Clone BS10233 Report

Search the DGRC for BS10233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7708-RA
Protein status:BS10233.pep: full length peptide match
Sequenced Size:1877

Clone Sequence Records

BS10233.complete Sequence

1877 bp assembled on 2009-12-07

GenBank Submission: KX806516

> BS10233.complete
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGGAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCACGCCTGACTTCGTGTCCTTCTTTGGATTGGGCGCTGTT
TCCGCCGCCGTGATGTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTC
CATGTTCGCTCGGAACGTGTACAAATTGATTTTCCGTCAGAAGGCGTCCG
AGATGGAAATCATTTGGGTGATGCGAGTCGCCATCATTGTGGTGGGCATC
CTGGCTACCATCATGGCCCTCACCATTCCCTCCATCTACGGTTTGTGGTC
CATGTGCTCGGATCTGGTCTACGTCATTCTGTTCCCGCAGCTACTGATGG
TGGTGCACTTCAAGAAGCACTGCAACACGTACGGCAGCCTGTCGGCATAC
ATTGTGGCCCTGGCCATCCGACTGTCGGGCGGTGAGGCCATCTTGGGACT
GGCTCCATTGATCAAGTATCCCGGCTACGACGAGGAGACCAAGGAGCAGA
TGTTCCCCTTCCGCACCATGGCCATGCTGCTCAGCCTGGTCACGCTCATC
TCGGTCTCCTGGTGGACTAAAATGATGTTTGAGTCCGGCAAGTTGCCGCC
CAGCTACGACTACTTCCGCTGTGTGGTCAATATTCCGGAGGATGTGCAGC
GTGTGGGCGATCCCTCGGAGTCGGGTGAGCAGCTATCCGTGATGGCTGGA
CCGCTGGCCCGATCCTACGGAGCGGCCACCATGGCGGGCAAGGATGAGCG
CAATGGCCGCATCAATCCCGCCCTGGAATCGGACGACGATCTGCCGGTGG
CGGAGGCACGTCGCATCAACCAGGAGACGGCGCAGGCGCAGGTCAAAAAG
ATGCTGGATAACGCCACTGGGGTGAAGCCGTCGGGCGGAGGCGGTGGTCA
CCTCCAGAGCCAAAGCGGGATGGCCATGCCCACGGCGGAGCAGGACAATA
CGGCCTTCTGAAAGCTTTCTAGACCAT

BS10233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 1845 CG7708-PB 1..1845 17..1861 9225 100 Plus
CG7708-RA 1845 CG7708-PA 1..1845 17..1861 9225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 827..2671 17..1861 9225 100 Plus
CG7708-RA 3299 CG7708-RA 827..2671 17..1861 9225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18682788..18683373 290..875 2930 100 Plus
3R 32079331 3R 18684272..18684662 1471..1861 1955 100 Plus
3R 32079331 3R 18683500..18683827 872..1199 1625 99.7 Plus
3R 32079331 3R 18682440..18682715 17..292 1380 100 Plus
3R 32079331 3R 18683902..18684175 1197..1470 1370 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:26:10 has no hits.

BS10233.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:00 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1304..3147 17..1860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:11 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 825..2668 17..1860 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:02 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1304..3147 17..1860 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:24 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 827..2670 17..1860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:24 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18682440..18682713 17..290 100 -> Plus
3R 18683903..18684175 1198..1470 100 -> Plus
3R 18682789..18683373 291..875 100 -> Plus
3R 18683504..18683825 876..1197 100 -> Plus
3R 18684272..18684661 1471..1860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:11 Download gff for BS10233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14508162..14508435 17..290 100 -> Plus
arm_3R 14508511..14509095 291..875 100 -> Plus
arm_3R 14509226..14509547 876..1197 100 -> Plus
arm_3R 14509625..14509897 1198..1470 100 -> Plus
arm_3R 14509994..14510383 1471..1860 100   Plus

