Clone BS10227 Report

Search the DGRC for BS10227

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG31904-RB
Protein status:BS10227.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10227.3prime Sequence

970 bp (783 high quality bases) assembled on 2006-04-19

> BS10227.3prime
ATGGTCTAGAAAGCTTCTAGGTGCGAGTACCCTGTCTATATATGGCTATA
TATACAATGTATTTACATAACGTGTTGAGGGGTCTAAAGTTCGACTTCCC
CATCAATGGCAGTATCCGTGGCAGAGGCAATGGTCCGATCGACAAAGGGA
TTGAAGGCGGTATACTCCTTACAAGGTTCCGGGTGCGGGAGCGGCATTGA
TGGAGGATGTGTCCGGCCAGAGGAGCGGTGTGAATGGCACCACGGGTCTG
GGCAGTGTAGACGCCACTGTGAGCCACTGGGGCCACGACGACTGAGGGAG
CATGAGCAGCAACCACAGCGGGAGCAGGGGCAGCAAGCACGGCAGGAGCG
GCGGCGTGGATCGCTGCCGGAGGCCACGAAGCCACGTTCACGGCAGCAGG
CCAGTGGGCGGCGGGAACGGCCCAGGGAGAGGCCACCACAGCGGGTCCGG
AAACGGCGGTGTAGGACAGTCCATGTCCAGCCACCTGGGACAGCAGGGGG
ATCACAGACGACTGCACGCCCATGGCGAGGGCCAAGGTGAAGATAACGGC
GACGGCGAAATCGACGTCGTAGTTCTCGTGCAAGGAACACTCCTGGGTAT
TCCAACTATTGTTGCAACTCATCCAGGGTATCACTGGGTGTATTGAATTC
ACGGTATATATGAGGGGCACTACAGCTGCTATACTGTAATAGGTGAGCGT
TCCCAGATTGAGGAGCAGAATGGCGTAGCCAATGCCTTTAAATATTGGCG
CCACGCGAAATGCTGATATGGTTCCAGAACTTGAAAACTGTCCCAAAAAG
GCTTGGATCAAAAATATTGGCAGCGAGTAAAATAGCATTCCCATCAAGTA
GGCGATTATAAACAAAAGCCAACCGCCATGAAGTAATCCAAAGGTGGAGA
GCTCCGAAAAGATCAGCGAACTGAAGGCATGTGTGCAGCTGGCAAAGTAA
AAGTCCGCCAATTTGGCCAA

BS10227.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-PD 1212 CG31904-RD 261..1212 968..17 4685 99.6 Minus
CG31904-PB 1212 CG31904-RB 261..1212 968..17 4685 99.6 Minus
CG13796-PB 1686 CG13796-RB 261..669 968..560 1970 99.2 Minus
CG13796-PA 1686 CG13796-RA 261..669 968..560 1970 99.2 Minus
CG13796-PC 1686 CG13796-RC 261..669 968..560 1970 99.2 Minus
CG7216-PA 408 Acp1-RA 7..361 559..205 1775 100 Minus
CG7216-PA 408 Acp1-RA 371..408 206..169 190 100 Minus
CG7214-PA 429 CG7214-RA 338..381 249..206 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2372..3323 968..17 4715 99.7 Minus
CG31904-RD 1943 CG31904-RD 743..1694 968..17 4715 99.7 Minus
Acp1-RA 858 CG7216-RA 63..616 559..17 2595 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7734664..7735206 17..559 2715 100 Plus
2L 23513712 2L 7740804..7741357 17..559 2570 98 Plus
2L 23513712 2L 7729180..7729357 560..737 890 100 Plus
2L 23513712 2L 7735320..7735497 560..737 890 100 Plus
2L 23513712 2L 7729418..7729550 735..867 650 99.2 Plus
2L 23513712 2L 7735558..7735690 735..867 650 99.2 Plus
2L 23513712 2L 7730198..7730298 868..968 475 98 Plus
2L 23513712 2L 7736338..7736438 868..968 475 98 Plus
Blast to na_te.dros performed on 2015-02-01 10:27:03 has no hits.

BS10227.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:24 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PD 261..1212 17..968 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:03 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PD 261..1212 17..968 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:42 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 743..1699 12..968 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:20 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 743..1699 12..968 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:20 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7736338..7736438 868..968 98   Plus
2L 7735320..7735495 560..735 100 <- Plus
2L 7735559..7735690 736..867 99 <- Plus
2L 7734659..7735206 12..559 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:42 Download gff for BS10227.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7734659..7735206 12..559 99 <- Plus
arm_2L 7735320..7735495 560..735 100 <- Plus
arm_2L 7735559..7735690 736..867 99 <- Plus
arm_2L 7736338..7736438 868..968 98   Plus

