAATCGGATGTTCCAGGCATTCAATCGCCGGGAACTCAA
GCTCTACTTCAGAACGACTCAAACTCGCACTCACCCGCAAAGAAAAAGAA
GAAGGAGAAGCGAGCTAAGAAGGACAAGCGACACAACAGGCACAATCGAT
CCGGCACGCCCCTTAGTCCTGCCCAGTCCGTCGAGTCGTCTGGATCGCGA
AACGAGGAGCTGACGTTAAGTGACGGCGAGCTGGAATCGAAGCGAGCGGC
TCTTCTAGCCCAACTCAGCGAGCAGCTCGACGAGTGAAAGCTTTCTAGAC
CAT

BS10215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2421 CG3542-PA 1..2421 17..2437 12105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 163..2583 17..2437 12105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3024142..3025192 656..1706 5255 100 Plus
2L 23513712 2L 3023388..3023794 17..423 2035 100 Plus
2L 23513712 2L 3025255..3025622 1704..2071 1840 100 Plus
2L 23513712 2L 3025832..3026116 2153..2437 1425 100 Plus
2L 23513712 2L 3023854..3024090 424..660 1170 99.6 Plus
2L 23513712 2L 3025688..3025769 2071..2152 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:11:08 has no hits.

BS10215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:18 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1..2421 17..2437 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:36 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 146..2580 7..2442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:32 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 163..2582 17..2436 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:40 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 154..2573 17..2436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:50 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 163..2582 17..2436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:50 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3023388..3023794 17..423 100 -> Plus
2L 3023854..3024086 424..656 100 -> Plus
2L 3024143..3025191 657..1705 100 -> Plus
2L 3025257..3025622 1706..2071 100 -> Plus
2L 3025689..3025769 2072..2152 100 -> Plus
2L 3025832..3026115 2153..2436 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:32 Download gff for BS10215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3023388..3023794 17..423 100 -> Plus
arm_2L 3023854..3024086 424..656 100 -> Plus
arm_2L 3024143..3025191 657..1705 100 -> Plus
arm_2L 3025257..3025622 1706..2071 100 -> Plus
arm_2L 3025689..3025769 2072..2152 100 -> Plus
arm_2L 3025832..3026115 2153..2436 100   Plus

BS10215.pep Sequence

Translation from 16 to 2436

> BS10215.pep
MNVPPSVGNGGAPPGRGIGYTPPGAIVPQFPPPGFGAPPPPELAAAFGVM
ATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEY
RSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSS
SLAGMVPPAALASILPAALPVAPRLPTPEIHSPLTPSSNENSSSAMDQAM
AATLAAIEVPQQNAKKDDKSESAVVFKDKREAIESFKELLRDRNVPSNAN
WDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAK
EDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWTAVPEPDRRDIYEDCIFN
LAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFK
NDVTLLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSF
LALLDSLHEEGKLTSMSLWVELYPIISADLRFSAMLGQSGSTPLDLFKFY
VENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVVCEDKRSASLDA
GNVKLTYNSLLEKAEAIEKERMKEEVRRLRKLENEIKNEWLEANVSVAEP
YESAKKLVEHLEAFALYEKEIGVEKIWEDFVKESEDACSHHHSRSRKSKK
NKKHKKRVRSVSRSDIENEHIEVEKSKRRRSKTRSHSLTSIGSIESEKLL
KKKKKRKNKLRGSSCESDVPGIQSPGTQALLQNDSNSHSPAKKKKKEKRA
KKDKRHNRHNRSGTPLSPAQSVESSGSRNEELTLSDGELESKRAALLAQL
SEQLDE*

BS10215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 806 CG3542-PA 1..806 1..806 4140 100 Plus
CG42724-PK 1123 CG42724-PK 195..892 1..711 213 20.8 Plus
CG42724-PC 1123 CG42724-PC 195..892 1..711 213 20.8 Plus
CG42724-PM 761 CG42724-PM 441..720 54..367 197 23.9 Plus
CG42724-PI 763 CG42724-PI 441..717 54..364 196 24.1 Plus
CG42724-PM 761 CG42724-PM 195..718 1..517 184 22 Plus