Clone BS10229 Report

Search the DGRC for BS10229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG1486-RA
Protein status:BS10229.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10229.3prime Sequence

939 bp (877 high quality bases) assembled on 2006-04-19

> BS10229.3prime
ATGGTCTAGAAAGCTTTTAGTTATTGTTAATTGCACTGCTGGCGGCCACT
AACTCCGGAACGGTGGACGAGGCGGCACTGCTCTGACTGACGGTGCGGGC
ATGATCCACATGGTTTTGGGTCGGCGCCGCAGACGGAGCCGCTCCCGAGG
CTGCTGGCATCGATCCCGAAGCTTCTCCCGACTGCACTGGCGTGCCCTCG
CTCGCTCCGGATCCGTTTCCATTTCCGGGTACGGGCTCCACCGTGGGAAA
GACGGGCGGCAAGGCAGGCGCGACCACGGGCGTCTGCACCATGGGTGTGG
GAGGCGAACGATTCGCTGGCAACTGATGAGCAGTGGCTCCGGTCATCTGC
ATGTGGTACTTGTAAATGTTCTCGGTGCTTTCGACAACACCTTGGGTAAG
ATTGAGGCTCCGCCCCTTGATGCCCGACTCCTTGGCCGGTGGGGACCACC
AGTTGAAGACGCGTCCCACCACAGGCACGTGGCGCAGGATGCCCTCCTGC
CAGAGCTTCTCCTCCGATTCGCGCTGCAGATCAGCGGTAACCGCCTCAAT
GCCCTTTTTAACAATCTCCGACATGGTGTCCAATACCCGCGAGTTTTCCT
GGACGCTCTTGCCCACCGTGACCACCAAGTCTAACAACTCTTCGACCTCC
GTTTCATGGGTCACCATTCCGAATCGCACACAAATCAGACCATCGGTGCC
TTCGCCTAATGAAAAGGCATTGTCCGTGGATTTCAGGGCCTCCACCAGGT
CGATGTTCAGCTTGTTTAGCTCTGTTTTGGCCTGGTCCGTCAGCAGGGAC
TCCCAGCCCTCGGGCACGAAGCGAACACCGCCCATGCCCGCCCATTCGGG
CAGTGGAACGAGGCGCAGCACGTCGCTGCACTCCACCAGATGAATGAACC
GTGCCTTGTGCTTGATGGTCGCGCGCAGGATGTCCACAT

BS10229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-PA 2559 CG1486-RA 1637..2559 939..17 4615 100 Minus
CG1486-PB 2559 CG1486-RB 1637..2559 939..17 4615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-RB 3700 CG1486-RB 2031..2953 939..17 4615 100 Minus
CG1486-RA 3634 CG1486-RA 1965..2887 939..17 4615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21326358..21326744 939..553 1935 100 Minus
X 23542271 X 21327061..21327403 359..17 1715 100 Minus
X 23542271 X 21326801..21326998 555..358 990 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:26:52 has no hits.

BS10229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:27 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-PA 1637..2559 17..939 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:05 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-PB 1637..2559 17..939 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:08 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 1965..2887 17..939 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:55 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 1965..2887 17..939 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:55 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21326358..21326743 554..939 100 -> Minus
X 21326803..21326996 360..553 100 -> Minus
X 21327061..21327403 17..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:08 Download gff for BS10229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21197385..21197770 554..939 100 -> Minus
arm_X 21197830..21198023 360..553 100 -> Minus
arm_X 21198088..21198430 17..359 100   Minus

