Clone Sequence Records
BS10227.3prime Sequence
970 bp (783 high quality bases) assembled on 2006-04-19
> BS10227.3prime
ATGGTCTAGAAAGCTTCTAGGTGCGAGTACCCTGTCTATATATGGCTATA
TATACAATGTATTTACATAACGTGTTGAGGGGTCTAAAGTTCGACTTCCC
CATCAATGGCAGTATCCGTGGCAGAGGCAATGGTCCGATCGACAAAGGGA
TTGAAGGCGGTATACTCCTTACAAGGTTCCGGGTGCGGGAGCGGCATTGA
TGGAGGATGTGTCCGGCCAGAGGAGCGGTGTGAATGGCACCACGGGTCTG
GGCAGTGTAGACGCCACTGTGAGCCACTGGGGCCACGACGACTGAGGGAG
CATGAGCAGCAACCACAGCGGGAGCAGGGGCAGCAAGCACGGCAGGAGCG
GCGGCGTGGATCGCTGCCGGAGGCCACGAAGCCACGTTCACGGCAGCAGG
CCAGTGGGCGGCGGGAACGGCCCAGGGAGAGGCCACCACAGCGGGTCCGG
AAACGGCGGTGTAGGACAGTCCATGTCCAGCCACCTGGGACAGCAGGGGG
ATCACAGACGACTGCACGCCCATGGCGAGGGCCAAGGTGAAGATAACGGC
GACGGCGAAATCGACGTCGTAGTTCTCGTGCAAGGAACACTCCTGGGTAT
TCCAACTATTGTTGCAACTCATCCAGGGTATCACTGGGTGTATTGAATTC
ACGGTATATATGAGGGGCACTACAGCTGCTATACTGTAATAGGTGAGCGT
TCCCAGATTGAGGAGCAGAATGGCGTAGCCAATGCCTTTAAATATTGGCG
CCACGCGAAATGCTGATATGGTTCCAGAACTTGAAAACTGTCCCAAAAAG
GCTTGGATCAAAAATATTGGCAGCGAGTAAAATAGCATTCCCATCAAGTA
GGCGATTATAAACAAAAGCCAACCGCCATGAAGTAATCCAAAGGTGGAGA
GCTCCGAAAAGATCAGCGAACTGAAGGCATGTGTGCAGCTGGCAAAGTAA
AAGTCCGCCAATTTGGCCAA
BS10227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-PD | 1212 | CG31904-RD | 261..1212 | 968..17 | 4685 | 99.6 | Minus |
CG31904-PB | 1212 | CG31904-RB | 261..1212 | 968..17 | 4685 | 99.6 | Minus |
CG13796-PB | 1686 | CG13796-RB | 261..669 | 968..560 | 1970 | 99.2 | Minus |
CG13796-PA | 1686 | CG13796-RA | 261..669 | 968..560 | 1970 | 99.2 | Minus |
CG13796-PC | 1686 | CG13796-RC | 261..669 | 968..560 | 1970 | 99.2 | Minus |
CG7216-PA | 408 | Acp1-RA | 7..361 | 559..205 | 1775 | 100 | Minus |
CG7216-PA | 408 | Acp1-RA | 371..408 | 206..169 | 190 | 100 | Minus |
CG7214-PA | 429 | CG7214-RA | 338..381 | 249..206 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2372..3323 | 968..17 | 4715 | 99.7 | Minus |
CG31904-RD | 1943 | CG31904-RD | 743..1694 | 968..17 | 4715 | 99.7 | Minus |
Acp1-RA | 858 | CG7216-RA | 63..616 | 559..17 | 2595 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7734664..7735206 | 17..559 | 2715 | 100 | Plus |
2L | 23513712 | 2L | 7740804..7741357 | 17..559 | 2570 | 98 | Plus |
2L | 23513712 | 2L | 7729180..7729357 | 560..737 | 890 | 100 | Plus |
2L | 23513712 | 2L | 7735320..7735497 | 560..737 | 890 | 100 | Plus |
2L | 23513712 | 2L | 7729418..7729550 | 735..867 | 650 | 99.2 | Plus |
2L | 23513712 | 2L | 7735558..7735690 | 735..867 | 650 | 99.2 | Plus |
2L | 23513712 | 2L | 7730198..7730298 | 868..968 | 475 | 98 | Plus |
2L | 23513712 | 2L | 7736338..7736438 | 868..968 | 475 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:27:03 has no hits.
