Clone Sequence Records
BS10222.3prime Sequence
941 bp (788 high quality bases) assembled on 2006-04-19
> BS10222.3prime
ATGGTCTAGAAAGCTTTTAACTTCGCACGGTTGTGGCTGCATCGGGCACC
GCAGTTGAACCTTCCGGAAGTTCCCGCACCAGGGAAAGCAGCTTCTCCAA
CTTGCCAATCTGGAGGGTGTTCTGGTCGAGATACAGCTGCTTCTTCGGCG
GCTTCACCATCATCCGGAGATTGGGCGATAGCTTCAGCGAAGTGGTGACG
CCCTTCTCATCGCCCACCACAATGAAGGCGAGCTTCTCGTTGAAGGATAA
CCTGGTGAGCTTGTTCTTTCGCTTGGGCACCACGGCCTGGATGCAGATGG
CCTTGTACTTATTCACATTTAGGTCGAAAACGTGGACCTTGCCCTCGGTG
GTCACCGCTGCGAAGACGGTGCTCGAGTAAGGTGCCCACTTGACATCGCC
AACGGCGGCACCAAGATCGAATATGAACAGCGGATCTGGACGCATATCCT
CCCACACCTTGACCATCCAGTCGGCGCCACAGGACACGAAGATGTTGCTG
TTGAAGCGATTGAAGTCAATGCGATAGACGGACATGTTGTGGGCATAGTA
GGTCATCAGGTATTTGGAGCTGAACGCCGTGCTGCACTTGTAGATGTAAC
CACACTCGGTGCCCACCAGAAATATCTTATTATCCACTGGATGGAACACC
ATGCAGGATCCTCCGCTCTTCAGCGTGACCTTTGTGCCATCTGGTCCGTC
AACCAGTCCGTTTTCGCGGTACAATGTGATGATGGTGGTTACCCACAGTT
TGTTCTGCATGAGAATCCAGTTGAAGACGCGCCCATCGGAGGACACCGAA
NAGAAGTTCACCTCGCCATCGGCCATGTCCAAACCCCACTTGATCTGCCA
CACGCACTCGCCGTGCTTGCAGTTGACTCCTCTGGACACATAGAGTGGTT
CCTTGCAGTCCTCGCGCAGATTGTAGACCGCCACATTGCCG
BS10222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-PA | 2220 | CG9313-RA | 1296..2220 | 941..17 | 4606 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-RB | 2652 | CG9313-RB | 1484..2409 | 941..16 | 4619 | 99.9 | Minus |
CG9313-RC | 3069 | CG9313-RC | 1901..2826 | 941..16 | 4619 | 99.9 | Minus |
CG9313-RA | 2649 | CG9313-RA | 1481..2406 | 941..16 | 4619 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20982805..20983543 | 941..203 | 3684 | 99.9 | Minus |
2R | 25286936 | 2R | 20983613..20983800 | 203..16 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:13:03 has no hits.
BS10222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:12 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-PA | 1296..2220 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:48 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-PA | 1296..2220 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:04 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 1481..2406 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:23 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 1481..2406 | 16..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:23 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20982805..20983542 | 204..941 | 99 | -> | Minus |
2R | 20983613..20983800 | 16..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:04 Download gff for
BS10222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16870310..16871047 | 204..941 | 99 | -> | Minus |
arm_2R | 16871118..16871305 | 16..203 | 100 | | Minus |
BS10222.5prime Sequence
833 bp (775 high quality bases) assembled on 2006-04-19
> BS10222.5prime
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCC
BS10222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-PA | 2220 | CG9313-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-RC | 3069 | CG9313-RC | 606..1422 | 17..833 | 4085 | 100 | Plus |
CG9313-RA | 2649 | CG9313-RA | 186..1002 | 17..833 | 4085 | 100 | Plus |
CG9313-RB | 2652 | CG9313-RB | 186..1005 | 17..833 | 4045 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20981311..20981741 | 65..495 | 2155 | 100 | Plus |
2R | 25286936 | 2R | 20981801..20982035 | 496..730 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 20982096..20982199 | 730..833 | 520 | 100 | Plus |
2R | 25286936 | 2R | 20979506..20979553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:40:20 has no hits.
