Clone Sequence Records
BS10221.3prime Sequence
893 bp (824 high quality bases) assembled on 2006-04-19
> BS10221.3prime
ATGGTCTAGAAAGCTTTTATTCTTTTTGGGGTGGGCGTAGGTTCGAGTCT
TTCATACATGGTGTGACAAACATTTGCGGCAGTTCGTTTATCCACTTCGT
GAGCACGTATTTCGAACCGCTTATCACTGGACAAGCTGTGTGCAAAGTTT
TCGAATTTACAGCTCCTGAGTTGTGAAGATTGTACCAGAAAACCGCTGAT
CCCTTCTTGGGCATAACCGTAATATTAAGCATCGGGAAAACTGTGGCGCC
ACCCGAGTCAACTTCTCTCAGGTAGAACAAAACAGTAGCTATACGATCCC
CTTGCTTAAGCCTGGTCGTATTCGTATATTCATGAAAGTCATGGTGCAAT
ATGAAGTGCCCACCTAAGCCGTAATTAATCAGCGAAAATGGATCGCTCAT
CTCCATACTGAGTCCGGTCATATCGGTTACGCGCTCATTGAGTGTTTTAG
CATCTACTATATGTGAGTCCTTGGACGTTCTCACCTCAGACTTCAGACCA
GAAACAGACTCGGATAATCCAAAATCACTCGAGTTTAGCATCCCATCAAT
TTCGGTGTCGTAAATCACATCGTGAAAGACCACCATGTACGGATCTAAGC
CCAGCTCCTCCATTTTTAGAGGGGCAATCCGCGTGAAGGGAGTCGTGGAG
GTGTTGTAGCGACAGTGGAGTTTTTTACTTGGTTTTTGGACCACAGCAGT
GCAGTTTTGCGTAGTCGCCAACACACCCTCAAAGTGTATAACTTCATTAC
TGGCGACTATTCCCTCAGGCTTGTTCTCGAAATGTTGAAAGGCTTCAGTA
AGTTGCTTATTCTTCGCCAGGAGAAGTGCCCATGCCTTGTGCACTTGGTA
TTTTTCGATTATATTATCAAAACGAGTCAAAGAAAGGTTATAC
BS10221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18749-PB | 1476 | CG18749-RB | 600..1476 | 893..17 | 4385 | 100 | Minus |
CG15864-PA | 1179 | CG15864-RA | 825..1002 | 494..317 | 715 | 96 | Minus |
CG15864-PA | 1179 | CG15864-RA | 648..807 | 671..512 | 675 | 96.8 | Minus |
CG15864-PA | 1179 | CG15864-RA | 1007..1103 | 267..171 | 310 | 92.7 | Minus |
CG15864-PA | 1179 | CG15864-RA | 503..590 | 819..732 | 240 | 90.9 | Minus |
CG15864-PA | 1179 | CG15864-RA | 429..488 | 893..834 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33722-RE | 3544 | CG33722-RE | 2470..3346 | 893..17 | 4385 | 100 | Minus |
CG33722-RC | 3404 | CG33722-RC | 2470..3346 | 893..17 | 4385 | 100 | Minus |
CG18749-RC | 3544 | CG18749-RC | 2470..3346 | 893..17 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8246752..8247328 | 893..317 | 2885 | 100 | Minus |
3R | 32079331 | 3R | 8249221..8249794 | 893..317 | 2025 | 90.5 | Minus |
3R | 32079331 | 3R | 8247486..8247651 | 271..106 | 830 | 100 | Minus |
3R | 32079331 | 3R | 8249955..8250120 | 271..106 | 530 | 88 | Minus |
3R | 32079331 | 3R | 8247708..8247797 | 106..17 | 450 | 100 | Minus |
3R | 32079331 | 3R | 8250177..8250266 | 106..17 | 435 | 98.9 | Minus |
3R | 32079331 | 3R | 8247385..8247430 | 317..272 | 230 | 100 | Minus |
3R | 32079331 | 3R | 8249854..8249899 | 317..272 | 185 | 93.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:25 has no hits.
