Clone Sequence Records
BS10226.3prime Sequence
888 bp (854 high quality bases) assembled on 2006-04-19
> BS10226.3prime
ATGGTCTAGAAAGCTTCTAATAGTTGCGCTTCATTTGACCGGTGGCAAAG
AGCACGTCGAGGATTTTCAGGAACTCCCGGTAGTTGAACTCCATGCACAT
GCCCTTCTTCACGCCGAAGCACTTGCAGATCGCTTGGAACTCGCGGCTGC
TCAGCATTACATGCATGTCGCGCACCGTGATGCCGCGCAGGAATTGATTC
TGCGTGATCGAGCCGCACTGTTCGCGATCGAAGTCCTTGAACAGCTGACT
CAGATTGGAGATCTCGTCCGGTTTGCGGGCCAACTTCATCAGGGCCTGCG
AGCAGATGGTTCGCTCGTCGAAGCTCAGGAAGCAGTCGACGCAGTCCAGA
TTGGGCAAATGGAGCAGTGGCACGGCGGTCACCACCTGGTCACCCATGTT
CGTGTCCAGTTGGATGAAGATCTCGTCGAGGGCCTTGCAGAAATCGCGAT
AGCGAATGCAGGACACGCGATTCGGTGAACGGAAGATGTTGCACAAGATG
TTAGCTTCCTCTTCCTTGATGATTACACTTGAGTTATCCAGGGCTCGCTT
GAAGTCCGATTCAAGGATCTCGCCCTCGCGATGGCGATCGTAGTCCTTCA
TGAACTCGATGACGGCCACGCTCTTGACCACAGCCTGTCGCTTGGCGTTC
GTAAGGATGCGCACGATCACCTCCTCGCTGACATCCTCGGGATCCAAATT
GTCTCTCGCAAACGGTGGACACTCCACCAGTTGCTGCTTGGTGACCAGCG
CTGGCATGGCATACTCCGCCGGATCGACGTCGTCCAAAAACTTGGTGTAG
CAAAAGCCCAGCTCGTTTCCATACCGACTCAGCACAGAGTCCTGCTCCGG
ATCGGACAGAAAGATGCCATTGGTGCGAAAAATCTGCT
BS10226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 2187 | CG10841-RA | 1316..2187 | 888..17 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RB | 2403 | CG10841-RB | 1433..2304 | 888..17 | 4345 | 99.9 | Minus |
CG10841-RA | 2406 | CG10841-RA | 1436..2307 | 888..17 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13634294..13634762 | 485..17 | 2345 | 100 | Minus |
3R | 32079331 | 3R | 13633830..13634232 | 888..486 | 2000 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:46:49 has no hits.
BS10226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:22 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1316..2187 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:00 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1316..2187 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:02 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1436..2311 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:06:08 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1436..2311 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:06:08 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13633830..13634232 | 486..888 | 99 | -> | Minus |
3R | 13634294..13634766 | 13..485 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:02 Download gff for
BS10226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9459552..9459954 | 486..888 | 99 | -> | Minus |
arm_3R | 9460016..9460488 | 13..485 | 99 | | Minus |
BS10226.5prime Sequence
954 bp (855 high quality bases) assembled on 2006-04-19
> BS10226.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCATTCAGAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTTCCT
AGAGTGCTATGACAGCCTAAACGTGGGCAGCATCACCAAGAATCAATTTG
AGCG
BS10226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 2187 | CG10841-RA | 1..938 | 17..954 | 4690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2406 | CG10841-RA | 121..1058 | 17..954 | 4690 | 100 | Plus |
CG10841-RB | 2403 | CG10841-RB | 121..1055 | 17..954 | 4635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13633079..13633329 | 704..954 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 13632811..13633018 | 497..704 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 13632578..13632750 | 324..496 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13632374..13632518 | 179..323 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13632175..13632301 | 53..179 | 635 | 100 | Plus |
3R | 32079331 | 3R | 13632062..13632098 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:59:44 has no hits.