BS10222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:13 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:50 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:52 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 179..1002 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:27 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 179..1002 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:27 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20982097..20982199 | 731..833 | 100 | | Plus |
2R | 20981313..20981741 | 67..495 | 100 | -> | Plus |
2R | 20981801..20982035 | 496..730 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:52 Download gff for
BS10222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16868818..16869246 | 67..495 | 100 | -> | Plus |
arm_2R | 16869306..16869540 | 496..730 | 100 | -> | Plus |
arm_2R | 16869602..16869704 | 731..833 | 100 | | Plus |
BS10222.complete Sequence
2252 bp assembled on 2007-11-30
GenBank Submission: FJ636604
> BS10222.complete
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCCAGAAGGACGGCACCAAG
AAGGAGGAGCGCAAGCGCGGCAAGAGGGAGAAGAAGTTCCGGGATAAGTC
GGCCATTGCCGAGCAGCTCAACAAGAAGTATCTCAAATGCTGGCAGATAC
TCGAGCGCATGATCAATCAGAATATCTACGATGACATCGCCCACGACTAT
CGCTACTGGGAGGATCCGGCTGATGAGTTTCGTGAGGGTGAGGGCAACCT
GCTGCCACTCTGGAAGTTTCAGTACGACAAGACCAAGAAGATGAACGTCA
CCGACATCCTGTTCAATCCGAGCTACTATGATCTCTTCGCCGTCTGTTTC
GGATCGCATGACTTCATGAAGCAGACCAATGAGGGTTACTTGTGTCTGTT
CACCGTTAAGAATCCCTCATTCCCGGACTATATAATTCAAACCGACTGTG
GTGTCATGTGCTGTGACATCCACCCAACGTATCCTTTCCTGGCCGTAATC
GGTCTCTATGACGGCAATGTGGCGGTCTACAATCTGCGCGAGGACTGCAA
GGAACCACTCTATGTGTCCAGAGGAGTCAACTGCAAGCACGGCGAGTGCG
TGTGGCAGATCAAGTGGGGTTTGGACATGGCCGATGGCGAGGTGAACTTC
TTTTCGGTGTCCTCCGATGGGCGCGTCTTCAACTGGATTCTCATGCAGAA
CAAACTGTGGGTAACCACCATCATCACATTGTACCGCGAAAACGGACTGG
TTGACGGACCAGATGGCACAAAGGTCACGCTGAAGAGCGGAGGATCCTGC
ATGGTGTTCCATCCAGTGGATAATAAGATATTTCTGGTGGGCACCGAGTG
TGGTTACATCTACAAGTGCAGCACGGCGTTCAGCTCCAAATACCTGATGA
CCTACTATGCCCACAACATGTCCGTCTATCGCATTGACTTCAATCGCTTC
AACAGCAACATCTTCGTGTCCTGTGGCGCCGACTGGATGGTCAAGGTGTG
GGAGGATATGCGTCCAGATCCGCTGTTCATATTCGATCTTGGTGCCGCCG
TTGGCGATGTCAAGTGGGCACCTTACTCGAGCACCGTCTTCGCAGCGGTG
ACCACCGAGGGCAAGGTCCACGTTTTCGACCTAAATGTGAATAAGTACAA
GGCCATCTGCATCCAGGCCGTGGTGCCCAAGCGAAAGAACAAGCTCACCA
GGTTATCCTTCAACGAGAAGCTCGCCTTCATTGTGGTGGGCGATGAGAAG
GGCGTCACCACTTCGCTGAAGCTATCGCCCAATCTCCGGATGATGGTGAA
GCCGCCGAAGAAGCAGCTGTATCTCGACCAGAACACCCTCCAGATTGGCA
AGTTGGAGAAGCTGCTTTCCCTGGTGCGGGAACTTCCGGAAGGTTCAACT
GCGGTGCCCGATGCAGCCACAACCGTGCGAAGTTAAAAGCTTTCTAGACC
AT
BS10222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-RC | 2220 | CG9313-PC | 1..2220 | 17..2236 | 11100 | 100 | Plus |
CG9313-RA | 2220 | CG9313-PA | 1..2220 | 17..2236 | 11100 | 100 | Plus |
CG9313-RB | 2223 | CG9313-PB | 1..2223 | 17..2236 | 11035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-RC | 3069 | CG9313-RC | 606..2826 | 17..2237 | 11105 | 100 | Plus |
CG9313-RA | 2649 | CG9313-RA | 186..2406 | 17..2237 | 11105 | 100 | Plus |
CG9313-RB | 2652 | CG9313-RB | 186..2409 | 17..2237 | 11040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20982729..20983543 | 1236..2050 | 4075 | 100 | Plus |
2R | 25286936 | 2R | 20981311..20981741 | 65..495 | 2155 | 100 | Plus |
2R | 25286936 | 2R | 20982096..20982523 | 730..1157 | 2140 | 100 | Plus |
2R | 25286936 | 2R | 20981801..20982035 | 496..730 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 20983613..20983800 | 2050..2237 | 940 | 100 | Plus |
2R | 25286936 | 2R | 20982586..20982663 | 1158..1235 | 390 | 100 | Plus |
2R | 25286936 | 2R | 20979506..20979553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:25 has no hits.
