Clone BS10231 Report

Search the DGRC for BS10231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10231.pep:
Sequenced Size:16

Clone Sequence Records

BS10231.3prime Sequence

873 bp (850 high quality bases) assembled on 2006-04-19

> BS10231.3prime
ATGGTCTAGAAAGCTTTTAGGCACCCATCATTAGCTGCTCGAAGGCATCC
TCCACATTGCTCTCGTCCAGCAGATTGAGATTCGCGATGTGCGGCATGGT
GGCACTGCGACTGAGTGCAGCACCACCACCAATGCCACCAACACCACCAC
CACGCACCACCATGCCCAAACCGGCGGTGGAAACGTTACCATTCGATGTG
GTGGTCAACGAACTCAATGATTTTCGAGCTGCCGCCGAAAGTTTTTCACT
CGTTTTCGTGCGATTAATGGCCGATTTTCGACTTGAGGTCGTTGTCGTCA
TCGATGTTCGTAACTCCTCCACTTGGCCGCCAGTTGGTGACTTCTGGCCG
GAGAAGTAGGCAGCCACCGTACGCTGTTTCTCGCTGACCTGGGCCTTATC
AATGCCCGCTTCGTAGAGTTTGGGCACGGCGAGTGAGTGTCCCGATTTGG
TGCGTCTCAGTTCGCCTGGAGAACCGGGCTGGTTGTATTTGGCCGGACTT
GGACCCGCAGTCTGTTGCAGCTGGCAAATTTGGTTCCACGAATCGCACTT
GCTCAATCGATTCACCCTGGAACCCGATTGCGTACCCTGGTGAGAATCCT
CCTCGTGATTTCGCCTGCTCATCGATGTAAAGGCGCTCACATTGTTGAAC
ACTATGTTGTGGGGTATCTCGTCTTCGGGCGGAACTTGTGGCTGTGGTGT
CGCCGGGGTTTCCACAATACTTGGCTTGATTTGCTGATGTTGTTGCTGGT
GATGTTGCTGTTGCACCACTGTGGTGCTCCTTACTGAGGTACTGCTGGTG
GTGGTGCTATTGCTATTGCCCTGCTTGTTCAGCTGCGGACTCTGGTACGA
ATTGGGCATGTCGACTGATAACT

BS10231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:44:37 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-RU 17577 CG34417-RU 14664..15510 861..15 4235 100 Minus
CG34417-RX 17271 CG34417-RX 14393..15239 861..15 4235 100 Minus
CG34417-RW 17173 CG34417-RW 14042..14888 861..15 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6582507..6583353 861..15 4235 100 Minus
Blast to na_te.dros performed 2015-02-01 10:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6897 828..655 212 62.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6895 846..686 202 64.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2416 838..732 201 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6970 838..665 185 63.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2429 867..731 181 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6916 848..731 175 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2410 843..732 174 64.3 Minus
roo 9092 roo DM_ROO 9092bp 1036..1183 859..714 168 64.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6844 810..686 161 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2478 838..733 158 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2884..2981 829..731 141 64.4 Minus
roo 9092 roo DM_ROO 9092bp 1030..1135 828..731 140 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2699..2827 873..732 139 62.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6808 763..686 137 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1059..1137 762..687 135 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2408 781..686 133 65 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6775 781..731 133 77.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2663 763..726 119 83.3 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 980..1022 764..722 116 74.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1558 763..732 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1593 764..718 115 77.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2350 763..732 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2637 764..724 115 75.6 Minus
TART-C 11124 TART-C TARTC 11124bp 9175..9216 773..732 111 73.8 Minus

BS10231.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:28:15 Download gff for BS10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34417-RL 14303..15159 15..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:43 Download gff for BS10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34417-RW 14032..14888 15..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:43 Download gff for BS10231.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6582497..6583353 15..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:28:15 Download gff for BS10231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6476530..6477386 15..873 99   Minus