BS10229.5prime Sequence

883 bp (787 high quality bases) assembled on 2006-04-19

> BS10229.5prime
GAAGTTATCAGTCGACATGTCAGCGGCTGGTAGATCGGTGGACGATCCCG
GCCAGAGCCCACTCGTAGACCAAGAGCCGGATCCGGGCCAATCAACGCCA
GCGGTGGCCGAAATCGCCGCTTCCAGTATTCGATCGGGCCTGGCGGAGCT
GGAGCTGCGATCTTCGCAGGTGCTGCAGCGCTTAGAGAACGTTAAGGTGT
CGACCACGCCGGAGAGCCCAAATCCCGTCGAGAACGAGGAAGAGGCTGGG
GAGCGGGTGACCAGCGAGGACCTCCTGCCAGCGAAGCATCGCGTGCCCTC
CGACATTCTTAAGTCGCTGGAGCAATTGGTTTCTTACACGGACAGCGACG
ATGATCCGGAGTTCCCGCTGCCCGCCCTGGATGACGTCTCCCACTTGGCT
CTCATATCGCACAGCATTGTGGCCTATTTGTCGCATCTGGACCGTCAGCA
ACTGCTCCGGGTGACGAACAGCATTTCCGGGGACGCCACCCGCTGGTTGG
GCACGCTGTTTCACTTTGCCCACCCGGCGAGCAGCTTCCATGCGGACAAT
GCAGACGCGGTGCTGCGTACGGTGCGACTGGCCATCGTCGCCAGGTGTCC
GGGGTACTTGGAGGGTGGCATACCCGCCCTGGCGCAGCCTACGTTTTACA
TCTCGGAGAATACGACGCCGATGAGGCTGCACTACGCATGCCGCCAGTTG
GGCATACCGCTGGAGGCTATTAAGGTCATTCCGGAGCACAGTCAGTCCGG
GACAATGGATGTGACGCTGCTGCAAAAGCAAATTCAGCAGGATGTGGGCA
ATAACAGGACTCCGCTGCTGGTGGTCGCCGACATTGGAGCCTCGTTGTGT
GGCTATGTGGACAACCTGCTCCGGCTGAGGGAC

BS10229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-PA 2559 CG1486-RA 1..867 17..883 4335 100 Plus
CG1486-PB 2559 CG1486-RB 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-RB 3700 CG1486-RB 394..1261 16..883 4340 100 Plus
CG1486-RA 3634 CG1486-RA 328..1195 16..883 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21324710..21325465 128..883 3780 100 Plus
X 23542271 X 21324460..21324571 16..127 560 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:53:14 has no hits.

BS10229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:28 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:07 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-PB 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:04:04 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 328..1195 16..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:25 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 328..1195 16..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:25 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21324460..21324571 16..127 100 -> Plus
X 21324710..21325465 128..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:04:04 Download gff for BS10229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21195487..21195598 16..127 100 -> Plus
arm_X 21195737..21196492 128..883 100   Plus