BS10227.5prime Sequence

889 bp (795 high quality bases) assembled on 2006-04-19

> BS10227.5prime
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCAC

BS10227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-PD 1212 CG31904-RD 1..873 17..889 4365 100 Plus
CG31904-PB 1212 CG31904-RB 1..873 17..889 4365 100 Plus
CG13796-PB 1686 CG13796-RB 1..669 17..685 3345 100 Plus
CG13796-PA 1686 CG13796-RA 1..669 17..685 3345 100 Plus
CG13796-PC 1686 CG13796-RC 1..669 17..685 3345 100 Plus
CG7216-PA 408 Acp1-RA 7..210 686..889 1020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2110..2984 15..889 4375 100 Plus
CG31904-RD 1943 CG31904-RD 481..1355 15..889 4375 100 Plus
CG13796-RD 2711 CG13796-RD 444..1114 15..685 3355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7730198..7730560 377..15 1815 100 Minus
2L 23513712 2L 7736338..7736700 377..15 1815 100 Minus
2L 23513712 2L 7741154..7741357 889..686 1020 100 Minus
2L 23513712 2L 7735003..7735206 889..686 1020 100 Minus
2L 23513712 2L 7729180..7729357 685..508 890 100 Minus
2L 23513712 2L 7735320..7735497 685..508 890 100 Minus
2L 23513712 2L 7729418..7729550 510..378 665 100 Minus
2L 23513712 2L 7735558..7735690 510..378 665 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:12:26 has no hits.

BS10227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:25 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PD 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:04 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:27:21 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 473..1355 7..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:13 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 473..1355 7..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:13 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7735320..7735495 510..685 100 <- Minus
2L 7735559..7735690 378..509 100 <- Minus
2L 7736338..7736708 7..377 98   Minus
2L 7735003..7735206 686..889 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:27:21 Download gff for BS10227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7735003..7735206 686..889 100 <- Minus
arm_2L 7735320..7735495 510..685 100 <- Minus
arm_2L 7735559..7735690 378..509 100 <- Minus
arm_2L 7736338..7736708 7..377 98   Minus

BS10227.complete Sequence

1244 bp (1244 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636607

> BS10227.complete
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCC
TGCCGTGCTTGCTGCCCCTGCTCCCGCTGTGGTTGCTGCTCATGCTCCCT
CAGTCGTCGTGGCCCCAGTGGCTCACAGTGGCGTCTACACTGCCCAGACC
CGTGGTGCCATTCACACCGCTCCTCTGGCCGGACACATCCTCCATCAATG
CCGCTCCCGCACCCGGAACCTTGTAAGGAGTATACCGCCTTCAATCCCTT
TGTCGATCGGACCATTGCCTCTGCCACGGATACTGCCATTGATGGGGAAG
TCGAACTTTAGACCCCTCAACACGTTATGTAAATACATTGTATATATAGC
CATATATAGACAGGGTACTCGCACCTAGAAGCTTTCTAGACCAT

BS10227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 1212 CG31904-PB 1..1212 17..1228 6060 100 Plus
CG31904-RD 1212 CG31904-PD 1..1212 17..1228 6060 100 Plus
CG13796-RD 1926 CG13796-PD 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2110..3323 15..1228 6070 100 Plus
CG31904-RD 1943 CG31904-RD 481..1694 15..1228 6070 100 Plus
CG13796-RD 2711 CG13796-RD 444..1114 15..685 3355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7734664..7735206 1228..686 2715 100 Minus
2L 23513712 2L 7740804..7741357 1228..686 2570 98 Minus
2L 23513712 2L 7730198..7730560 377..15 1815 100 Minus
2L 23513712 2L 7736338..7736700 377..15 1815 100 Minus
2L 23513712 2L 7729180..7729357 685..508 890 100 Minus
2L 23513712 2L 7735320..7735497 685..508 890 100 Minus
2L 23513712 2L 7729418..7729550 510..378 665 100 Minus
2L 23513712 2L 7735558..7735690 510..378 665 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:17:40 has no hits.

BS10227.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:32 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 1..1212 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:04 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 2088..3314 7..1233 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:19 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 483..1694 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:32 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 2088..3314 7..1233 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:07 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 483..1694 17..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:07 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7734664..7735206 686..1228 100 <- Minus
2L 7735320..7735495 510..685 100 <- Minus
2L 7735559..7735690 378..509 100 <- Minus
2L 7736338..7736698 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:19 Download gff for BS10227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7735320..7735495 510..685 100 <- Minus
arm_2L 7735559..7735690 378..509 100 <- Minus
arm_2L 7734664..7735206 686..1228 100 <- Minus
arm_2L 7736338..7736698 17..377 100   Minus

BS10227.pep Sequence

Translation from 16 to 1227

> BS10227.pep
MKGICGEQLNNCMLLGDCENSEHGTELPGDFIGEPVETESGGGMGGSLAL
AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTH
AFSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSS
SGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVI
PWMSCNNSWNTQECSLHENYDVDFAVAVIFTLALAMGVQSSVIPLLSQVA
GHGLSYTAVSGPAVVASPWAVPAAHWPAAVNVASWPPAAIHAAAPAVLAA
PAPAVVAAHAPSVVVAPVAHSGVYTAQTRGAIHTAPLAGHILHQCRSRTR
NLVRSIPPSIPLSIGPLPLPRILPLMGKSNFRPLNTLCKYIVYIAIYRQG
TRT*

BS10227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-PB 403 CG31904-PB 1..403 1..403 2109 100 Plus
CG31904-PD 403 CG31904-PD 1..403 1..403 2109 100 Plus
CG13796-PD 641 CG13796-PD 1..223 1..223 1187 100 Plus
CG13796-PC 641 CG13796-PC 1..223 1..223 1187 100 Plus
CG13796-PA 641 CG13796-PA 1..223 1..223 1187 100 Plus