BS10231.5prime Sequence

873 bp (872 high quality bases) assembled on 2006-04-19

> BS10231.5prime
GAAGTTATCAGTCGACATGCCCAATTCGTACCAGAGTCCGCAGCTGAACA
AGCAGGGCAATAGCAATAGCACCACCACCAGCAGTACCTCAGTAAGGAGC
ACCACAGTGGTGCAACAGCAACATCACCAGCAACAACATCAGCAAATCAA
GCCAAGTATTGTGGAAACCCCGGCGACACCACAGCCACAAGTTCCGCCCG
AAGACGAGATACCCCACAACATAGTGTTCAACAATGTGAGCGCCTTTACA
TCGATGAGCAGGCGAAATCACGAGGAGGATTCTCACCAGGGTACGCAATC
GGGTTCCAGGGTGAATCGATTGAGCAAGTGCGATTCGTGGAACCAAATTT
GCCAGCTGCAACAGACTGCGGGTCCAAGTCCGGCCAAATACAACCAGCCC
GGTTCTCCAGGCGAACTGAGACGCACCAAATCGGGACACTCACTCGCCGT
GCCCAAACTCTACGAAGCGGGCATTGATAAGGCCCAGGTCAGCGAGAAAC
AGCGTACGGTGGCTGCCTACTTCTCCGGCCAGAAGTCACCAACTGGCGGC
CAAGTGGAGGAGTTACGAACATCGATGACGACAACGACCTCAAGTCGAAA
ATCGGCCATTAATCGCACGAAAACGAGTGAAAAACTTTCGGCGGCAGCTC
GAAAATCATTGAGTTCGTTGACCACCACATCGAATGGTAACGTTTCCACC
GCCGGTTTGGGCATGGTGGTGCGTGGTGGTGGTGTTGGTGGCATTGGTGG
TGGTGCTGCACTCAGTCGCAGTGCCACCATGCCGCACATCGCGAATCTCA
ATCTGCTGGACGAGAGCAATGTGGAGGATGCCTTCGAGCAGCTAATGATG
GGTGCCTAAAAGCTTTCTAGACC

BS10231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:44:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-RU 17577 CG34417-RU 14664..15510 15..861 4235 100 Plus
CG34417-RX 17271 CG34417-RX 14393..15239 15..861 4235 100 Plus
CG34417-RW 17173 CG34417-RW 14042..14888 15..861 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6582507..6583353 15..861 4235 100 Plus
Blast to na_te.dros performed 2015-02-11 18:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6897 48..221 212 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6895 30..190 202 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2416 38..144 201 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6970 38..211 185 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2429 9..145 181 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6916 28..145 175 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2410 33..144 174 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1036..1183 17..162 168 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6844 66..190 161 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2478 38..143 158 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2698..2827 2..144 144 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2884..2981 47..145 141 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1030..1135 48..145 140 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6808 113..190 137 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1137 114..189 135 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2408 95..190 133 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6775 95..145 133 77.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2663 113..150 119 83.3 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 980..1022 112..154 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1558 113..144 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1593 112..158 115 77.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2350 113..144 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2637 112..152 115 75.6 Plus
TART-C 11124 TART-C TARTC 11124bp 9175..9216 103..144 111 73.8 Plus

BS10231.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:15 Download gff for BS10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34417-RL 14304..15159 4..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:57:59 Download gff for BS10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34417-RW 14033..14888 4..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:57:59 Download gff for BS10231.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6582498..6583353 4..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:15 Download gff for BS10231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6476531..6477386 4..861 99   Plus

