Clone BS10225 Report

Search the DGRC for BS10225

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG10077-RA
Protein status:BS10225.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10225.3prime Sequence

854 bp (847 high quality bases) assembled on 2006-04-19

> BS10225.3prime
ATGGTCTAGAAAGCTTCTAGTTCTGCACAGGCAGCGGAGGCGGCGGATAG
GCAAAGATGTCGCCGCCGTTCGCCATCATATAGGGTGCCGCCTGCGTGGG
CACTGCGTACGGGGCGCGGTAAGAGCTGGCCACCGCTGCAGCTCCTCCGT
TGAGCGACACGGTTGCCATGCTGGAGGACATTGAAGAGTACTGGCCATAG
GCCTGTGGCTGTTGCATTTGCTGCTGCTGCTGTTGCTGCTGGGGAGTTTG
CAACTGTTGTTGCTGTTGCTGCTGGGCCGCCGCCGCCTGCTGCTGGTTCA
TCGCTGGTGGTGGCATGTTGGCAAAGTTCATGTTGTAGGGCGAGAAACGG
GAGCGCTTCTGATCAACTCCGTAGTTTGCAGCCGTCATCGCCGCCTGCAC
GGATGCATCAGGAAGTAGGTGTTGCTGCTGGGCAGCCTGAGCCTGTTGCT
GCTGCTGGTGCTGCGCCTGTGGCGGTCCAGATCCCGGACCATTCTGCGGC
TTGTTGGGCTCGAAGCAAGCAGCATTGGGATTGAAACGAGAGAAGGGCAC
TCCGCCGTTCTGCTGCTGCTGCTGCTGCTGTTGTCCCTGGTAGCCACCGC
CTCCCTGGCCACGGTAGCCGCCCTGTCCGCCCTGATTCGGCGGAGAAGTG
CGCGGCTTCTGATCGAAGCGTGGTGGTCCGCCAGCGCTGCCGCCGTTAAA
GGAGTTGCGATTCATGGTGGCGCCGGGACCATTGTTGTTGCGGTAGTTGT
TGCCGCCATTGTATCCACCGCCCATCTGGGGATTGCGGCCCTGATAGCCA
TTGCCGCCACGGTAGCCGCCACCCATGCCGCCACCGCGCTTGTTGTAGCC
ACCG

BS10225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-PA 2457 CG10077-RA 1620..2457 854..17 4190 100 Minus
CG18250-PA 2994 Dg-RA 857..894 241..204 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-RD 3420 CG10077-RD 1744..2582 854..16 4195 100 Minus
CG10077-RA 3543 CG10077-RA 1867..2705 854..16 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6950329..6951167 16..854 4195 100 Plus
Blast to na_te.dros performed 2015-02-06 17:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2659 472..204 175 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6956 469..220 158 58.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7078 475..133 148 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7057 472..203 148 55.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..7118 591..226 141 53.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2297..2563 493..208 139 57.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6827 476..415 139 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2550 476..248 136 55.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..7053 475..169 129 56.2 Minus
roo 9092 roo DM_ROO 9092bp 1039..1154 534..415 121 61.5 Minus
roo 9092 roo DM_ROO 9092bp 1073..1127 475..418 121 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6760 592..552 117 78.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2388 475..415 116 65.6 Minus

BS10225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:20 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-PA 1620..2457 17..854 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:57 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-PA 1620..2457 17..854 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:19 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 1867..2708 13..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:26:37 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 1867..2708 13..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:26:37 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6950326..6951167 13..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:19 Download gff for BS10225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6943426..6944267 13..854 99   Plus

BS10225.5prime Sequence

875 bp (836 high quality bases) assembled on 2006-04-19

> BS10225.5prime
GAAGTTATCAGTCGACATGAACATGTACAACGGACAGATGAACGCCTTCG
GAGGCGGTGGCGGCGGAGGAGCTGGTGGCCTAGCCGGCGGTATGGTGCCC
AATCGCATGGGCGGTGGTGCTCCCGGTGGCGGACCCGGCGGAGCGGGCAT
GTTCCAGCGCAATCGCTCGGCCCCATACCCAGGTTTCAATGGTCATGGAC
CCGCCAACGGTGGACAGCGACGCATGAACGGTGGTGGTCCTAGCATGGGA
CCCGGCGGACCACGCAACCAGGATGGATTCGGTGGTCAGAACGGGGGCCA
GCGCTCTTCCAATCATGGCGCTCACTTGCCCAAGATCGTTTGGTCTGAGG
TGAATCTTACGCCATTCCGCAAGAACTTTTACAAGCCGTGCGATTCGGTG
CTGGCCAGGACTGTCGGTGAAACAGAGACCTTCCTCACCAGCAATGAGAT
CACCATCAAGGGCGATCAGGTGCCCACACCCAGTATTGAATTCGAGGAGG
GCGGCTTTCCCGATTACGTGATGAACGAGATCCGTAAGCAGGGTTTCGCC
AAGCCAACGGCCATTCAAGCCCAGGGTTGGCCCATTGCTATGAGTGGACG
GGATCTGGTGGGCGTGGCCCAGACCGGATCGGGCAAGACCTTGGCGTATG
TTCTGCCGGCGGTGGTGCACATCAATAACCAGCCGCGCCTGGAGCGCGGT
GATGGACCCATCGCCCTGGTCCTGGCTCCCACTAGAGAGTTGGCCCAGCA
GATCCAGCAGGTAGCCATTGAGTTTGGCAGCAACACGCATGTGCGCAACA
CTTGCATCTTTGGTGGAGCGCCCAAGGGACAGCAGGCTAGGGATTTGGAG
CGCGGCGTGGAGATTGTAATTGCCC