BS10222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:21 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 1..2220 | 17..2236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:36 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 156..2383 | 9..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:40 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 186..2403 | 17..2234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:54 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 163..2380 | 17..2234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:45 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9313-RA | 186..2403 | 17..2234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:45 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20979506..20979557 | 17..66 | 94 | -> | Plus |
2R | 20981313..20981741 | 67..495 | 100 | -> | Plus |
2R | 20981801..20982035 | 496..730 | 100 | -> | Plus |
2R | 20982097..20982523 | 731..1157 | 100 | -> | Plus |
2R | 20982586..20982663 | 1158..1235 | 100 | -> | Plus |
2R | 20982729..20983542 | 1236..2049 | 100 | -> | Plus |
2R | 20983613..20983797 | 2050..2234 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:40 Download gff for
BS10222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16870091..16870168 | 1158..1235 | 100 | -> | Plus |
arm_2R | 16870234..16871047 | 1236..2049 | 100 | -> | Plus |
arm_2R | 16867011..16867062 | 17..66 | 94 | -> | Plus |
arm_2R | 16868818..16869246 | 67..495 | 100 | -> | Plus |
arm_2R | 16869306..16869540 | 496..730 | 100 | -> | Plus |
arm_2R | 16869602..16870028 | 731..1157 | 100 | -> | Plus |
arm_2R | 16871118..16871302 | 2050..2234 | 100 | | Plus |
BS10222.pep Sequence
Translation from 16 to 2235
> BS10222.pep
MATKPGKGDGKQVKGKRTSKNKTDGPGGGGGDADDFDAWMKSRQLLKPDD
QLDLTEAELGEEITKVLTPTNTNIVRNLVVYSFKEGEFVPAPLPGNTVTL
IAFAGNSLHVDSDEGRRQIEESDEIGYPLPMPNYTVVEQRETDNVDGEEG
EGEEDDDGATAKDAAVEDEDVEEEDDEEAKGTEGDEGEGEGEGEGAAARQ
EDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNVDTQTIPPPRS
QFGANVLQWVIYDSYMENFAESQKDGTKKEERKRGKREKKFRDKSAIAEQ
LNKKYLKCWQILERMINQNIYDDIAHDYRYWEDPADEFREGEGNLLPLWK
FQYDKTKKMNVTDILFNPSYYDLFAVCFGSHDFMKQTNEGYLCLFTVKNP
SFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYDGNVAVYNLREDCKEPLYV
SRGVNCKHGECVWQIKWGLDMADGEVNFFSVSSDGRVFNWILMQNKLWVT
TIITLYRENGLVDGPDGTKVTLKSGGSCMVFHPVDNKIFLVGTECGYIYK
CSTAFSSKYLMTYYAHNMSVYRIDFNRFNSNIFVSCGADWMVKVWEDMRP
DPLFIFDLGAAVGDVKWAPYSSTVFAAVTTEGKVHVFDLNVNKYKAICIQ
AVVPKRKNKLTRLSFNEKLAFIVVGDEKGVTTSLKLSPNLRMMVKPPKKQ
LYLDQNTLQIGKLEKLLSLVRELPEGSTAVPDAATTVRS*
BS10222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9313-PC | 739 | CG9313-PC | 1..739 | 1..739 | 3952 | 100 | Plus |
CG9313-PA | 739 | CG9313-PA | 1..739 | 1..739 | 3952 | 100 | Plus |
CG9313-PB | 740 | CG9313-PB | 1..740 | 1..739 | 3940 | 99.9 | Plus |
Dic61B-PB | 684 | CG7051-PB | 294..632 | 355..681 | 310 | 28.7 | Plus |
Dic61B-PA | 764 | CG7051-PA | 374..712 | 355..681 | 310 | 28.7 | Plus |