BS10229.complete Sequence

2591 bp assembled on 2007-11-30

GenBank Submission: FJ636608

> BS10229.complete
GAAGTTATCAGTCGACATGTCAGCGGCTGGTAGATCGGTGGACGATCCCG
GCCAGAGCCCACTCGTAGACCAAGAGCCGGATCCGGGCCAATCAACGCCA
GCGGTGGCCGAAATCGCCGCTTCCAGTATTCGATCGGGCCTGGCGGAGCT
GGAGCTGCGATCTTCGCAGGTGCTGCAGCGCTTAGAGAACGTTAAGGTGT
CGACCACGCCGGAGAGCCCAAATCCCGTCGAGAACGAGGAAGAGGCTGGG
GAGCGGGTGACCAGCGAGGACCTCCTGCCAGCGAAGCATCGCGTGCCCTC
CGACATTCTTAAGTCGCTGGAGCAATTGGTTTCTTACACGGACAGCGACG
ATGATCCGGAGTTCCCGCTGCCCGCCCTGGATGACGTCTCCCACTTGGCT
CTCATATCGCACAGCATTGTGGCCTATTTGTCGCATCTGGACCGTCAGCA
ACTGCTCCGGGTGACGAACAGCATTTCCGGGGACGCCACCCGCTGGTTGG
GCACGCTGTTTCACTTTGCCCACCCGGCGAGCAGCTTCCATGCGGACAAT
GCAGACGCGGTGCTGCGTACGGTGCGACTGGCCATCGTCGCCAGGTGTCC
GGGGTACTTGGAGGGTGGCATACCCGCCCTGGCGCAGCCTACGTTTTACA
TCTCGGAGAATACGACGCCGATGAGGCTGCACTACGCATGCCGCCAGTTG
GGCATACCGCTGGAGGCTATTAAGGTCATTCCGGAGCACAGTCAGTCCGG
GACAATGGATGTGACGCTGCTGCAAAAGCAAATTCAGCAGGATGTGGGCA
ATAACAGGACTCCGCTGCTGGTGGTCGCCGACATTGGAGCCTCGTTGTGT
GGCTATGTGGACAACCTGCTCCGGCTGAGGGACGTATGCAAGGCGCACAA
CATGTGGCTGCACGCCAGTGGTCACGGACTGGCCGCCTTGGTGTGCGCCC
AAAATCAGGGCCATGTGGAGGAGGTACTCCACTCGATGGCCCTGAATTTG
GGCAGCTGGCTGGGTGTGCCCAGTCTGCCCATCGTCCTGCTGCACCGTCC
GCTGCAGAACAGCGCTCTGAGTGCCTTCGAATCCGATCCCATACTGTCGC
GTCGTCTTAATGCCCTGTCCTTGTGGACCAGTTTGCAGGCGCTGGGCCGG
AAGGCGATTGCGGAGCGTCTGCATGTGGCCTTCCAGACGTGCAGTATTCT
CTTCGAGATTGCCTCCAAGTGTGAGGGCATCCGGGTGTTGAGCCATACTC
CAGGAGCGCAGACCGGAGCCTCTTTGTCGGACGTCATTCAGAGCCCCTTT
GATGTGCAGGCGCTTTTTGATGCCGCCGCCCCCGTGGTCGCCTATCAGTT
CGACGGCAGCACCACCATTCCACTGGGCGGGAGTGGCTCTTCCGCCGCCG
CTGCCGCTGCTGAGCGGGAAACGGCCGAAGGCCTCAAGCCGCTAGAGAAG
ATTAACAATGCTTCCTACTTCGACCGGCTCAACTCCTGGCTGGGTCAAAT
CTTGCAACGCGACTGTCCCAATTTTGACTTTGAGGTAATTGAACACCCGA
CGCACGGCAGCTGCATTCGCTACTGTCCGCTGGAATTGGGGTTGGGTGAG
CAGCCGCCAAGCTCCGAGAACCTGGAGAGCTTCGCTCAGAGCTTAGAGGC
ACATGTGGACATCCTGCGCGCGACCATCAAGCACAAGGCACGGTTCATTC
ATCTGGTGGAGTGCAGCGACGTGCTGCGCCTCGTTCCACTGCCCGAATGG
GCGGGCATGGGCGGTGTTCGCTTCGTGCCCGAGGGCTGGGAGTCCCTGCT
GACGGACCAGGCCAAAACAGAGCTAAACAAGCTGAACATCGACCTGGTGG
AGGCCCTGAAATCCACGGACAATGCCTTTTCATTAGGCGAAGGCACCGAT
GGTCTGATTTGTGTGCGATTCGGAATGGTGACCCATGAAACGGAGGTCGA
AGAGTTGTTAGACTTGGTGGTCACGGTGGGCAAGAGCGTCCAGGAAAACT
CGCGGGTATTGGACACCATGTCGGAGATTGTTAAAAAGGGCATTGAGGCG
GTTACCGCTGATCTGCAGCGCGAATCGGAGGAGAAGCTCTGGCAGGAGGG
CATCCTGCGCCACGTGCCTGTGGTGGGACGCGTCTTCAACTGGTGGTCCC
CACCGGCCAAGGAGTCGGGCATCAAGGGGCGGAGCCTCAATCTTACCCAA
GGTGTTGTCGAAAGCACCGAGAACATTTACAAGTACCACATGCAGATGAC
CGGAGCCACTGCTCATCAGTTGCCAGCGAATCGTTCGCCTCCCACACCCA
TGGTGCAGACGCCCGTGGTCGCGCCTGCCTTGCCGCCCGTCTTTCCCACG
GTGGAGCCCGTACCCGGAAATGGAAACGGATCCGGAGCGAGCGAGGGCAC
GCCAGTGCAGTCGGGAGAAGCTTCGGGATCGATGCCAGCAGCCTCGGGAG
CGGCTCCGTCTGCGGCGCCGACCCAAAACCATGTGGATCATGCCCGCACC
GTCAGTCAGAGCAGTGCCGCCTCGTCCACCGTTCCGGAGTTAGTGGCCGC
CAGCAGTGCAATTAACAATAACTAAAAGCTTTCTAGACCAT