BS10221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:10 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-PB | 600..1476 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:45 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-PB | 600..1476 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:00 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RB | 2470..3350 | 12..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:10 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RC | 2470..3350 | 12..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:10 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8246752..8247328 | 317..893 | 100 | -> | Minus |
3R | 8247386..8247430 | 272..316 | 100 | -> | Minus |
3R | 8247486..8247651 | 106..271 | 100 | -> | Minus |
3R | 8247709..8247801 | 12..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:00 Download gff for
BS10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4073108..4073152 | 272..316 | 100 | -> | Minus |
arm_3R | 4072474..4073050 | 317..893 | 100 | -> | Minus |
arm_3R | 4073208..4073373 | 106..271 | 100 | -> | Minus |
arm_3R | 4073431..4073523 | 12..105 | 96 | | Minus |
BS10221.5prime Sequence
919 bp (818 high quality bases) assembled on 2006-04-19
> BS10221.5prime
GAAGTTATCAGTCGACATGTACATCTTAAAAAAATTAACGTTTATTGGCT
TTCTGAGTGCTTGTTTTATTAACTGCCAAGGATTTGTCAATTCGAACCCA
AAGAAATCTTATGCTGCCTCAACAATGGAACTGATGAAACTCCTAGAGGT
GGAGGATGAACTGGTAGACAATTTAAAGGGCTATGTGAAAACACTGAAAA
TGAAATTCAATTTAATGGAAAGATCCCTAATAGATATGAGTAGAGAGAAC
ATGGAAATGAAGAGTGATTATGAATCGTACTTGGGAAATCCGTTGAACAG
CTTTCGACTAATACATCGCCTACACACGAGTTGGAGAAAATGGTATCAAT
ATGCCATTAAGGTCGAGAATAATGCTTTAGGGCACATTGAAAATGCCCGA
CTGATGAGAAAGATGCTACCAACCTCGTCGGATTTGCAGCAGGCGTGTCG
CGGAATCCATGACTTGATGTACTTTTACGATTTGAAGCCAGAAGAACTGG
CAGCTGGTAACTTAGCAGGGTACTCGCAGCCAGGAACAGGACTGACAGCT
TACGATTGTTTAGCCCTTGGCGAGTTTGGCGTCCAAAATCAAAAGGATGA
TCTTGCCGAGGCTTGGTATAACCTTTCTTTGACTCGTTTTGATAATATAA
TCGAAAAATACCAAGTGCACAAGGCATGGGCACTTCTCCTGGCGAAGAAT
AAGCAACTTACTGAAGCCTTTCAACATTTCGAGAACAAGCCTGAGGGAAT
AGTCGCCAGTAATGAAGTTATACACTTTGAGGGTGTGTTGGCGACTACGC
AAAACTGCACTGCTGTGGTCCAAAACCAAGTAAAAAACTCCACTGTCGCT
ACAACACCTCCACGACTCCCTTCACGCGGATTGCCCCTCTAAAAATGGAG
GAGCTGGGCTTAGATCCGT
BS10221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18749-PB | 1476 | CG18749-RB | 1..809 | 17..825 | 4045 | 100 | Plus |
CG15864-PA | 1179 | CG15864-RA | 194..488 | 381..675 | 1125 | 95.2 | Plus |
CG15864-PA | 1179 | CG15864-RA | 33..194 | 103..264 | 785 | 99.3 | Plus |
CG18749-PB | 1476 | CG18749-RB | 807..904 | 822..919 | 490 | 100 | Plus |
CG15864-PA | 1179 | CG15864-RA | 648..730 | 837..919 | 340 | 96.3 | Plus |
CG15864-PA | 1179 | CG15864-RA | 503..590 | 690..777 | 240 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33722-RE | 3544 | CG33722-RE | 1871..2774 | 17..919 | 4495 | 99.9 | Plus |
CG33722-RC | 3404 | CG33722-RC | 1871..2774 | 17..919 | 4495 | 99.9 | Plus |
CG18749-RC | 3544 | CG18749-RC | 1871..2774 | 17..919 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8246670..8247056 | 534..919 | 1885 | 99.7 | Plus |
3R | 32079331 | 3R | 8249139..8249522 | 534..919 | 1175 | 88.1 | Plus |
3R | 32079331 | 3R | 8245980..8246185 | 17..222 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 8248445..8248654 | 13..222 | 975 | 97.6 | Plus |
3R | 32079331 | 3R | 8246240..8246401 | 220..381 | 810 | 100 | Plus |
3R | 32079331 | 3R | 8248709..8248870 | 220..381 | 795 | 99.4 | Plus |
3R | 32079331 | 3R | 8246452..8246608 | 378..534 | 785 | 100 | Plus |
3R | 32079331 | 3R | 8248921..8249077 | 378..534 | 770 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:58 has no hits.
