Clone Sequence Records
BS10233.complete Sequence
1877 bp assembled on 2009-12-07
GenBank Submission: KX806516
> BS10233.complete
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGGAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCACGCCTGACTTCGTGTCCTTCTTTGGATTGGGCGCTGTT
TCCGCCGCCGTGATGTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTC
CATGTTCGCTCGGAACGTGTACAAATTGATTTTCCGTCAGAAGGCGTCCG
AGATGGAAATCATTTGGGTGATGCGAGTCGCCATCATTGTGGTGGGCATC
CTGGCTACCATCATGGCCCTCACCATTCCCTCCATCTACGGTTTGTGGTC
CATGTGCTCGGATCTGGTCTACGTCATTCTGTTCCCGCAGCTACTGATGG
TGGTGCACTTCAAGAAGCACTGCAACACGTACGGCAGCCTGTCGGCATAC
ATTGTGGCCCTGGCCATCCGACTGTCGGGCGGTGAGGCCATCTTGGGACT
GGCTCCATTGATCAAGTATCCCGGCTACGACGAGGAGACCAAGGAGCAGA
TGTTCCCCTTCCGCACCATGGCCATGCTGCTCAGCCTGGTCACGCTCATC
TCGGTCTCCTGGTGGACTAAAATGATGTTTGAGTCCGGCAAGTTGCCGCC
CAGCTACGACTACTTCCGCTGTGTGGTCAATATTCCGGAGGATGTGCAGC
GTGTGGGCGATCCCTCGGAGTCGGGTGAGCAGCTATCCGTGATGGCTGGA
CCGCTGGCCCGATCCTACGGAGCGGCCACCATGGCGGGCAAGGATGAGCG
CAATGGCCGCATCAATCCCGCCCTGGAATCGGACGACGATCTGCCGGTGG
CGGAGGCACGTCGCATCAACCAGGAGACGGCGCAGGCGCAGGTCAAAAAG
ATGCTGGATAACGCCACTGGGGTGAAGCCGTCGGGCGGAGGCGGTGGTCA
CCTCCAGAGCCAAAGCGGGATGGCCATGCCCACGGCGGAGCAGGACAATA
CGGCCTTCTGAAAGCTTTCTAGACCAT
BS10233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 1845 | CG7708-PB | 1..1845 | 17..1861 | 9225 | 100 | Plus |
CG7708-RA | 1845 | CG7708-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 827..2671 | 17..1861 | 9225 | 100 | Plus |
CG7708-RA | 3299 | CG7708-RA | 827..2671 | 17..1861 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18682788..18683373 | 290..875 | 2930 | 100 | Plus |
3R | 32079331 | 3R | 18684272..18684662 | 1471..1861 | 1955 | 100 | Plus |
3R | 32079331 | 3R | 18683500..18683827 | 872..1199 | 1625 | 99.7 | Plus |
3R | 32079331 | 3R | 18682440..18682715 | 17..292 | 1380 | 100 | Plus |
3R | 32079331 | 3R | 18683902..18684175 | 1197..1470 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:26:10 has no hits.
BS10233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:00 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RB | 1304..3147 | 17..1860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:11 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 825..2668 | 17..1860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:02 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RB | 1304..3147 | 17..1860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:24 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 827..2670 | 17..1860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:24 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18682440..18682713 | 17..290 | 100 | -> | Plus |
3R | 18683903..18684175 | 1198..1470 | 100 | -> | Plus |
3R | 18682789..18683373 | 291..875 | 100 | -> | Plus |
3R | 18683504..18683825 | 876..1197 | 100 | -> | Plus |
3R | 18684272..18684661 | 1471..1860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:11 Download gff for
BS10233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14508162..14508435 | 17..290 | 100 | -> | Plus |
arm_3R | 14508511..14509095 | 291..875 | 100 | -> | Plus |
arm_3R | 14509226..14509547 | 876..1197 | 100 | -> | Plus |
arm_3R | 14509625..14509897 | 1198..1470 | 100 | -> | Plus |
arm_3R | 14509994..14510383 | 1471..1860 | 100 | | Plus |
BS10233.3prime Sequence
925 bp (857 high quality bases) assembled on 2006-04-19
> BS10233.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCCGTATTGTCCTGCTCCGCCGTGGGC
ATGGCCATCCCGCTTTGGCTCTGGAGGTGACCACCGCCTCCGCCCGACGG
CTTCACCCCAGTGGCGTTATCCAGCATCTTTTTGACCTGCGCCTGCGCCG
TCTCCTGGTTGATGCGACGTGCCTCCGCCACCGGCAGATCGTCGTCCGAT
TCCAGGGCGGGATTGATGCGGCCATTGCGCTCATCCTTGCCCGCCATGGT
GGCCGCTCCGTAGGATCGGGCCAGCGGTCCAGCCATCACGGATAGCTGCT
CACCCGACTCCGAGGGATCGCCCACACGCTGCACATCCTCCGGAATATTG
ACCACACAGCGGAAGTAGTCGTAGCTGGGCGGCAACTTGCCGGACTCAAA
CATCATTTTAGTCCACCAGGAGACCGAGATGAGCGTGACCAGGCTGAGCA
GCATGGCCATGGTGCGGAAGGGGAACATCTGCTCCTTGGTCTCCTCGTCG
TAGCCGGGATACTTGATCAATGGAGCCAGTCCCAAGATGGCCTCACCGCC
CGACAGTCGGATGGCCAGGGCCACAATGTATGCCGACAGGCTGCCGTACG
TGTTGCAGTGCTTCTTGAAGTGCACCACCATCAGTAGCTGCGGGAACAGA
ATGACGTAGACCAGATCCGAGCACATGGACCACAAACCGTAGATGGAGGG
AATGGTGAGGGCCATGATGGTAGCCAGGATGCCCACCACAATGATGGCGA