BS10229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-RB 2559 CG1486-PB 1..2559 17..2575 12780 100 Plus
CG1486-RA 2559 CG1486-PA 1..2559 17..2575 12780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-RB 3700 CG1486-RB 394..2953 16..2575 12785 100 Plus
CG1486-RA 3634 CG1486-RA 328..2887 16..2575 12785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21324710..21325822 128..1240 5550 99.9 Plus
X 23542271 X 21326228..21326744 1523..2039 2585 100 Plus
X 23542271 X 21327061..21327403 2233..2575 1715 100 Plus
X 23542271 X 21325888..21326170 1240..1522 1415 100 Plus
X 23542271 X 21326801..21326998 2037..2234 990 100 Plus
X 23542271 X 21324460..21324571 16..127 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:11:24 has no hits.

BS10229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:27 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 1..2559 17..2575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:44 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 392..2951 16..2575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:46 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 329..2885 17..2573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:26 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 393..2949 17..2573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:48 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 329..2885 17..2573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:48 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
X 21324461..21324571 17..127 100 -> Plus
X 21324710..21325822 128..1240 99 -> Plus
X 21325889..21326170 1241..1522 100 -> Plus
X 21326228..21326743 1523..2038 100 -> Plus
X 21326803..21326996 2039..2232 100 -> Plus
X 21327061..21327401 2233..2573 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:46 Download gff for BS10229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21195488..21195598 17..127 100 -> Plus
arm_X 21195737..21196849 128..1240 99 -> Plus
arm_X 21196916..21197197 1241..1522 100 -> Plus
arm_X 21197255..21197770 1523..2038 100 -> Plus
arm_X 21197830..21198023 2039..2232 100 -> Plus
arm_X 21198088..21198428 2233..2573 100   Plus

BS10229.pep Sequence

Translation from 16 to 2574

> BS10229.pep
MSAAGRSVDDPGQSPLVDQEPDPGQSTPAVAEIAASSIRSGLAELELRSS
QVLQRLENVKVSTTPESPNPVENEEEAGERVTSEDLLPAKHRVPSDILKS
LEQLVSYTDSDDDPEFPLPALDDVSHLALISHSIVAYLSHLDRQQLLRVT
NSISGDATRWLGTLFHFAHPASSFHADNADAVLRTVRLAIVARCPGYLEG
GIPALAQPTFYISENTTPMRLHYACRQLGIPLEAIKVIPEHSQSGTMDVT
LLQKQIQQDVGNNRTPLLVVADIGASLCGYVDNLLRLRDVCKAHNMWLHA
SGHGLAALVCAQNQGHVEEVLHSMALNLGSWLGVPSLPIVLLHRPLQNSA
LSAFESDPILSRRLNALSLWTSLQALGRKAIAERLHVAFQTCSILFEIAS
KCEGIRVLSHTPGAQTGASLSDVIQSPFDVQALFDAAAPVVAYQFDGSTT
IPLGGSGSSAAAAAAERETAEGLKPLEKINNASYFDRLNSWLGQILQRDC
PNFDFEVIEHPTHGSCIRYCPLELGLGEQPPSSENLESFAQSLEAHVDIL
RATIKHKARFIHLVECSDVLRLVPLPEWAGMGGVRFVPEGWESLLTDQAK
TELNKLNIDLVEALKSTDNAFSLGEGTDGLICVRFGMVTHETEVEELLDL
VVTVGKSVQENSRVLDTMSEIVKKGIEAVTADLQRESEEKLWQEGILRHV
PVVGRVFNWWSPPAKESGIKGRSLNLTQGVVESTENIYKYHMQMTGATAH
QLPANRSPPTPMVQTPVVAPALPPVFPTVEPVPGNGNGSGASEGTPVQSG
EASGSMPAASGAAPSAAPTQNHVDHARTVSQSSAASSTVPELVAASSAIN
NN*

BS10229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-PB 852 CG1486-PB 1..852 1..852 4370 100 Plus
CG1486-PA 852 CG1486-PA 1..852 1..852 4370 100 Plus