Clone Sequence Records
BS10224.3prime Sequence
874 bp (820 high quality bases) assembled on 2006-04-19
> BS10224.3prime
ATGGTCTAGAAAGCTTTTACAACTTGGCGTTGACGTGAATGGCCAGCACT
CCATCGTCCTCGGAGCTGCCAATGTAGATGGAAGCCCGTCCGTCGGATCC
GACGGTGACGGTCTTGCCCGTGCAGGAGGAGCCGCTCTTGGAGCCGGAAA
TGACGTCGCAGTAGGTGCCGGCGGGCAGGCCCGTCTGCAGGGAGCTGTTC
AGGTCGTAGTTGTCGTTGTTGAAGGCCACGAAGCCGCGGCTGCCTCGGCT
GAAGGAGATCTGGTTGCTGCCGTTGTCCCACCAGTTCTGGATCTCGTCCA
AGCCCACGGTGTTTCGGAAGGCCACCATGTTGTAGATCTGGCGCCAGCGG
TGCTCACACACCCAGCCGCCGCTGCAGGAGTTGTCGCTATTGAAGATGGG
CGAGGCGATGTTGTGGCCGTCGGTGGTGGGCGGGCCCTGATCGGTGTCCG
TGAAGGAGAAGGAGGACATCACGCGGGGAGTGCCGAAGGGGTGCGCCAGC
ATGAAGGCGGAGGCCATCTTGTACTGCTTGGGCACCTTGTAGGTCAGAAC
GTCGGCGCCTCCTGCTCCATGTCCGCGCTGATTGTCGTGGTTGTCGACGA
ATACCAGGGAGCGGTCGGAGGCAGCGAAGCCCCAGGCGGTGCCCCAGTTG
GTCAGGTACTGCAGCTGGTCCTTGCCGCGGAAGACCTTGCCGATGGAGTC
GGAGTGGCGGAACTCGGTGATGGCGCCCAGTCCGGTGTACTCGGACTTGC
TGATGGCCTCGCCGCCCATGTCGATGACCTCCTGGACGATGTACGCCTTG
GATCCCGAGGCGAAGCCGTGGTCGGTGTTCAGGTTCTTGAGGCGGCCATA
GATGACGGCCAGGTCGGCGGGCCA
BS10224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18730-PA | 1485 | Amy-p-RA | 628..1485 | 874..17 | 4290 | 100 | Minus |
| CG17876-PA | 1485 | Amy-d-RA | 628..1485 | 874..17 | 3990 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1668 | CG18730-RB | 661..1519 | 874..16 | 4295 | 100 | Minus |
| Amy-p-RA | 1595 | CG18730-RA | 661..1519 | 874..16 | 4295 | 100 | Minus |
| Amy-d-RA | 1606 | CG17876-RA | 664..1522 | 874..16 | 4115 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17118785..17119643 | 16..874 | 4295 | 100 | Plus |
| 2R | 25286936 | 2R | 17125427..17126285 | 874..16 | 4115 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:39:32 has no hits.
BS10224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:18 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-PA | 629..1485 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:54 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18730-PA | 629..1485 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:23 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 662..1524 | 12..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:03 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 662..1524 | 12..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:03 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17118780..17119642 | 12..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:23 Download gff for
BS10224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13006285..13007147 | 12..873 | 99 | | Plus |
BS10224.5prime Sequence
957 bp (817 high quality bases) assembled on 2006-04-19
> BS10224.5prime
GAAGTTATCAGTCGACATGTTTCTGGCCAAGAGCATAGTGTGCCTCGCCC
TCCTGGCGGTGGCTAACGCCCAATTCGACACCAACTACGCCTCCGGTCGT
AGTGGAATGGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTGCCGA
GTGTGAGAACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTCTCCC
CTGTGAACGAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACGTTAC
CAACCCATCTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGCAGTT
CGCCAGCATGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTACGTGG
ACGTGGTCTTCAACCACATGGCCGCCGACGGAGGCACCTACGGCACTGGC
GGCAGCACCGCCAGCCCCAGCAGCAAGAGCTATCCCGGAGTGCCCTACTC
CTCGCTGGACTTCAACCCGACCTGCGCCATCAGCAACTACAACGACGCCA
ACGAGGTGCGCAACTGCGAGCTGGTCGGTCTGCGCGACCTTAACCAGGGC
AACTCCTACGTGCAGGACAAGGTGGTCGAGTTCCTGGACCATCTGATTGA
TCTCGGCGTGGCCGGATTCCGCGTGGACGCCGCCAAGCACATGTGGCCCG
CCGACCTGGCCGTCATCTATGGCCGCCTCAAGAACCTGAACACCGACCAC
GGCTTCGCCTCGGGATCCAAGGCGTACATCGTCCAGGAGGTCATCGACAT
GGGCGGCGAGGCCATCAGCAAGTCCGAGTACACCGGACTGGGCGCCATCA
CCGAGTTCCGCCACTCCGACTCCATCGGGCAGGTCTTCCGCGGCAAGGAC
CAGCTGCAGTACCTGACCAACTGGGGGACCGCCTGGGGCTTCGCTGCCTC
CGACCGCTCCCTGGTATTCGTCGACAACCACGACAATCAGCGCGGACATG
GAGCAGG
BS10224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18730-PA | 1485 | Amy-p-RA | 1..941 | 17..957 | 4630 | 99.6 | Plus |
| CG17876-PA | 1485 | Amy-d-RA | 1..941 | 17..957 | 4430 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1668 | CG18730-RB | 33..974 | 16..957 | 4665 | 99.7 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..974 | 16..957 | 4665 | 99.7 | Plus |
| Amy-d-RA | 1606 | CG17876-RA | 36..977 | 16..957 | 4545 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17119330..17120271 | 957..16 | 4665 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17124799..17125740 | 16..957 | 4545 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:31:40 has no hits.
