Clone BS10226 Report

Search the DGRC for BS10226

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG10841-RA
Protein status:BS10226.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10226.3prime Sequence

888 bp (854 high quality bases) assembled on 2006-04-19

> BS10226.3prime
ATGGTCTAGAAAGCTTCTAATAGTTGCGCTTCATTTGACCGGTGGCAAAG
AGCACGTCGAGGATTTTCAGGAACTCCCGGTAGTTGAACTCCATGCACAT
GCCCTTCTTCACGCCGAAGCACTTGCAGATCGCTTGGAACTCGCGGCTGC
TCAGCATTACATGCATGTCGCGCACCGTGATGCCGCGCAGGAATTGATTC
TGCGTGATCGAGCCGCACTGTTCGCGATCGAAGTCCTTGAACAGCTGACT
CAGATTGGAGATCTCGTCCGGTTTGCGGGCCAACTTCATCAGGGCCTGCG
AGCAGATGGTTCGCTCGTCGAAGCTCAGGAAGCAGTCGACGCAGTCCAGA
TTGGGCAAATGGAGCAGTGGCACGGCGGTCACCACCTGGTCACCCATGTT
CGTGTCCAGTTGGATGAAGATCTCGTCGAGGGCCTTGCAGAAATCGCGAT
AGCGAATGCAGGACACGCGATTCGGTGAACGGAAGATGTTGCACAAGATG
TTAGCTTCCTCTTCCTTGATGATTACACTTGAGTTATCCAGGGCTCGCTT
GAAGTCCGATTCAAGGATCTCGCCCTCGCGATGGCGATCGTAGTCCTTCA
TGAACTCGATGACGGCCACGCTCTTGACCACAGCCTGTCGCTTGGCGTTC
GTAAGGATGCGCACGATCACCTCCTCGCTGACATCCTCGGGATCCAAATT
GTCTCTCGCAAACGGTGGACACTCCACCAGTTGCTGCTTGGTGACCAGCG
CTGGCATGGCATACTCCGCCGGATCGACGTCGTCCAAAAACTTGGTGTAG
CAAAAGCCCAGCTCGTTTCCATACCGACTCAGCACAGAGTCCTGCTCCGG
ATCGGACAGAAAGATGCCATTGGTGCGAAAAATCTGCT

BS10226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-PA 2187 CG10841-RA 1316..2187 888..17 4335 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-RB 2403 CG10841-RB 1433..2304 888..17 4345 99.9 Minus
CG10841-RA 2406 CG10841-RA 1436..2307 888..17 4345 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13634294..13634762 485..17 2345 100 Minus
3R 32079331 3R 13633830..13634232 888..486 2000 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 13:46:49 has no hits.

BS10226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:22 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-PA 1316..2187 17..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:00 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-PA 1316..2187 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:02 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1436..2311 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:06:08 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1436..2311 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:06:08 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13633830..13634232 486..888 99 -> Minus
3R 13634294..13634766 13..485 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:02 Download gff for BS10226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9459552..9459954 486..888 99 -> Minus
arm_3R 9460016..9460488 13..485 99   Minus

BS10226.5prime Sequence

954 bp (855 high quality bases) assembled on 2006-04-19

> BS10226.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCATTCAGAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTTCCT
AGAGTGCTATGACAGCCTAAACGTGGGCAGCATCACCAAGAATCAATTTG
AGCG

BS10226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-PA 2187 CG10841-RA 1..938 17..954 4690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-RA 2406 CG10841-RA 121..1058 17..954 4690 100 Plus
CG10841-RB 2403 CG10841-RB 121..1055 17..954 4635 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13633079..13633329 704..954 1255 100 Plus
3R 32079331 3R 13632811..13633018 497..704 1040 100 Plus
3R 32079331 3R 13632578..13632750 324..496 865 100 Plus
3R 32079331 3R 13632374..13632518 179..323 725 100 Plus
3R 32079331 3R 13632175..13632301 53..179 635 100 Plus
3R 32079331 3R 13632062..13632098 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:59:44 has no hits.