BS10226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:23 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1..938 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:02 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1..938 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:40 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..1058 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:24 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..1058 | 17..954 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:24 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13632062..13632097 | 17..52 | 100 | -> | Plus |
3R | 13632175..13632301 | 53..179 | 100 | -> | Plus |
3R | 13632375..13632518 | 180..323 | 100 | -> | Plus |
3R | 13632578..13632750 | 324..496 | 100 | -> | Plus |
3R | 13632811..13633017 | 497..703 | 100 | -> | Plus |
3R | 13633079..13633329 | 704..954 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:40 Download gff for
BS10226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9457897..9458023 | 53..179 | 100 | -> | Plus |
arm_3R | 9458097..9458240 | 180..323 | 100 | -> | Plus |
arm_3R | 9457784..9457819 | 17..52 | 100 | -> | Plus |
arm_3R | 9458300..9458472 | 324..496 | 100 | -> | Plus |
arm_3R | 9458533..9458739 | 497..703 | 100 | -> | Plus |
arm_3R | 9458801..9459051 | 704..954 | 100 | | Plus |
BS10226.complete Sequence
2219 bp assembled on 2007-11-30
GenBank Submission: FJ636606
> BS10226.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCATTCAGAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTTCCT
AGAGTGCTATGACAGCCTAAACGTGGGCAGCATCACCAAGAATCAATTTG
AGCGCGGTCTATCGAACATGGGAGTGGGAAAATATCTGACCCAAAGGGAA
ATGTCCATTCTGCTGGAACGCTACACTGATCCCGTGGATATCAATCGAGT
GCGTTGGCGCAATTTCGCTGATGAGATCGATACAGTATTCACCATTAAGA
ACCTGGAGAAGATGCCACAGTGTGTCGTGGAATCGCCACTTCGTCACATC
CAGGAGTTGCCCAGACCCGGCGCCGTGCCCTGGGAGTCTGTGTCGGCTAA
TGTTCGTGATCTGTGTGAGGATGCCATGGCCAAGATTAAGATACGCATCC
GCAATCGTCGCCTCTATCTGCATCCATTCTTCCGAAGCTACGATAAACTC
AACAGTGGACATGTGCGTTGCAACATTACCAAGCAGATTTTTCGCACCAA
TGGCATCCTTCTGTCCGATCCGGAGCAGGACTCTGTGCTGAGTCGGTATG
GAAACGAGCTGGGCTTTTGCTACACCAAGTTTTTGGACGACGTCGATCCG
GCGGAGTATGCCATGCCAGCGCTGGTCACCAAGCAGCAACTGGTGGAGTG
TCCACCGTTTGCGAGAGACAATTTGGATCCCGAGGATGTCAGCGAGGAGG
TGATCGTGCGCATCCTTACGAACGCCAAGCGACAGGCTGTGGTCAAGAGC
GTGGCCGTCATCGAGTTCATGAAGGACTACGATCGCCATCGCGAGGGCGA
GATCCTTGAATCGGACTTCAAGCGAGCCCTGGATAACTCAAGTGTAATCA
TCAAGGAAGAGGAAGCTAACATCTTGTGCAACATCTTCCGTTCACCGAAT
CGCGTGTCCTGCATTCGCTATCGCGATTTCTGCAAGGCCCTCGACGAGAT
CTTCATCCAACTGGACACGAACATGGGTGACCAGGTGGTGACCGCCGTGC
CACTGCTCCATTTGCCCAATCTGGACTGCGTCGACTGCTTCCTGAGCTTC
GACGAGCGAACCATCTGCTCGCAGGCCCTGATGAAGTTGGCCCGCAAACC
GGACGAGATCTCCAATCTGAGTCAGCTGTTCAAGGACTTCGATCGCGAAC
AGTGCGGCTCGATCACGCAGAATCAATTCCTGCGCGGCATCACGGTGCGC
GACATGCATGTAATGCTGAGCAGCCGCGAGTTCCAAGCGATCTGCAAGTG
CTTCGGCGTGAAGAAGGGCATGTGCATGGAGTTCAACTACCGGGAGTTCC
TGAAAATCCTCGACGTGCTCTTTGCCACCGGTCAAATGAAGCGCAACTAT
TAGAAGCTTTCTAGACCAT
BS10226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2187 | CG10841-PA | 1..2187 | 17..2203 | 10935 | 100 | Plus |
CG10841-RB | 2184 | CG10841-PB | 1..2184 | 17..2203 | 10855 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2406 | CG10841-RA | 121..2307 | 17..2203 | 10935 | 100 | Plus |
CG10841-RB | 2403 | CG10841-RB | 121..2304 | 17..2203 | 10855 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13634294..13634762 | 1735..2203 | 2345 | 100 | Plus |
3R | 32079331 | 3R | 13633795..13634232 | 1297..1734 | 2190 | 100 | Plus |
3R | 32079331 | 3R | 13633079..13633460 | 704..1085 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 13633523..13633735 | 1084..1296 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 13632811..13633018 | 497..704 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 13632578..13632750 | 324..496 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13632374..13632518 | 179..323 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13632175..13632301 | 53..179 | 635 | 100 | Plus |
3R | 32079331 | 3R | 13632062..13632098 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:14 has no hits.
