Clone Sequence Records
BS10218.3prime Sequence
927 bp (868 high quality bases) assembled on 2006-04-19
> BS10218.3prime
ATGGTCTAGAAAGCTTCTAGTTGTTCTTGTGGTCCTCGAAGTAGGAAGGT
AGCTCTGCTTGGAGGCGCAACAAACGGACGTAGGTCAGCAGTTTCCATTC
GCTCAGCGGCTGATCCTCGGGATGCACGAAGGTGGACATGTATGTGACTA
GCTCCTGAGATCCGTCCTGGTCGAGATCTGCGACAAGCATCGAGTGGTCC
TGGTTGTTCAGATCCGGTTGGCACACCACCTCCTTGCGGTCGTGACGGCA
AAACTGGACGATGTTGCTTCGCGAGGTGTTCTCAATGTGGGTATCGGCCC
CCACGAAAACCACTAGCAGCACGGTTTCTGTAATCATGTTCATTTTGTAG
CTTCCGCCGGGAGAGATTCCACTCGATTTGGTCAGGTTCATAGTTGAAGA
TGGCAGTCCGAATGATTCCCTCTTCTGCTTCACATGCTCGAAGAAATCGA
ACTCCTGGTGAGCCGGTTGAAACTCTTGATCTTTCGCCTCCGTGCTTCTT
CTTAGACGTTGGTGCTGCTGTTGTTTCTTTGCCTGAGCCTGAGACTTTTC
TTTATCCTTGATGGCATTCATGTTCTTGGTGTGATTGTTGCTGCCACTCT
TCTGCACATTGTTGCTGTTACTGCTGGCGGAAGTCTGTTTGGAAGGCTTA
GCCAAGCCATGCCACTTCCAGAACTTCATCACAAAGCCGGACATTTGCGA
CTTGGTATTCTTGAAGTGCCATTCGGCGGGCTTCATCCCGTACATTCTGC
TCGTGATGAAGTTTTCCACCACATGGGGTTTGCCATCGCGGACTTCACTG
AGAACAAAGGTAACATTGCAATCCTCCGGACAGCGTCCTCGGTTCTCCAC
CACGAGTTCCCGTCCACTTAAAGAATATATGTTCCTCTGGGCATCCAGTT
CCCGCCGCTGGGCATGGTTTCTATGCT
BS10218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PA | 2280 | CG3618-RA | 1370..2280 | 927..17 | 4505 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 1482..2393 | 927..16 | 4530 | 99.8 | Minus |
| CG3618-RA | 2589 | CG3618-RA | 1512..2423 | 927..16 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20813519..20814430 | 16..927 | 4530 | 99.8 | Plus |
Blast to na_te.dros performed 2015-01-31 16:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2504 | 626..452 | 193 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 621..456 | 168 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6912 | 626..493 | 155 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2509 | 626..493 | 131 | 58.5 | Minus |
BS10218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:04 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1370..2280 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:36 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1370..2280 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:21 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1512..2432 | 9..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:02 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1512..2432 | 9..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:02 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20813510..20814430 | 9..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:21 Download gff for
BS10218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20806610..20807530 | 9..927 | 99 | | Plus |
BS10218.5prime Sequence
958 bp (874 high quality bases) assembled on 2006-04-19
> BS10218.5prime
GAAGTTATCAGTCGACATGCTGCACTCCGAATTATTGCCCCCCGCTGGCC
ACCAGGGCATCTATGCTCCACTAAGTCAGGCAATGAGCGATTCTGAATCC
GACGAGGAAATTGAGATCCACAACGCCGCCAATCATCGACAAAAATTGCA
ACAGAAACTTAAGCAAGCTCATCAGCCCAGTCCGCCGGAGCAGCTCCAAG
CCCAAAGGATACGCATCCCGCCGAACACTCTAGCCCTGAAATCACCACAT
ACGAGAGCATCTCCCACGGCCACCAGGATTGTGACTCGAAAACCTTCCGG
GAGTACCCAGAAATTCCAACTGGAGGGCAGTAGCTACGCTACCAATATGC
AGAATACTTTCCGTTCCGTCATGTTGAGCGATAATGGTGGAGTGGGATCG
GAGTTGTCCCACTTCAACAGTGATTTCGATGCGAATGCAGACAATGTAGC
CATCTTGGGGGACCATAATCAGACCGGCGAGGATTTGTCCAAAAGAACCC
CCATGTCACCGGCAAGGAAATGCTGTTTCATAGGCAGCCTGCTCCTGTGC
TTCCTCGCCGTCGTATCCTTTGTATGGCTGGTGCCCTGCGGTAATCCTGA
TGGCACTGGATCCTGTCCAGCCGTCGGAGACCGGATAAAGACCCACAACT
GGTTCAATAATTACACAAAGGCGGAACTTAAGGGAGGAATCAATGTGGTC
GGTGGTCTAAGAGCCTGGGAGAACAACCTGATATTTATGTACCGCGGGGA
TGCCTTTTTCCCGGAATTCCGACCAGGTAACGAGCGGCGTAATGGCATCA
TCTGTTTGATTGGCTCCTCGGGAGCTGTGGCTTGGTTTGTGGAGATGGTT
GATGAGCCTGTGGCCCTGGACTGCACCCTCATAGACATAGATGGCAATGG
GAAACCAGCTTGCTTGGTACTGGATGAGTATGGCGAACTTGGAGCCATTC
ATCCCGTC
BS10218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PA | 2280 | CG3618-RA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 113..1054 | 17..958 | 4710 | 100 | Plus |
| CG3618-RA | 2589 | CG3618-RA | 143..1084 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20814858..20815799 | 958..17 | 4710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:31 has no hits.
