Clone BS10222 Report

Search the DGRC for BS10222

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG9313-RA
Protein status:BS10222.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10222.3prime Sequence

941 bp (788 high quality bases) assembled on 2006-04-19

> BS10222.3prime
ATGGTCTAGAAAGCTTTTAACTTCGCACGGTTGTGGCTGCATCGGGCACC
GCAGTTGAACCTTCCGGAAGTTCCCGCACCAGGGAAAGCAGCTTCTCCAA
CTTGCCAATCTGGAGGGTGTTCTGGTCGAGATACAGCTGCTTCTTCGGCG
GCTTCACCATCATCCGGAGATTGGGCGATAGCTTCAGCGAAGTGGTGACG
CCCTTCTCATCGCCCACCACAATGAAGGCGAGCTTCTCGTTGAAGGATAA
CCTGGTGAGCTTGTTCTTTCGCTTGGGCACCACGGCCTGGATGCAGATGG
CCTTGTACTTATTCACATTTAGGTCGAAAACGTGGACCTTGCCCTCGGTG
GTCACCGCTGCGAAGACGGTGCTCGAGTAAGGTGCCCACTTGACATCGCC
AACGGCGGCACCAAGATCGAATATGAACAGCGGATCTGGACGCATATCCT
CCCACACCTTGACCATCCAGTCGGCGCCACAGGACACGAAGATGTTGCTG
TTGAAGCGATTGAAGTCAATGCGATAGACGGACATGTTGTGGGCATAGTA
GGTCATCAGGTATTTGGAGCTGAACGCCGTGCTGCACTTGTAGATGTAAC
CACACTCGGTGCCCACCAGAAATATCTTATTATCCACTGGATGGAACACC
ATGCAGGATCCTCCGCTCTTCAGCGTGACCTTTGTGCCATCTGGTCCGTC
AACCAGTCCGTTTTCGCGGTACAATGTGATGATGGTGGTTACCCACAGTT
TGTTCTGCATGAGAATCCAGTTGAAGACGCGCCCATCGGAGGACACCGAA
NAGAAGTTCACCTCGCCATCGGCCATGTCCAAACCCCACTTGATCTGCCA
CACGCACTCGCCGTGCTTGCAGTTGACTCCTCTGGACACATAGAGTGGTT
CCTTGCAGTCCTCGCGCAGATTGTAGACCGCCACATTGCCG

BS10222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-PA 2220 CG9313-RA 1296..2220 941..17 4606 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-RB 2652 CG9313-RB 1484..2409 941..16 4619 99.9 Minus
CG9313-RC 3069 CG9313-RC 1901..2826 941..16 4619 99.9 Minus
CG9313-RA 2649 CG9313-RA 1481..2406 941..16 4619 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20982805..20983543 941..203 3684 99.9 Minus
2R 25286936 2R 20983613..20983800 203..16 940 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:13:03 has no hits.

BS10222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:12 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-PA 1296..2220 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:48 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-PA 1296..2220 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:04 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 1481..2406 16..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:23 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 1481..2406 16..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:23 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20982805..20983542 204..941 99 -> Minus
2R 20983613..20983800 16..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:04 Download gff for BS10222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16870310..16871047 204..941 99 -> Minus
arm_2R 16871118..16871305 16..203 100   Minus

BS10222.5prime Sequence

833 bp (775 high quality bases) assembled on 2006-04-19

> BS10222.5prime
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCC

BS10222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-PA 2220 CG9313-RA 1..817 17..833 4085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-RC 3069 CG9313-RC 606..1422 17..833 4085 100 Plus
CG9313-RA 2649 CG9313-RA 186..1002 17..833 4085 100 Plus
CG9313-RB 2652 CG9313-RB 186..1005 17..833 4045 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20981311..20981741 65..495 2155 100 Plus
2R 25286936 2R 20981801..20982035 496..730 1175 100 Plus
2R 25286936 2R 20982096..20982199 730..833 520 100 Plus
2R 25286936 2R 20979506..20979553 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:40:20 has no hits.

