Clone BS10219 Report

Search the DGRC for BS10219

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG8010-RA
Protein status:BS10219.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10219.3prime Sequence

864 bp (805 high quality bases) assembled on 2006-04-19

> BS10219.3prime
ATGGTCTAGAAAGCTTTCAGACTCTGAGTGTCATGGCATCGGCCTCGACT
CCCAGCTTCTGTTGCTCCAGCTCCAGCTGCATCTGCTGCTGCTCCTGCTG
GAGCTCTTGATCCTCCTCCGTCTCCTCCAGAACCTCGCTCCTCTCCTCGT
CACTGCTGCTTGGCGCTGGCGAGCTGAGCGTCACATCGCTGCCCAGGGCC
AACAGTGGCTGGACATCCATGTCGGGAGCAAACTGCTTCAGCAGTTGTCC
CACCACGGTGCACAGTCCCATCAGACGCTTCTCCATTCGCTGCTCGTAGC
GACGGCGGTGCCTGTAATACTTCTCCTTTTCGCTGAGACCTTTGCGATGG
TGTTTCCTTAACAATTTACGCGCCTTCGGGATAGGCTTCTCCGGCTTCTC
GCTCTTCACAGCCGTTGCCGTGGGCACTGTCGCCTCCTCGAAGTCGTTGT
ATCTGCTGTTGGATAGCGACACCTCGCCGCCAATCATCACCGGGCCGCAT
TCCATTTCGTGGCAGTTGGTGTTGCTCAGCATGCACACATCCTCGCCGTC
GCCAACTGCCGCATCCTTGCGCGCCGTCGCCTCGGCCAGCAGCCTGTCCA
GCTCATCGTTGTTGCTGTGGCCACTGTTCCCGTGGCAGGGCGACGTGTTG
GACTCGTCCATGTCATCGGTGTCGCATCCGTTGGGCGGCGAGCGTTCGCC
AAAGTTGTGGTCATTGAGCACGCCCAGCATGAGTGGCGAGAGTTGCGCCT
CGTCGCAGGAGTAGACACTGGCGATGGCCAGGTTATTGTTCGGCTGCTCC
ACATTCGGCTCCTTGAGCGCGTACGAGTGCAGGTCGGCGGTCTTCTGGTT
CATGTAGGCGTGGA

BS10219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-PA 1152 CG8010-RA 305..1152 864..17 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-RA 1633 CG8010-RA 485..1332 864..17 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19267317..19267870 311..864 2770 100 Plus
X 23542271 X 19266957..19267254 17..314 1490 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:47:54 has no hits.

BS10219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:06 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-PA 306..1152 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:39 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-PA 306..1152 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:52 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 486..1334 13..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:54 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 486..1334 13..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:54 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19266955..19267251 13..311 99 <- Plus
X 19267318..19267869 312..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:52 Download gff for BS10219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19160988..19161284 13..311 99 <- Plus
arm_X 19161351..19161902 312..863 100   Plus

BS10219.5prime Sequence

815 bp (805 high quality bases) assembled on 2006-04-19

> BS10219.5prime
GAAGTTATCAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCA
AGAAGTGGTCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCG
GCGGACGAGCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAA
AAAATTCAAGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTAC
GCAAGCAGTGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAAC
ACACTGGGCGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGA
ATGGGAGTTTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCG
ACCTGCACTCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAAT
AACCTGGCCATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCC
ACTCATGCTGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGC
CCAACGGATGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGC
CACGGGAACAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGC
CGAGGCGACGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGT
GCATGCTGAGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATG
ATTGGCGGCGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGA
GGCGACAGTGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGC
CTATCCCGAAAGCGC

BS10219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-PA 1152 CG8010-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-RA 1633 CG8010-RA 179..979 15..815 3990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19267376..19268040 815..151 3310 99.8 Minus
X 23542271 X 19268505..19268598 150..57 470 100 Minus
X 23542271 X 19268676..19268718 57..15 215 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:26:09 has no hits.