BS10227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:24 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PD | 261..1212 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:03 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PD | 261..1212 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:42 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 743..1699 | 12..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:20 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 743..1699 | 12..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:20 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7736338..7736438 | 868..968 | 98 | | Plus |
2L | 7735320..7735495 | 560..735 | 100 | <- | Plus |
2L | 7735559..7735690 | 736..867 | 99 | <- | Plus |
2L | 7734659..7735206 | 12..559 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:42 Download gff for
BS10227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7734659..7735206 | 12..559 | 99 | <- | Plus |
arm_2L | 7735320..7735495 | 560..735 | 100 | <- | Plus |
arm_2L | 7735559..7735690 | 736..867 | 99 | <- | Plus |
arm_2L | 7736338..7736438 | 868..968 | 98 | | Plus |
BS10227.5prime Sequence
889 bp (795 high quality bases) assembled on 2006-04-19
> BS10227.5prime
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCAC
BS10227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-PD | 1212 | CG31904-RD | 1..873 | 17..889 | 4365 | 100 | Plus |
CG31904-PB | 1212 | CG31904-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG13796-PB | 1686 | CG13796-RB | 1..669 | 17..685 | 3345 | 100 | Plus |
CG13796-PA | 1686 | CG13796-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG13796-PC | 1686 | CG13796-RC | 1..669 | 17..685 | 3345 | 100 | Plus |
CG7216-PA | 408 | Acp1-RA | 7..210 | 686..889 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2110..2984 | 15..889 | 4375 | 100 | Plus |
CG31904-RD | 1943 | CG31904-RD | 481..1355 | 15..889 | 4375 | 100 | Plus |
CG13796-RD | 2711 | CG13796-RD | 444..1114 | 15..685 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7730198..7730560 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7736338..7736700 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7741154..7741357 | 889..686 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 7735003..7735206 | 889..686 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 7729180..7729357 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7735320..7735497 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7729418..7729550 | 510..378 | 665 | 100 | Minus |
2L | 23513712 | 2L | 7735558..7735690 | 510..378 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:12:26 has no hits.
BS10227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:25 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PD | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:04 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:27:21 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 473..1355 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:13 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 473..1355 | 7..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:13 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
2L | 7736338..7736708 | 7..377 | 98 | | Minus |
2L | 7735003..7735206 | 686..889 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:27:21 Download gff for
BS10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7735003..7735206 | 686..889 | 100 | <- | Minus |
arm_2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
arm_2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
arm_2L | 7736338..7736708 | 7..377 | 98 | | Minus |
BS10227.complete Sequence
1244 bp (1244 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636607
> BS10227.complete
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCC
TGCCGTGCTTGCTGCCCCTGCTCCCGCTGTGGTTGCTGCTCATGCTCCCT
CAGTCGTCGTGGCCCCAGTGGCTCACAGTGGCGTCTACACTGCCCAGACC
CGTGGTGCCATTCACACCGCTCCTCTGGCCGGACACATCCTCCATCAATG
CCGCTCCCGCACCCGGAACCTTGTAAGGAGTATACCGCCTTCAATCCCTT
TGTCGATCGGACCATTGCCTCTGCCACGGATACTGCCATTGATGGGGAAG
TCGAACTTTAGACCCCTCAACACGTTATGTAAATACATTGTATATATAGC
CATATATAGACAGGGTACTCGCACCTAGAAGCTTTCTAGACCAT
BS10227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 1212 | CG31904-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
CG31904-RD | 1212 | CG31904-PD | 1..1212 | 17..1228 | 6060 | 100 | Plus |
CG13796-RD | 1926 | CG13796-PD | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2110..3323 | 15..1228 | 6070 | 100 | Plus |
CG31904-RD | 1943 | CG31904-RD | 481..1694 | 15..1228 | 6070 | 100 | Plus |
CG13796-RD | 2711 | CG13796-RD | 444..1114 | 15..685 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7734664..7735206 | 1228..686 | 2715 | 100 | Minus |
2L | 23513712 | 2L | 7740804..7741357 | 1228..686 | 2570 | 98 | Minus |
2L | 23513712 | 2L | 7730198..7730560 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7736338..7736700 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7729180..7729357 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7735320..7735497 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7729418..7729550 | 510..378 | 665 | 100 | Minus |
2L | 23513712 | 2L | 7735558..7735690 | 510..378 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:40 has no hits.
BS10227.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:32 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 1..1212 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:04 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 2088..3314 | 7..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:19 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 483..1694 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:32 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 2088..3314 | 7..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:07 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 483..1694 | 17..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:07 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7734664..7735206 | 686..1228 | 100 | <- | Minus |
2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
2L | 7736338..7736698 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:19 Download gff for
BS10227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
arm_2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
arm_2L | 7734664..7735206 | 686..1228 | 100 | <- | Minus |
arm_2L | 7736338..7736698 | 17..377 | 100 | | Minus |
BS10227.pep Sequence
Translation from 16 to 1227
> BS10227.pep
MKGICGEQLNNCMLLGDCENSEHGTELPGDFIGEPVETESGGGMGGSLAL
AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTH
AFSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSS
SGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVI
PWMSCNNSWNTQECSLHENYDVDFAVAVIFTLALAMGVQSSVIPLLSQVA
GHGLSYTAVSGPAVVASPWAVPAAHWPAAVNVASWPPAAIHAAAPAVLAA
PAPAVVAAHAPSVVVAPVAHSGVYTAQTRGAIHTAPLAGHILHQCRSRTR
NLVRSIPPSIPLSIGPLPLPRILPLMGKSNFRPLNTLCKYIVYIAIYRQG
TRT*
BS10227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-PB | 403 | CG31904-PB | 1..403 | 1..403 | 2109 | 100 | Plus |
CG31904-PD | 403 | CG31904-PD | 1..403 | 1..403 | 2109 | 100 | Plus |
CG13796-PD | 641 | CG13796-PD | 1..223 | 1..223 | 1187 | 100 | Plus |
CG13796-PC | 641 | CG13796-PC | 1..223 | 1..223 | 1187 | 100 | Plus |
CG13796-PA | 641 | CG13796-PA | 1..223 | 1..223 | 1187 | 100 | Plus |