BS10218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:05 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:37 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:15 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..1084 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:02 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..1084 | 17..958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:02 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20814858..20815807 | 9..958 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:15 Download gff for
BS10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20807958..20808907 | 9..958 | 99 | | Minus |
BS10218.complete Sequence
2312 bp assembled on 2007-11-30
GenBank Submission: FJ636601
> BS10218.complete
GAAGTTATCAGTCGACATGCTGCACTCCGAATTATTGCCCCCCGCTGGCC
ACCAGGGCATCTATGCTCCACTAAGTCAGGCAATGAGCGATTCTGAATCC
GACGAGGAAATTGAGATCCACAACGCCGCCAATCATCGACAAAAATTGCA
ACAGAAACTTAAGCAAGCTCATCAGCCCAGTCCGCCGGAGCAGCTCCAAG
CCCAAAGGATACGCATCCCGCCGAACACTCTAGCCCTGAAATCACCACAT
ACGAGAGCATCTCCCACGGCCACCAGGATTGTGACTCGAAAACCTTCCGG
GAGTACCCAGAAATTCCAACTGGAGGGCAGTAGCTACGCTACCAATATGC
AGAATACTTTCCGTTCCGTCATGTTGAGCGATAATGGTGGAGTGGGATCG
GAGTTGTCCCACTTCAACAGTGATTTCGATGCGAATGCAGACAATGTAGC
CATCTTGGGGGACCATAATCAGACCGGCGAGGATTTGTCCAAAAGAACCC
CCATGTCACCGGCAAGGAAATGCTGTTTCATAGGCAGCCTGCTCCTGTGC
TTCCTCGCCGTCGTATCCTTTGTATGGCTGGTGCCCTGCGGTAATCCTGA
TGGCACTGGATCCTGTCCAGCCGTCGGAGACCGGATAAAGACCCACAACT
GGTTCAATAATTACACAAAGGCGGAACTTAAGGGAGGAATCAATGTGGTC
GGTGGTCTAAGAGCCTGGGAGAACAACCTGATATTTATGTACCGCGGGGA
TGCCTTTTTCCCGGAATTCCGACCAGGTAACGAGCGGCGTAATGGCATCA
TCTGTTTGATTGGCTCCTCGGGAGCTGTGGCTTGGTTTGTGGAGATGGTT
GATGAGCCTGTGGCCCTGGACTGCACCCTCATAGACATAGATGGCAATGG
GAAACCAGCTTGCTTGGTACTGGATGAGTATGGCGAACTTGGAGCCATTC
ATCCCGTCTCTGGTGAATGGATCTGGTGGCATAAGGAGCGATCAGCCCGA
AAAGTTGATGCCTATGACTTCCCAGTTATCCTGCCTGATCTGGATGCAGA
TGGAGTGCTGGACCTCCTGCTCGTGACTAGTTTGTCACTGGTACAGCGCA
CTAAATCGCTTGCCCAGCTCAAACATGAATCTCCGGAAAAACTAGAGGCT
CGCAATGTGCTGCGCATGCTGTCGGGCAGAAGAGGAGCACCTATTGGTGA
TGGCTTCACCATTCACGACTGCGACACTCTCAGCAACTTGAAGCTCGAGG
CGGGCAACGTGAGCTTCACCTGTCAGCGAGTCAATGACACAGAGCAGCAG
CGTTCCAAGAGTCTGGCCGAGCTGTATGCCCTGATCACCAACAAATCTAT
TGTAAGCCAACGACTAGGCACCTCAAAGATCTCCCAGCATAGGAACCATG
GCCAGCGGCGGGAACTGGATGCCCAGAGGAACATATATTCTTTAAGTGGA
CGGGAACTCGTGGTGGAGAACCGAGGACGCTGTCCGGAGGATTGCAATGT
TACCTTTGTTCTCAGTGAAGTCCGCGATGGCAAACCCCATGTGGTGGAAA
ACTTCATCACGAGCAGAATGTACGGGATGAAGCCCGCCGAATGGCACTTC
AAGAATACCAAGTCGCAAATGTCCGGCTTTGTGATGAAGTTCTGGAAGTG
GCATGGCTTGGCTAAGCCTTCCAAACAGACTTCCGCCAGCAGTAACAGCA
ACAATGTGCAGAAGAGTGGCAGCAACAATCACACCAAGAACATGAATGCC
ATCAAGGATAAAGAAAAGTCTCAGGCTCAGGCAAAGAAACAACAGCAGCA
CCAACGTCTAAGAAGAAGCACGGAGGCGAAAGATCAAGAGTTTCAACCGG
CTCACCAGGAGTTCGATTTCTTCGAGCATGTGAAGCAGAAGAGGGAATCA
TTCGGACTGCCATCTTCAACTATGAACCTGACCAAATCGAGTGGAATCTC
TCCCGGCGGAAGCTACAAAATGAACATGATTACAGAAACCGTGCTGCTAG
TGGTTTTCGTGGGGGCCGATACCCACATTGAGAACACCTCGCGAAGCAAC
ATCGTCCAGTTTTGCCGTCACGACCGCAAGGAGGTGGTGTGCCAACCGGA
TCTGAACAACCAGGACCACTCGATGCTTGTCGCAGATCTCGACCAGGACG
GATCTCAGGAGCTAGTCACATACATGTCCACCTTCGTGCATCCCGAGGAT