BS10226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:23 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-PA 1..938 17..954 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:02 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-PA 1..938 17..954 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:40 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..1058 17..954 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:24 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..1058 17..954 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:24 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13632062..13632097 17..52 100 -> Plus
3R 13632175..13632301 53..179 100 -> Plus
3R 13632375..13632518 180..323 100 -> Plus
3R 13632578..13632750 324..496 100 -> Plus
3R 13632811..13633017 497..703 100 -> Plus
3R 13633079..13633329 704..954 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:40 Download gff for BS10226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9457897..9458023 53..179 100 -> Plus
arm_3R 9458097..9458240 180..323 100 -> Plus
arm_3R 9457784..9457819 17..52 100 -> Plus
arm_3R 9458300..9458472 324..496 100 -> Plus
arm_3R 9458533..9458739 497..703 100 -> Plus
arm_3R 9458801..9459051 704..954 100   Plus

BS10226.complete Sequence

2219 bp assembled on 2007-11-30

GenBank Submission: FJ636606

> BS10226.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCATTCAGAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTTCCT
AGAGTGCTATGACAGCCTAAACGTGGGCAGCATCACCAAGAATCAATTTG
AGCGCGGTCTATCGAACATGGGAGTGGGAAAATATCTGACCCAAAGGGAA
ATGTCCATTCTGCTGGAACGCTACACTGATCCCGTGGATATCAATCGAGT
GCGTTGGCGCAATTTCGCTGATGAGATCGATACAGTATTCACCATTAAGA
ACCTGGAGAAGATGCCACAGTGTGTCGTGGAATCGCCACTTCGTCACATC
CAGGAGTTGCCCAGACCCGGCGCCGTGCCCTGGGAGTCTGTGTCGGCTAA
TGTTCGTGATCTGTGTGAGGATGCCATGGCCAAGATTAAGATACGCATCC
GCAATCGTCGCCTCTATCTGCATCCATTCTTCCGAAGCTACGATAAACTC
AACAGTGGACATGTGCGTTGCAACATTACCAAGCAGATTTTTCGCACCAA
TGGCATCCTTCTGTCCGATCCGGAGCAGGACTCTGTGCTGAGTCGGTATG
GAAACGAGCTGGGCTTTTGCTACACCAAGTTTTTGGACGACGTCGATCCG
GCGGAGTATGCCATGCCAGCGCTGGTCACCAAGCAGCAACTGGTGGAGTG
TCCACCGTTTGCGAGAGACAATTTGGATCCCGAGGATGTCAGCGAGGAGG
TGATCGTGCGCATCCTTACGAACGCCAAGCGACAGGCTGTGGTCAAGAGC
GTGGCCGTCATCGAGTTCATGAAGGACTACGATCGCCATCGCGAGGGCGA
GATCCTTGAATCGGACTTCAAGCGAGCCCTGGATAACTCAAGTGTAATCA
TCAAGGAAGAGGAAGCTAACATCTTGTGCAACATCTTCCGTTCACCGAAT
CGCGTGTCCTGCATTCGCTATCGCGATTTCTGCAAGGCCCTCGACGAGAT
CTTCATCCAACTGGACACGAACATGGGTGACCAGGTGGTGACCGCCGTGC
CACTGCTCCATTTGCCCAATCTGGACTGCGTCGACTGCTTCCTGAGCTTC
GACGAGCGAACCATCTGCTCGCAGGCCCTGATGAAGTTGGCCCGCAAACC
GGACGAGATCTCCAATCTGAGTCAGCTGTTCAAGGACTTCGATCGCGAAC
AGTGCGGCTCGATCACGCAGAATCAATTCCTGCGCGGCATCACGGTGCGC
GACATGCATGTAATGCTGAGCAGCCGCGAGTTCCAAGCGATCTGCAAGTG
CTTCGGCGTGAAGAAGGGCATGTGCATGGAGTTCAACTACCGGGAGTTCC
TGAAAATCCTCGACGTGCTCTTTGCCACCGGTCAAATGAAGCGCAACTAT
TAGAAGCTTTCTAGACCAT