BS10222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:13 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:50 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:52 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 179..1002 9..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:27 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 179..1002 9..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:27 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20982097..20982199 731..833 100   Plus
2R 20981313..20981741 67..495 100 -> Plus
2R 20981801..20982035 496..730 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:52 Download gff for BS10222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16868818..16869246 67..495 100 -> Plus
arm_2R 16869306..16869540 496..730 100 -> Plus
arm_2R 16869602..16869704 731..833 100   Plus

BS10222.complete Sequence

2252 bp assembled on 2007-11-30

GenBank Submission: FJ636604

> BS10222.complete
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCCAGAAGGACGGCACCAAG
AAGGAGGAGCGCAAGCGCGGCAAGAGGGAGAAGAAGTTCCGGGATAAGTC
GGCCATTGCCGAGCAGCTCAACAAGAAGTATCTCAAATGCTGGCAGATAC
TCGAGCGCATGATCAATCAGAATATCTACGATGACATCGCCCACGACTAT
CGCTACTGGGAGGATCCGGCTGATGAGTTTCGTGAGGGTGAGGGCAACCT
GCTGCCACTCTGGAAGTTTCAGTACGACAAGACCAAGAAGATGAACGTCA
CCGACATCCTGTTCAATCCGAGCTACTATGATCTCTTCGCCGTCTGTTTC
GGATCGCATGACTTCATGAAGCAGACCAATGAGGGTTACTTGTGTCTGTT
CACCGTTAAGAATCCCTCATTCCCGGACTATATAATTCAAACCGACTGTG
GTGTCATGTGCTGTGACATCCACCCAACGTATCCTTTCCTGGCCGTAATC
GGTCTCTATGACGGCAATGTGGCGGTCTACAATCTGCGCGAGGACTGCAA
GGAACCACTCTATGTGTCCAGAGGAGTCAACTGCAAGCACGGCGAGTGCG
TGTGGCAGATCAAGTGGGGTTTGGACATGGCCGATGGCGAGGTGAACTTC
TTTTCGGTGTCCTCCGATGGGCGCGTCTTCAACTGGATTCTCATGCAGAA
CAAACTGTGGGTAACCACCATCATCACATTGTACCGCGAAAACGGACTGG
TTGACGGACCAGATGGCACAAAGGTCACGCTGAAGAGCGGAGGATCCTGC
ATGGTGTTCCATCCAGTGGATAATAAGATATTTCTGGTGGGCACCGAGTG
TGGTTACATCTACAAGTGCAGCACGGCGTTCAGCTCCAAATACCTGATGA
CCTACTATGCCCACAACATGTCCGTCTATCGCATTGACTTCAATCGCTTC
AACAGCAACATCTTCGTGTCCTGTGGCGCCGACTGGATGGTCAAGGTGTG
GGAGGATATGCGTCCAGATCCGCTGTTCATATTCGATCTTGGTGCCGCCG
TTGGCGATGTCAAGTGGGCACCTTACTCGAGCACCGTCTTCGCAGCGGTG
ACCACCGAGGGCAAGGTCCACGTTTTCGACCTAAATGTGAATAAGTACAA
GGCCATCTGCATCCAGGCCGTGGTGCCCAAGCGAAAGAACAAGCTCACCA
GGTTATCCTTCAACGAGAAGCTCGCCTTCATTGTGGTGGGCGATGAGAAG
GGCGTCACCACTTCGCTGAAGCTATCGCCCAATCTCCGGATGATGGTGAA
GCCGCCGAAGAAGCAGCTGTATCTCGACCAGAACACCCTCCAGATTGGCA
AGTTGGAGAAGCTGCTTTCCCTGGTGCGGGAACTTCCGGAAGGTTCAACT
GCGGTGCCCGATGCAGCCACAACCGTGCGAAGTTAAAAGCTTTCTAGACC
AT