BS10219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:07 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:40 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:13 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 169..979 3..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:57:15 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 169..979 3..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:57:15 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19267376..19268040 151..815 99 <- Minus
X 19268505..19268598 57..150 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:13 Download gff for BS10219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19161409..19162073 151..815 99 <- Minus
arm_X 19162538..19162631 57..150 100 <- Minus

BS10219.complete Sequence

1184 bp (1184 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636602

> BS10219.complete
GAAGTTATCAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCA
AGAAGTGGTCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCG
GCGGACGAGCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAA
AAAATTCAAGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTAC
GCAAGCAGTGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAAC
ACACTGGGCGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGA
ATGGGAGTTTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCG
ACCTGCACTCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAAT
AACCTGGCCATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCC
ACTCATGCTGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGC
CCAACGGATGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGC
CACGGGAACAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGC
CGAGGCGACGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGT
GCATGCTGAGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATG
ATTGGCGGCGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGA
GGCGACAGTGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGC
CTATCCCGAAGGCGCGTAAATTGTTAAGGAAACACCATCGCAAAGGTCTC
AGCGAAAAGGAGAAGTATTACAGGCACCGCCGTCGCTACGAGCAGCGAAT
GGAGAAGCGTCTGATGGGACTGTGCACCGTGGTGGGACAACTGCTGAAGC
AGTTTGCTCCCGACATGGATGTCCAGCCACTGTTGGCCCTGGGCAGCGAT
GTGACGCTCAGCTCGCCAGCGCCAAGCAGCAGTGACGAGGAGAGGAGCGA
GGTTCTGGAGGAGACGGAGGAGGATCAAGAGCTCCAGCAGGAGCAGCAGC
AGATGCAGCTGGAGCTGGAGCAACAGAAGCTGGGAGTCGAGGCCGATGCC
ATGACACTCAGAGTCTGAAAGCTTTCTAGACCAT

BS10219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-RA 1152 CG8010-PA 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-RA 1633 CG8010-RA 179..1332 15..1168 5770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19267317..19268040 874..151 3620 100 Minus
X 23542271 X 19266957..19267254 1168..871 1490 100 Minus
X 23542271 X 19268505..19268598 150..57 470 100 Minus
X 23542271 X 19268676..19268718 57..15 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:55:09 has no hits.

BS10219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:29 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:52 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 157..1322 3..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:54 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 181..1331 17..1167 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:29 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 157..1322 3..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:46 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 181..1331 17..1167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:46 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
X 19266958..19267251 874..1167 100 <- Minus
X 19267318..19268040 151..873 100 <- Minus
X 19268505..19268598 57..150 100 <- Minus
X 19268677..19268716 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:54 Download gff for BS10219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19160991..19161284 874..1167 100 <- Minus
arm_X 19161351..19162073 151..873 100 <- Minus
arm_X 19162538..19162631 57..150 100 <- Minus
arm_X 19162710..19162749 17..56 100   Minus

BS10219.pep Sequence

Translation from 16 to 1167

> BS10219.pep
MDHHTYAKSGSKKWSAEEKRNLVVQRIAADELFSRYSPKHAEPWKKFKEM
AKIGDFSEIALRKQWFSMVQRYRIHKANTLGVPLNKQSIEELNKEWEFFG
LIHAYMNQKTADLHSYALKEPNVEQPNNNLAIASVYSCDEAQLSPLMLGV
LNDHNFGERSPPNGCDTDDMDESNTSPCHGNSGHSNNDELDRLLAEATAR
KDAAVGDGEDVCMLSNTNCHEMECGPVMIGGEVSLSNSRYNDFEEATVPT
ATAVKSEKPEKPIPKARKLLRKHHRKGLSEKEKYYRHRRRYEQRMEKRLM
GLCTVVGQLLKQFAPDMDVQPLLALGSDVTLSSPAPSSSDEERSEVLEET
EEDQELQQEQQQMQLELEQQKLGVEADAMTLRV*

BS10219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-PA 383 CG8010-PA 1..383 1..383 2009 100 Plus