BS10224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:19 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:55 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18730-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:17 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..974 | 16..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:38 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..974 | 16..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:38 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17119330..17120271 | 16..957 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:17 Download gff for
BS10224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13006835..13007776 | 16..957 | 99 | | Minus |
BS10224.complete Sequence
1517 bp (1517 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636605
> BS10224.complete
GAAGTTATCAGTCGACATGTTTCTGGCCAAGAGCATAGTGTGCCTCGCCC
TCCTGGCGGTGGCTAACGCCCAATTCGACACCAACTACGCCTCCGGTCGT
AGTGGAATGGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTGCCGA
GTGTGAGAACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTCTCCC
CTGTGAACGAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACGTTAC
CAACCCATCTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGCAGTT
CGCCAGCATGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTACGTGG
ACGTGGTCTTCAACCACATGGCCGCCGACGGAGGCACCTACGGCACTGGC
GGCAGCACCGCCAGCCCCAGCAGCAAGAGCTATCCCGGAGTGCCCTACTC
CTCGCTGGACTTCAACCCGACCTGCGCCATCAGCAACTACAACGACGCCA
ACGAGGTGCGCAACTGCGAGCTGGTCGGTCTGCGCGACCTTAACCAGGGC
AACTCCTACGTGCAGGACAAGGTGGTCGAGTTCCTGGACCATCTGATTGA
TCTCGGCGTGGCCGGATTCCGCGTGGACGCCGCCAAGCACATGTGGCCCG
CCGACCTGGCCGTCATCTATGGCCGCCTCAAGAACCTGAACACCGACCAC
GGCTTCGCCTCGGGATCCAAGGCGTACATCGTCCAGGAGGTCATCGACAT
GGGCGGCGAGGCCATCAGCAAGTCCGAGTACACCGGACTGGGCGCCATCA
CCGAGTTCCGCCACTCCGACTCCATCGGCAAGGTCTTCCGCGGCAAGGAC
CAGCTGCAGTACCTGACCAACTGGGGCACCGCCTGGGGCTTCGCTGCCTC
CGACCGCTCCCTGGTATTCGTCGACAACCACGACAATCAGCGCGGACATG
GAGCAGGAGGCGCCGACGTTCTGACCTACAAGGTGCCCAAGCAGTACAAG
ATGGCCTCCGCCTTCATGCTGGCGCACCCCTTCGGCACTCCCCGCGTGAT
GTCCTCCTTCTCCTTCACGGACACCGATCAGGGCCCGCCCACCACCGACG
GCCACAACATCGCCTCGCCCATCTTCAATAGCGACAACTCCTGCAGCGGC
GGCTGGGTGTGTGAGCACCGCTGGCGCCAGATCTACAACATGGTGGCCTT
CCGAAACACCGTGGGCTTGGACGAGATCCAGAACTGGTGGGACAACGGCA
GCAACCAGATCTCCTTCAGCCGAGGCAGCCGCGGCTTCGTGGCCTTCAAC
AACGACAACTACGACCTGAACAGCTCCCTGCAGACGGGCCTGCCCGCCGG
CACCTACTGCGACGTCATTTCCGGCTCCAAGAGCGGCTCCTCCTGCACGG
GCAAGACCGTCACCGTCGGATCCGACGGACGGGCTTCCATCTACATTGGC
AGCTCCGAGGACGATGGAGTGCTGGCCATTCACGTCAACGCCAAGTTGTA
AAAGCTTTCTAGACCAT
BS10224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1485 | CG18730-PB | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| Amy-p-RA | 1485 | CG18730-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| Amy-d-RA | 1485 | CG17876-PA | 1..1485 | 17..1501 | 7170 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1668 | CG18730-RB | 33..1519 | 16..1502 | 7435 | 100 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..1519 | 16..1502 | 7435 | 100 | Plus |
| Amy-d-RA | 1606 | CG17876-RA | 36..1522 | 16..1502 | 7180 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17118785..17120271 | 1502..16 | 7435 | 100 | Minus |
| 2R | 25286936 | 2R | 17124799..17126285 | 16..1502 | 7180 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:08:57 has no hits.
BS10224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:31 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 1..1485 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:02 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..1524 | 16..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:22 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 40..1516 | 23..1499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:31 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..1524 | 16..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:31 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 40..1516 | 23..1499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:31 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17118788..17120264 | 23..1499 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:22 Download gff for
BS10224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13006293..13007769 | 23..1499 | 100 | | Minus |
BS10224.pep Sequence
Translation from 16 to 1500
> BS10224.pep
MFLAKSIVCLALLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL
GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK
RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN
PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG
FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI
SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV
FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF
TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNTVG
LDEIQNWWDNGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV
ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*
BS10224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-PB | 494 | CG18730-PB | 1..494 | 1..494 | 2644 | 100 | Plus |
| Amy-p-PA | 494 | CG18730-PA | 1..494 | 1..494 | 2644 | 100 | Plus |
| Amy-d-PA | 494 | CG17876-PA | 1..494 | 1..494 | 2631 | 99.4 | Plus |
| Amyrel-PA | 493 | CG8221-PA | 10..493 | 8..494 | 1582 | 60.5 | Plus |