BS10226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-RA 2187 CG10841-PA 1..2187 17..2203 10935 100 Plus
CG10841-RB 2184 CG10841-PB 1..2184 17..2203 10855 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-RA 2406 CG10841-RA 121..2307 17..2203 10935 100 Plus
CG10841-RB 2403 CG10841-RB 121..2304 17..2203 10855 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13634294..13634762 1735..2203 2345 100 Plus
3R 32079331 3R 13633795..13634232 1297..1734 2190 100 Plus
3R 32079331 3R 13633079..13633460 704..1085 1910 100 Plus
3R 32079331 3R 13633523..13633735 1084..1296 1065 100 Plus
3R 32079331 3R 13632811..13633018 497..704 1040 100 Plus
3R 32079331 3R 13632578..13632750 324..496 865 100 Plus
3R 32079331 3R 13632374..13632518 179..323 725 100 Plus
3R 32079331 3R 13632175..13632301 53..179 635 100 Plus
3R 32079331 3R 13632062..13632098 17..53 185 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:27:14 has no hits.

BS10226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:25 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 17..2203 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:42 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..2311 17..2207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:32 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..2307 17..2203 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:28 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..2307 17..2203 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:55 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 121..2307 17..2203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:55 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13632175..13632301 53..179 100 -> Plus
3R 13632375..13632518 180..323 100 -> Plus
3R 13632578..13632750 324..496 100 -> Plus
3R 13632811..13633017 497..703 100 -> Plus
3R 13632062..13632097 17..52 100 -> Plus
3R 13633079..13633460 704..1085 100 -> Plus
3R 13633525..13633735 1086..1296 100 -> Plus
3R 13633795..13634232 1297..1734 100 -> Plus
3R 13634294..13634762 1735..2203 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:32 Download gff for BS10226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9459247..9459457 1086..1296 100 -> Plus
arm_3R 9457784..9457819 17..52 100 -> Plus
arm_3R 9457897..9458023 53..179 100 -> Plus
arm_3R 9458097..9458240 180..323 100 -> Plus
arm_3R 9458300..9458472 324..496 100 -> Plus
arm_3R 9458533..9458739 497..703 100 -> Plus
arm_3R 9458801..9459182 704..1085 100 -> Plus
arm_3R 9459517..9459954 1297..1734 100 -> Plus
arm_3R 9460016..9460484 1735..2203 100   Plus

BS10226.pep Sequence

Translation from 16 to 2202

> BS10226.pep
MHSTKIKEGDDREEMELNQIWRGCRKIQGAIFRYNFDICADLKQHDPCCS
GFVSEPIFTAVLGKYRKVAGLSESELRDVTDYFQIRDGRVAYRQFCKVVC
SETLHKTAKSDLATGLEWNDPWHVNVVPQPEDRRRLCLILLKIAQLCNIP
LMPYFQDYELIAQNVGVVTVAHFSRVLHFMKIPLSESDFLLLLRRYMKDG
YLVNYVAFLKHIDNIIAYLGEHHLLDNSHDIIKDFPGRLVDLELSQLPAI
DGCKAVHPIFPDACSTPKKNRNQCDILFCIQNYIYKNQVRTSEFLECYDS
LNVGSITKNQFERGLSNMGVGKYLTQREMSILLERYTDPVDINRVRWRNF
ADEIDTVFTIKNLEKMPQCVVESPLRHIQELPRPGAVPWESVSANVRDLC
EDAMAKIKIRIRNRRLYLHPFFRSYDKLNSGHVRCNITKQIFRTNGILLS
DPEQDSVLSRYGNELGFCYTKFLDDVDPAEYAMPALVTKQQLVECPPFAR
DNLDPEDVSEEVIVRILTNAKRQAVVKSVAVIEFMKDYDRHREGEILESD
FKRALDNSSVIIKEEEANILCNIFRSPNRVSCIRYRDFCKALDEIFIQLD
TNMGDQVVTAVPLLHLPNLDCVDCFLSFDERTICSQALMKLARKPDEISN
LSQLFKDFDREQCGSITQNQFLRGITVRDMHVMLSSREFQAICKCFGVKK
GMCMEFNYREFLKILDVLFATGQMKRNY*

BS10226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-PA 728 CG10841-PA 1..728 1..728 3850 100 Plus
CG10841-PB 727 CG10841-PB 1..727 1..728 3833 99.9 Plus