BS10221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:11 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-PB | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:46 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-PB | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:18 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RB | 1865..2774 | 10..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:39 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RC | 1865..2774 | 10..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:39 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8246243..8246400 | 223..380 | 100 | -> | Plus |
3R | 8246455..8246608 | 381..534 | 100 | -> | Plus |
3R | 8246671..8247056 | 535..919 | 99 | | Plus |
3R | 8245974..8246185 | 10..222 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:18 Download gff for
BS10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4071696..4071907 | 10..222 | 99 | -> | Plus |
arm_3R | 4071965..4072122 | 223..380 | 100 | -> | Plus |
arm_3R | 4072177..4072330 | 381..534 | 100 | -> | Plus |
arm_3R | 4072393..4072778 | 535..919 | 99 | | Plus |
BS10221.complete Sequence
1508 bp (1508 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636603
> BS10221.complete
GAAGTTATCAGTCGACATGTACATCTTAAAAAAATTAACGTTTATTGGCT
TTCTGAGTGCTTGTTTTATTAACTGCCAAGGATTTGTCAATTCGAACCCA
AAGAAATCTTATGCTGCCTCAACAATGGAACTGATGAAACTCCTAGAGGT
GGAGGATGAACTGGTAGACAATTTAAAGGGCTATGTGAAAACACTGAAAA
TGAAATTCAATTTAATGGAAAGATCCCTAATAGATATGAGTAGAGAGAAC
ATGGAAATGAAGAGTGATTATGAATCGTACTTGGGAAATCCGTTGAACAG
CTTTCGACTAATACATCGCCTACACACGAGTTGGAGAAAATGGTATCAAT
ATGCCATTAAGGTCGAGAATAATGCTTTAGGGCACATTGAAAATGCCCGA
CTGATGAGAAAGATGCTACCAACCTCGTCGGATTTGCAGCAGGCGTGTCG
CGGAATCCATGACTTGATGTACTTTTACGATTTGAAGCCAGAAGAACTGG
CAGCTGGTAACTTAGCAGGGTACTCGCAGCCAGGAACAGGACTGACAGCT
TACGATTGTTTAGCCCTTGGCGAGTTTGGCGTCCAAAATCAAAAGGATGA
TCTTGCCGAGGCTTGGTATAACCTTTCTTTGACTCGTTTTGATAATATAA
TCGAAAAATACCAAGTGCACAAGGCATGGGCACTTCTCCTGGCGAAGAAT
AAGCAACTTACTGAAGCCTTTCAACATTTCGAGAACAAGCCTGAGGGAAT
AGTCGCCAGTAATGAAGTTATACACTTTGAGGGTGTGTTGGCGACTACGC
AAAACTGCACTGCTGTGGTCCAAAAACCAAGTAAAAAACTCCACTGTCGC
TACAACACCTCCACGACTCCCTTCACGCGGATTGCCCCTCTAAAAATGGA
GGAGCTGGGCTTAGATCCGTACATGGTGGTCTTTCACGATGTGATTTACG
ACACCGAAATTGATGGGATGCTAAACTCGAGTGATTTTGGATTATCCGAG
TCTGTTTCTGGTCTGAAGTCTGAGGTGAGAACGTCCAAGGACTCACATAT
AGTAGATGCTAAAACACTCAATGAGCGCGTAACCGATATGACCGGACTCA
GTATGGAGATGAGCGATCCATTTTCGCTGATTAATTACGGCTTAGGTGGG
CACTTCATATTGCACCATGACTTTCATGAATATACGAATACGACCAGGCT
TAAGCAAGGGGATCGTATAGCTACTGTTTTGTTCTACCTGAGAGAAGTTG
ACTCGGGTGGCGCCACAGTTTTCCCGATGCTTAATATTACGGTTATGCCC
AAGAAGGGATCAGCGGTTTTCTGGTACAATCTTCACAACTCAGGAGCTGT
AAATTCGAAAACTTTGCACACAGCTTGTCCAGTGATAAGCGGTTCGAAAT
ACGTGCTCACGAAGTGGATAAACGAACTGCCGCAAATGTTTGTCACACCA
TGTATGAAAGACTCGAACCTACGCCCACCCCAAAAAGAATAAAAGCTTTC
TAGACCAT
BS10221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18749-RC | 1476 | CG18749-PC | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG18749-RB | 1476 | CG18749-PB | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG15864-RB | 1473 | CG15864-PB | 1..1473 | 17..1492 | 5965 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33722-RE | 3544 | CG33722-RE | 1871..3346 | 17..1492 | 7380 | 100 | Plus |
CG33722-RC | 3404 | CG33722-RC | 1871..3346 | 17..1492 | 7380 | 100 | Plus |
CG18749-RC | 3544 | CG18749-RC | 1871..3346 | 17..1492 | 7380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8246670..8247328 | 534..1192 | 3295 | 100 | Plus |
3R | 32079331 | 3R | 8249139..8249794 | 534..1192 | 2330 | 90.6 | Plus |
3R | 32079331 | 3R | 8245980..8246185 | 17..222 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 8248445..8248654 | 13..222 | 975 | 97.6 | Plus |
3R | 32079331 | 3R | 8247486..8247651 | 1238..1403 | 830 | 100 | Plus |
3R | 32079331 | 3R | 8246240..8246401 | 220..381 | 810 | 100 | Plus |
3R | 32079331 | 3R | 8248709..8248870 | 220..381 | 795 | 99.4 | Plus |
3R | 32079331 | 3R | 8246452..8246608 | 378..534 | 785 | 100 | Plus |
3R | 32079331 | 3R | 8248921..8249077 | 378..534 | 770 | 99.4 | Plus |
3R | 32079331 | 3R | 8249955..8250120 | 1238..1403 | 530 | 88 | Plus |
3R | 32079331 | 3R | 8247708..8247797 | 1403..1492 | 450 | 100 | Plus |
3R | 32079331 | 3R | 8250177..8250266 | 1403..1492 | 435 | 98.9 | Plus |
3R | 32079331 | 3R | 8247385..8247430 | 1192..1237 | 230 | 100 | Plus |
3R | 32079331 | 3R | 8249854..8249899 | 1192..1237 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:36:31 has no hits.