BS10231.complete Sequence

875 bp (875 high quality bases) assembled on 2006-03-25

> BS10231.complete
GAAGTTATCAGTCGACATGCCCAATTCGTACCAGAGTCCGCAGCTGAACA
AGCAGGGCAATAGCAATAGCACCACCACCAGCAGTACCTCAGTAAGGAGC
ACCACAGTGGTGCAACAGCAACATCACCAGCAACAACATCAGCAAATCAA
GCCAAGTATTGTGGAAACCCCGGCGACACCACAGCCACAAGTTCCGCCCG
AAGACGAGATACCCCACAACATAGTGTTCAACAATGTGAGCGCCTTTACA
TCGATGAGCAGGCGAAATCACGAGGAGGATTCTCACCAGGGTACGCAATC
GGGTTCCAGGGTGAATCGATTGAGCAAGTGCGATTCGTGGAACCAAATTT
GCCAGCTGCAACAGACTGCGGGTCCAAGTCCGGCCAAATACAACCAGCCC
GGTTCTCCAGGCGAACTGAGACGCACCAAATCGGGACACTCACTCGCCGT
GCCCAAACTCTACGAAGCGGGCATTGATAAGGCCCAGGTCAGCGAGAAAC
AGCGTACGGTGGCTGCCTACTTCTCCGGCCAGAAGTCACCAACTGGCGGC
CAAGTGGAGGAGTTACGAACATCGATGACGACAACGACCTCAAGTCGAAA
ATCGGCCATTAATCGCACGAAAACGAGTGAAAAACTTTCGGCGGCAGCTC
GAAAATCATTGAGTTCGTTGACCACCACATCGAATGGTAACGTTTCCACC
GCCGGTTTGGGCATGGTGGTGCGTGGTGGTGGTGTTGGTGGCATTGGTGG
TGGTGCTGCACTCAGTCGCAGTGCCACCATGCCGCACATCGCGAATCTCA
ATCTGCTGGACGAGAGCAATGTGGAGGATGCCTTCGAGCAGCTAATGATG
GGTGCCTAAAAGCTTTCTAGACCAT

BS10231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-RU 14940 CG34417-PU 14096..14940 15..859 4225 100 Plus
CG34417-RX 14778 CG34417-PX 13934..14778 15..859 4225 100 Plus
CG34417-RW 14427 CG34417-PW 13583..14427 15..859 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-RU 17577 CG34417-RU 14664..15510 15..861 4235 100 Plus
CG34417-RX 17271 CG34417-RX 14393..15239 15..861 4235 100 Plus
CG34417-RW 17173 CG34417-RW 14042..14888 15..861 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6582507..6583353 15..861 4235 100 Plus
Blast to na_te.dros performed 2014-11-27 14:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6897 48..221 212 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6895 30..190 202 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2416 38..144 201 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6970 38..211 185 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2429 9..145 181 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6916 28..145 175 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2410 33..144 174 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1036..1183 17..162 168 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6844 66..190 161 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2478 38..143 158 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2698..2827 2..144 144 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2884..2981 47..145 141 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1030..1135 48..145 140 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6808 113..190 137 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1137 114..189 135 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2408 95..190 133 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6775 95..145 133 77.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2663 113..150 119 83.3 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 980..1022 112..154 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2350 113..144 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2637 112..152 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1558 113..144 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1593 112..158 115 77.4 Plus
TART-C 11124 TART-C TARTC 11124bp 9175..9216 103..144 111 73.8 Plus

BS10231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:21 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RH 14087..14940 4..859 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:48 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RH 14644..15499 4..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:37 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RL 14315..15155 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:21 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RH 14644..15499 4..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:12 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RW 14044..14884 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:12 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
X 6582509..6583349 17..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:37 Download gff for BS10231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6476542..6477382 17..857 100   Plus

BS10231.pep Sequence

Translation from 16 to 858

> BS10231.pep
MPNSYQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSIVE
TPATPQPQVPPEDEIPHNIVFNNVSAFTSMSRRNHEEDSHQGTQSGSRVN
RLSKCDSWNQICQLQQTAGPSPAKYNQPGSPGELRRTKSGHSLAVPKLYE
AGIDKAQVSEKQRTVAAYFSGQKSPTGGQVEELRTSMTTTTSSRKSAINR
TKTSEKLSAAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALS
RSATMPHIANLNLLDESNVEDAFEQLMMGA*

BS10231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-PW 4808 CG34417-PW 4529..4808 1..280 1428 100 Plus
CG34417-PL 4862 CG34417-PL 4583..4862 1..280 1428 100 Plus
CG34417-PX 4925 CG34417-PX 4646..4925 1..280 1428 100 Plus
CG34417-PU 4979 CG34417-PU 4700..4979 1..280 1428 100 Plus
CG34417-PJ 4979 CG34417-PJ 4700..4979 1..280 1428 100 Plus