CAGCCGCTGAGCGAATGGAAACTGCTGACCTACGTCCGTTTGTTGCGCCT
CCAAGCAGAGCTACCTTCCTACTTCGAGGACCACAAGAACAACTAGAAGC
TTTCTAGACCAT
BS10218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2280 | CG3618-PB | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| CG3618-RA | 2280 | CG3618-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 113..2393 | 17..2297 | 11405 | 100 | Plus |
| CG3618-RA | 2589 | CG3618-RA | 143..2423 | 17..2297 | 11405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20813519..20815799 | 2297..17 | 11405 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2504 | 1687..1861 | 193 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6912 | 1687..1820 | 155 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2509 | 1687..1820 | 131 | 58.5 | Plus |
BS10218.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:19 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1..2280 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:38 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 140..2429 | 17..2304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:16 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..2422 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:00 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 140..2419 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:12 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..2422 | 17..2296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:12 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20813520..20815799 | 17..2296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:16 Download gff for
BS10218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20806620..20808899 | 17..2296 | 100 | | Minus |
BS10218.pep Sequence
Translation from 16 to 2295
> BS10218.pep
MLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNAANHRQKLQQKLKQ
AHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATRIVTRKPSGSTQKF
QLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDFDANADNVAILGDH
NQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVWLVPCGNPDGTGSC
PAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENNLIFMYRGDAFFPE
FRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCTLIDIDGNGKPACL
VLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPVILPDLDADGVLDL
LLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSGRRGAPIGDGFTIH
DCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELYALITNKSIVSQRL
GTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRGRCPEDCNVTFVLS
EVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSGFVMKFWKWHGLAK
PSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQAQAKKQQQHQRLRR
STEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMNLTKSSGISPGGSY
KMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDRKEVVCQPDLNNQD
HSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLLTYVRLLRLQAELP
SYFEDHKNN*
BS10218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PB | 759 | CG3618-PB | 1..759 | 1..759 | 4001 | 100 | Plus |
| CG3618-PA | 759 | CG3618-PA | 1..759 | 1..759 | 4001 | 100 | Plus |