BS10221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:30 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RB | 1..1476 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:00 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33722-RC | 1861..3346 | 10..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:55 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RB | 1871..3335 | 17..1481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:30 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33722-RC | 1861..3346 | 10..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:46 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18749-RC | 1871..3335 | 17..1481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:46 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8247486..8247651 | 1238..1403 | 100 | -> | Plus |
3R | 8247709..8247786 | 1404..1481 | 100 | | Plus |
3R | 8245980..8246185 | 17..222 | 100 | -> | Plus |
3R | 8246243..8246400 | 223..380 | 100 | -> | Plus |
3R | 8246455..8246608 | 381..534 | 100 | -> | Plus |
3R | 8246671..8247328 | 535..1192 | 100 | -> | Plus |
3R | 8247386..8247430 | 1193..1237 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:55 Download gff for
BS10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4071702..4071907 | 17..222 | 100 | -> | Plus |
arm_3R | 4071965..4072122 | 223..380 | 100 | -> | Plus |
arm_3R | 4072177..4072330 | 381..534 | 100 | -> | Plus |
arm_3R | 4072393..4073050 | 535..1192 | 100 | -> | Plus |
arm_3R | 4073108..4073152 | 1193..1237 | 100 | -> | Plus |
arm_3R | 4073208..4073373 | 1238..1403 | 100 | -> | Plus |
arm_3R | 4073431..4073508 | 1404..1481 | 100 | | Plus |
BS10221.pep Sequence
Translation from 16 to 1491
> BS10221.pep
MYILKKLTFIGFLSACFINCQGFVNSNPKKSYAASTMELMKLLEVEDELV
DNLKGYVKTLKMKFNLMERSLIDMSRENMEMKSDYESYLGNPLNSFRLIH
RLHTSWRKWYQYAIKVENNALGHIENARLMRKMLPTSSDLQQACRGIHDL
MYFYDLKPEELAAGNLAGYSQPGTGLTAYDCLALGEFGVQNQKDDLAEAW
YNLSLTRFDNIIEKYQVHKAWALLLAKNKQLTEAFQHFENKPEGIVASNE
VIHFEGVLATTQNCTAVVQKPSKKLHCRYNTSTTPFTRIAPLKMEELGLD
PYMVVFHDVIYDTEIDGMLNSSDFGLSESVSGLKSEVRTSKDSHIVDAKT
LNERVTDMTGLSMEMSDPFSLINYGLGGHFILHHDFHEYTNTTRLKQGDR
IATVLFYLREVDSGGATVFPMLNITVMPKKGSAVFWYNLHNSGAVNSKTL
HTACPVISGSKYVLTKWINELPQMFVTPCMKDSNLRPPQKE*
BS10221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18749-PC | 491 | CG18749-PC | 1..491 | 1..491 | 2585 | 100 | Plus |
CG18749-PB | 491 | CG18749-PB | 1..491 | 1..491 | 2585 | 100 | Plus |
CG15864-PB | 490 | CG15864-PB | 1..490 | 1..491 | 2342 | 90.2 | Plus |
PH4alphaPV-PA | 525 | CG31015-PA | 29..522 | 29..481 | 727 | 36.1 | Plus |
CG34345-PA | 504 | CG34345-PA | 37..504 | 32..481 | 677 | 34.4 | Plus |