CTCGCATCACCCAAATGATTTCCATCTCGGACGCCTTCTGACGGAAAATC
AATTTGTACACGTTCCGAGCGAACATGGAGGCGGCGGAGAGCACCGAGGA
GTCGGCGGAGGACATCACGGCGGCGGAAACAGCGCCCAATCCAAAGAAGG
ACACGAAGTCAGGCGTGAGGTACTG
BS10233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PA | 1845 | CG7708-RA | 937..1845 | 925..17 | 4545 | 100 | Minus |
CG7708-PB | 1845 | CG7708-RB | 937..1845 | 925..17 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 1763..2671 | 925..17 | 4545 | 100 | Minus |
CG7708-RA | 3299 | CG7708-RA | 1763..2671 | 925..17 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18684272..18684662 | 407..17 | 1955 | 100 | Minus |
3R | 32079331 | 3R | 18683902..18684175 | 681..408 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 18683581..18683827 | 925..679 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:10 has no hits.
BS10233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:35 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PA | 937..1845 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:14 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PB | 937..1845 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:28 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 1761..2671 | 13..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:30 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 1763..2673 | 13..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:30 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18683581..18683825 | 681..925 | 100 | -> | Minus |
3R | 18683903..18684175 | 408..680 | 100 | -> | Minus |
3R | 18684272..18684664 | 13..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:28 Download gff for
BS10233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14509303..14509547 | 681..925 | 100 | -> | Minus |
arm_3R | 14509625..14509897 | 408..680 | 100 | -> | Minus |
arm_3R | 14509994..14510386 | 13..407 | 99 | | Minus |
BS10233.5prime Sequence
962 bp (769 high quality bases) assembled on 2006-04-19
> BS10233.5prime
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGNAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCA
BS10233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PA | 1845 | CG7708-RA | 1..946 | 17..962 | 4711 | 99.8 | Plus |
CG7708-PB | 1845 | CG7708-RB | 1..946 | 17..962 | 4711 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 827..1772 | 17..962 | 4719 | 99.9 | Plus |
CG7708-RA | 3299 | CG7708-RA | 827..1772 | 17..962 | 4719 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18682788..18683373 | 290..875 | 2930 | 100 | Plus |
3R | 32079331 | 3R | 18682440..18682715 | 17..292 | 1380 | 100 | Plus |
3R | 32079331 | 3R | 18683500..18683590 | 872..962 | 429 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:20 has no hits.
BS10233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:37 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:15 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PB | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:12 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 822..1769 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:25 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 824..1771 | 10..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:25 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18682789..18683373 | 291..875 | 100 | -> | Plus |
3R | 18682437..18682713 | 10..290 | 98 | -> | Plus |
3R | 18683504..18683589 | 876..961 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:12 Download gff for
BS10233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14508159..14508435 | 10..290 | 98 | -> | Plus |
arm_3R | 14508511..14509095 | 291..875 | 100 | -> | Plus |
arm_3R | 14509226..14509311 | 876..961 | 98 | | Plus |
BS10233.pep Sequence
Translation from 16 to 1860
> BS10233.pep
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAF*
BS10233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PB | 614 | CG7708-PB | 1..614 | 1..614 | 3175 | 100 | Plus |
CG7708-PA | 614 | CG7708-PA | 1..614 | 1..614 | 3175 | 100 | Plus |
CG6723-PA | 587 | CG6723-PA | 20..407 | 8..387 | 198 | 22.9 | Plus |
CG10444-PA | 587 | CG10444-PA | 12..453 | 5..434 | 168 | 19.4 | Plus |