BS10226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:25 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1..2187 | 17..2203 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:42 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2311 | 17..2207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:32 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2307 | 17..2203 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:28 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2307 | 17..2203 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:55 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2307 | 17..2203 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:55 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13632175..13632301 | 53..179 | 100 | -> | Plus |
3R | 13632375..13632518 | 180..323 | 100 | -> | Plus |
3R | 13632578..13632750 | 324..496 | 100 | -> | Plus |
3R | 13632811..13633017 | 497..703 | 100 | -> | Plus |
3R | 13632062..13632097 | 17..52 | 100 | -> | Plus |
3R | 13633079..13633460 | 704..1085 | 100 | -> | Plus |
3R | 13633525..13633735 | 1086..1296 | 100 | -> | Plus |
3R | 13633795..13634232 | 1297..1734 | 100 | -> | Plus |
3R | 13634294..13634762 | 1735..2203 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:32 Download gff for
BS10226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9459247..9459457 | 1086..1296 | 100 | -> | Plus |
arm_3R | 9457784..9457819 | 17..52 | 100 | -> | Plus |
arm_3R | 9457897..9458023 | 53..179 | 100 | -> | Plus |
arm_3R | 9458097..9458240 | 180..323 | 100 | -> | Plus |
arm_3R | 9458300..9458472 | 324..496 | 100 | -> | Plus |
arm_3R | 9458533..9458739 | 497..703 | 100 | -> | Plus |
arm_3R | 9458801..9459182 | 704..1085 | 100 | -> | Plus |
arm_3R | 9459517..9459954 | 1297..1734 | 100 | -> | Plus |
arm_3R | 9460016..9460484 | 1735..2203 | 100 | | Plus |
BS10226.pep Sequence
Translation from 16 to 2202
> BS10226.pep
MHSTKIKEGDDREEMELNQIWRGCRKIQGAIFRYNFDICADLKQHDPCCS
GFVSEPIFTAVLGKYRKVAGLSESELRDVTDYFQIRDGRVAYRQFCKVVC
SETLHKTAKSDLATGLEWNDPWHVNVVPQPEDRRRLCLILLKIAQLCNIP
LMPYFQDYELIAQNVGVVTVAHFSRVLHFMKIPLSESDFLLLLRRYMKDG
YLVNYVAFLKHIDNIIAYLGEHHLLDNSHDIIKDFPGRLVDLELSQLPAI
DGCKAVHPIFPDACSTPKKNRNQCDILFCIQNYIYKNQVRTSEFLECYDS
LNVGSITKNQFERGLSNMGVGKYLTQREMSILLERYTDPVDINRVRWRNF
ADEIDTVFTIKNLEKMPQCVVESPLRHIQELPRPGAVPWESVSANVRDLC
EDAMAKIKIRIRNRRLYLHPFFRSYDKLNSGHVRCNITKQIFRTNGILLS
DPEQDSVLSRYGNELGFCYTKFLDDVDPAEYAMPALVTKQQLVECPPFAR
DNLDPEDVSEEVIVRILTNAKRQAVVKSVAVIEFMKDYDRHREGEILESD
FKRALDNSSVIIKEEEANILCNIFRSPNRVSCIRYRDFCKALDEIFIQLD
TNMGDQVVTAVPLLHLPNLDCVDCFLSFDERTICSQALMKLARKPDEISN
LSQLFKDFDREQCGSITQNQFLRGITVRDMHVMLSSREFQAICKCFGVKK
GMCMEFNYREFLKILDVLFATGQMKRNY*
BS10226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 728 | CG10841-PA | 1..728 | 1..728 | 3850 | 100 | Plus |
CG10841-PB | 727 | CG10841-PB | 1..727 | 1..728 | 3833 | 99.9 | Plus |