BS10225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-PA 2457 CG10077-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-RD 3420 CG10077-RD 125..982 17..874 4290 100 Plus
CG10077-RC 3634 CG10077-RC 261..1118 17..874 4290 100 Plus
CG10077-RA 3543 CG10077-RA 248..1105 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6954320..6955169 874..25 4250 100 Minus
X 23542271 X 7929323..7929540 756..539 310 76.1 Minus
3R 32079331 3R 6004377..6004639 828..566 295 74.1 Minus
Blast to na_te.dros performed on 2015-02-12 19:09:27 has no hits.

BS10225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:21 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-PA 1..858 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:51:58 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-PA 1..858 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:01 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 243..1105 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:17 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 243..1105 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:17 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6954318..6955172 22..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:01 Download gff for BS10225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6947418..6948272 22..875 99   Minus

BS10225.complete Sequence

2489 bp assembled on 2007-11-30

GenBank Submission: FJ638830

> BS10225.complete
GAAGTTATCAGTCGACATGAACATGTACAACGGACAGATGAACGCCTTCG
GAGGCGGTGGCGGCGGAGGAGCTGGTGGCCTAGCCGGCGGTATGGTGCCC
AATCGCATGGGCGGTGGTGCTCCCGGTGGCGGACCCGGCGGAGCGGGCAT
GTTCCAGCGCAATCGCTCGGCCCCATACCCAGGTTTCAATGGTCATGGAC
CCGCCAACGGTGGACAGCGACGCATGAACGGTGGTGGTCCTAGCATGGGA
CCCGGCGGACCACGCAACCAGGATGGATTCGGTGGTCAGAACGGGGGCCA
GCGCTCTTCCAATCATGGCGCTCACTTGCCCAAGATCGTTTGGTCTGAGG
TGAATCTTACGCCATTCCGCAAGAACTTTTACAAGCCGTGCGATTCGGTG
CTGGCCAGGACTGTCGGTGAAACAGAGACCTTCCTCACCAGCAATGAGAT
CACCATCAAGGGCGATCAGGTGCCCACACCCAGTATTGAATTCGAGGAGG
GCGGCTTTCCCGATTACGTGATGAACGAGATCCGTAAGCAGGGTTTCGCC
AAGCCAACGGCCATTCAAGCCCAGGGTTGGCCCATTGCTATGAGTGGACG
GGATCTGGTGGGCGTGGCCCAGACCGGATCGGGCAAGACCTTGGCGTATG
TTCTGCCGGCGGTGGTGCACATCAATAACCAGCCGCGCCTGGAGCGCGGT
GATGGACCCATCGCCCTGGTCCTGGCTCCCACTAGAGAGTTGGCCCAGCA
GATCCAGCAGGTAGCCATTGAGTTTGGCAGCAACACGCATGTGCGCAACA
CTTGCATCTTTGGTGGAGCGCCCAAGGGACAGCAGGCTAGGGATTTGGAG
CGCGGCGTGGAGATTGTAATTGCCACACCAGGTCGCCTAATTGATTTCCT
CGAGCGCGGCACCACCTCGTTGAAGAGATGCACCTATCTGGTGCTTGACG
AGGCCGATCGTATGCTCGACATGGGCTTCGAGCCCCAGATCAGAAAGATC
ATGCAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCTACCTG
GCCCAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTACATAC
AGGTGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCCTCCAG
ATCGTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATCAAGCT
GCTAACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTTCGTGG
AAACCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCCAGGGC
TGGCGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGCGACTT
TGTGCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGCCACCG
ATGTGGCTGCCCGCGGACTCGACGTTGACGATGTCAAGTTTGTGATCAAC
TACGATTATCCTTCGAACTCGGAGGACTACGTTCATCGCATTGGACGCAC
CGGACGATCCAATAACACCGGCACCGCCTACACCCTGTTTACGCATTCCA
ACGCCAACAAGGCCAACGACTTGATCCAGGTGCTGCGCGAGGCCAACCAG
ACCATCAATCCCAAACTGATGAACATGGCCATGAACGGTGGCTACAACAA
GCGCGGTGGCGGCATGGGTGGCGGCTACCGTGGCGGCAATGGCTATCAGG
GCCGCAATCCCCAGATGGGCGGTGGATACAATGGCGGCAACAACTACCGC
AACAACAATGGTCCCGGCGCCACCATGAATCGCAACTCCTTTAACGGCGG
CAGCGCTGGCGGACCACCACGCTTCGATCAGAAGCCGCGCACTTCTCCGC
CGAATCAGGGCGGACAGGGCGGCTACCGTGGCCAGGGAGGCGGTGGCTAC
CAGGGACAACAGCAGCAGCAGCAGCAGCAGAACGGCGGAGTGCCCTTCTC
TCGTTTCAATCCCAATGCTGCTTGCTTCGAGCCCAACAAGCCGCAGAATG
GTCCGGGATCTGGACCGCCACAGGCGCAGCACCAGCAGCAGCAACAGGCT
CAGGCTGCCCAGCAGCAACACCTACTTCCTGATGCATCCGTGCAGGCGGC
GATGACGGCTGCAAACTACGGAGTTGATCAGAAGCGCTCCCGTTTCTCGC
CCTACAACATGAACTTTGCCAACATGCCACCACCAGCGATGAACCAGCAG
CAGGCGGCGGCGGCCCAGCAGCAACAGCAACAACAGTTGCAAACTCCCCA
GCAGCAACAGCAGCAGCAGCAAATGCAACAGCCACAGGCCTATGGCCAGT
ACTCTTCAATGTCCTCCAGCATGGCAACCGTGTCGCTCAACGGAGGAGCT
GCAGCGGTGGCCAGCTCTTACCGCGCCCCGTACGCAGTGCCCACGCAGGC
GGCACCCTATATGATGGCGAACGGCGGCGACATCTTTGCCTATCCGCCGC
CTCCGCTGCCTGTGCAGAACTAGAAGCTTTCTAGACCAT