BS10222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-RC 2220 CG9313-PC 1..2220 17..2236 11100 100 Plus
CG9313-RA 2220 CG9313-PA 1..2220 17..2236 11100 100 Plus
CG9313-RB 2223 CG9313-PB 1..2223 17..2236 11035 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-RC 3069 CG9313-RC 606..2826 17..2237 11105 100 Plus
CG9313-RA 2649 CG9313-RA 186..2406 17..2237 11105 100 Plus
CG9313-RB 2652 CG9313-RB 186..2409 17..2237 11040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20982729..20983543 1236..2050 4075 100 Plus
2R 25286936 2R 20981311..20981741 65..495 2155 100 Plus
2R 25286936 2R 20982096..20982523 730..1157 2140 100 Plus
2R 25286936 2R 20981801..20982035 496..730 1175 100 Plus
2R 25286936 2R 20983613..20983800 2050..2237 940 100 Plus
2R 25286936 2R 20982586..20982663 1158..1235 390 100 Plus
2R 25286936 2R 20979506..20979553 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:44:25 has no hits.

BS10222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:21 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 1..2220 17..2236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:36 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 156..2383 9..2237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:40 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 186..2403 17..2234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:54 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 163..2380 17..2234 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:45 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
CG9313-RA 186..2403 17..2234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:45 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20979506..20979557 17..66 94 -> Plus
2R 20981313..20981741 67..495 100 -> Plus
2R 20981801..20982035 496..730 100 -> Plus
2R 20982097..20982523 731..1157 100 -> Plus
2R 20982586..20982663 1158..1235 100 -> Plus
2R 20982729..20983542 1236..2049 100 -> Plus
2R 20983613..20983797 2050..2234 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:40 Download gff for BS10222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16870091..16870168 1158..1235 100 -> Plus
arm_2R 16870234..16871047 1236..2049 100 -> Plus
arm_2R 16867011..16867062 17..66 94 -> Plus
arm_2R 16868818..16869246 67..495 100 -> Plus
arm_2R 16869306..16869540 496..730 100 -> Plus
arm_2R 16869602..16870028 731..1157 100 -> Plus
arm_2R 16871118..16871302 2050..2234 100   Plus

BS10222.pep Sequence

Translation from 16 to 2235

> BS10222.pep
MATKPGKGDGKQVKGKRTSKNKTDGPGGGGGDADDFDAWMKSRQLLKPDD
QLDLTEAELGEEITKVLTPTNTNIVRNLVVYSFKEGEFVPAPLPGNTVTL
IAFAGNSLHVDSDEGRRQIEESDEIGYPLPMPNYTVVEQRETDNVDGEEG
EGEEDDDGATAKDAAVEDEDVEEEDDEEAKGTEGDEGEGEGEGEGAAARQ
EDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNVDTQTIPPPRS
QFGANVLQWVIYDSYMENFAESQKDGTKKEERKRGKREKKFRDKSAIAEQ
LNKKYLKCWQILERMINQNIYDDIAHDYRYWEDPADEFREGEGNLLPLWK
FQYDKTKKMNVTDILFNPSYYDLFAVCFGSHDFMKQTNEGYLCLFTVKNP
SFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYDGNVAVYNLREDCKEPLYV
SRGVNCKHGECVWQIKWGLDMADGEVNFFSVSSDGRVFNWILMQNKLWVT
TIITLYRENGLVDGPDGTKVTLKSGGSCMVFHPVDNKIFLVGTECGYIYK
CSTAFSSKYLMTYYAHNMSVYRIDFNRFNSNIFVSCGADWMVKVWEDMRP
DPLFIFDLGAAVGDVKWAPYSSTVFAAVTTEGKVHVFDLNVNKYKAICIQ
AVVPKRKNKLTRLSFNEKLAFIVVGDEKGVTTSLKLSPNLRMMVKPPKKQ
LYLDQNTLQIGKLEKLLSLVRELPEGSTAVPDAATTVRS*

BS10222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9313-PC 739 CG9313-PC 1..739 1..739 3952 100 Plus
CG9313-PA 739 CG9313-PA 1..739 1..739 3952 100 Plus
CG9313-PB 740 CG9313-PB 1..740 1..739 3940 99.9 Plus
Dic61B-PB 684 CG7051-PB 294..632 355..681 310 28.7 Plus
Dic61B-PA 764 CG7051-PA 374..712 355..681 310 28.7 Plus