BS10225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-RD 2457 CG10077-PD 1..2457 17..2473 12285 100 Plus
CG10077-RA 2457 CG10077-PA 1..2457 17..2473 12285 100 Plus
CG10077-RC 1419 CG10077-PC 1..1405 17..1421 7025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-RD 3420 CG10077-RD 125..2582 17..2474 12290 100 Plus
CG10077-RA 3543 CG10077-RA 248..2705 17..2474 12290 100 Plus
CG10077-RC 3634 CG10077-RC 261..1665 17..1421 7025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6953773..6955169 1421..25 6985 100 Minus
3L 28110227 3L 6950329..6951205 2474..1598 4385 100 Minus
3L 28110227 3L 6951267..6951446 1600..1421 900 100 Minus
X 23542271 X 7929009..7929540 1064..539 555 74.1 Minus
3R 32079331 3R 8124262..8124358 931..1027 245 83.5 Plus
Blast to na_te.dros performed 2014-11-27 14:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2659 2018..2286 175 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6956 2021..2270 158 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7057 2018..2287 148 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7078 2015..2357 148 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..7118 1899..2264 141 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2297..2563 1997..2282 139 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6827 2014..2075 139 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2550 2014..2242 136 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..7053 2015..2321 129 56.2 Plus
roo 9092 roo DM_ROO 9092bp 1039..1154 1956..2075 121 61.5 Plus
roo 9092 roo DM_ROO 9092bp 1073..1127 2015..2072 121 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6760 1898..1938 117 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2388 2015..2075 116 65.6 Plus

BS10225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:24 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 1..2457 17..2473 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:40 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 243..2708 9..2477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:27 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 248..2704 17..2473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:16 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 248..2704 17..2473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:14 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
CG10077-RA 248..2704 17..2473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:14 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6950330..6951202 1601..2473 100 <- Minus
3L 6951267..6951445 1422..1600 100 <- Minus
3L 6953773..6955172 22..1421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:27 Download gff for BS10225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6943430..6944302 1601..2473 100 <- Minus
arm_3L 6944367..6944545 1422..1600 100 <- Minus
arm_3L 6946873..6948272 22..1421 99   Minus

BS10225.pep Sequence

Translation from 16 to 2472

> BS10225.pep
MNMYNGQMNAFGGGGGGGAGGLAGGMVPNRMGGGAPGGGPGGAGMFQRNR
SAPYPGFNGHGPANGGQRRMNGGGPSMGPGGPRNQDGFGGQNGGQRSSNH
GAHLPKIVWSEVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGD
QVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGV
AQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVA
IEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTT
SLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVR
QLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDIS
AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSF
RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNN
TGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGM
GGGYRGGNGYQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGSAGGP
PRFDQKPRTSPPNQGGQGGYRGQGGGGYQGQQQQQQQQNGGVPFSRFNPN
AACFEPNKPQNGPGSGPPQAQHQQQQQAQAAQQQHLLPDASVQAAMTAAN
YGVDQKRSRFSPYNMNFANMPPPAMNQQQAAAAQQQQQQQLQTPQQQQQQ
QQMQQPQAYGQYSSMSSSMATVSLNGGAAAVASSYRAPYAVPTQAAPYMM
ANGGDIFAYPPPPLPVQN*

BS10225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-PD 818 CG10077-PD 1..818 1..818 4351 100 Plus
CG10077-PA 818 CG10077-PA 1..818 1..818 4351 100 Plus
CG10077-PC 472 CG10077-PC 1..468 1..468 2463 100 Plus
Rm62-PH 575 CG10279-PH 8..575 11..604 1694 59.2 Plus
Rm62-PD 575 CG10279-PD 8..575 11..604 1694 59.2 Plus