BS10233.3prime Sequence

925 bp (857 high quality bases) assembled on 2006-04-19

> BS10233.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCCGTATTGTCCTGCTCCGCCGTGGGC
ATGGCCATCCCGCTTTGGCTCTGGAGGTGACCACCGCCTCCGCCCGACGG
CTTCACCCCAGTGGCGTTATCCAGCATCTTTTTGACCTGCGCCTGCGCCG
TCTCCTGGTTGATGCGACGTGCCTCCGCCACCGGCAGATCGTCGTCCGAT
TCCAGGGCGGGATTGATGCGGCCATTGCGCTCATCCTTGCCCGCCATGGT
GGCCGCTCCGTAGGATCGGGCCAGCGGTCCAGCCATCACGGATAGCTGCT
CACCCGACTCCGAGGGATCGCCCACACGCTGCACATCCTCCGGAATATTG
ACCACACAGCGGAAGTAGTCGTAGCTGGGCGGCAACTTGCCGGACTCAAA
CATCATTTTAGTCCACCAGGAGACCGAGATGAGCGTGACCAGGCTGAGCA
GCATGGCCATGGTGCGGAAGGGGAACATCTGCTCCTTGGTCTCCTCGTCG
TAGCCGGGATACTTGATCAATGGAGCCAGTCCCAAGATGGCCTCACCGCC
CGACAGTCGGATGGCCAGGGCCACAATGTATGCCGACAGGCTGCCGTACG
TGTTGCAGTGCTTCTTGAAGTGCACCACCATCAGTAGCTGCGGGAACAGA
ATGACGTAGACCAGATCCGAGCACATGGACCACAAACCGTAGATGGAGGG
AATGGTGAGGGCCATGATGGTAGCCAGGATGCCCACCACAATGATGGCGA
CTCGCATCACCCAAATGATTTCCATCTCGGACGCCTTCTGACGGAAAATC
AATTTGTACACGTTCCGAGCGAACATGGAGGCGGCGGAGAGCACCGAGGA
GTCGGCGGAGGACATCACGGCGGCGGAAACAGCGCCCAATCCAAAGAAGG
ACACGAAGTCAGGCGTGAGGTACTG

BS10233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PA 1845 CG7708-RA 937..1845 925..17 4545 100 Minus
CG7708-PB 1845 CG7708-RB 937..1845 925..17 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 1763..2671 925..17 4545 100 Minus
CG7708-RA 3299 CG7708-RA 1763..2671 925..17 4545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18684272..18684662 407..17 1955 100 Minus
3R 32079331 3R 18683902..18684175 681..408 1370 100 Minus
3R 32079331 3R 18683581..18683827 925..679 1235 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:45:10 has no hits.

BS10233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:35 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PA 937..1845 17..925 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:14 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PB 937..1845 17..925 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:28 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1761..2671 13..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:30 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1763..2673 13..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:30 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18683581..18683825 681..925 100 -> Minus
3R 18683903..18684175 408..680 100 -> Minus
3R 18684272..18684664 13..407 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:28 Download gff for BS10233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14509303..14509547 681..925 100 -> Minus
arm_3R 14509625..14509897 408..680 100 -> Minus
arm_3R 14509994..14510386 13..407 99   Minus

BS10233.5prime Sequence

962 bp (769 high quality bases) assembled on 2006-04-19

> BS10233.5prime
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGNAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCA

BS10233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PA 1845 CG7708-RA 1..946 17..962 4711 99.8 Plus
CG7708-PB 1845 CG7708-RB 1..946 17..962 4711 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 827..1772 17..962 4719 99.9 Plus
CG7708-RA 3299 CG7708-RA 827..1772 17..962 4719 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18682788..18683373 290..875 2930 100 Plus
3R 32079331 3R 18682440..18682715 17..292 1380 100 Plus
3R 32079331 3R 18683500..18683590 872..962 429 97.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:11:20 has no hits.

BS10233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:37 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PA 1..945 17..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:15 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PB 1..945 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:12 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 822..1769 10..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:25 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 824..1771 10..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:25 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18682789..18683373 291..875 100 -> Plus
3R 18682437..18682713 10..290 98 -> Plus
3R 18683504..18683589 876..961 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:12 Download gff for BS10233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14508159..14508435 10..290 98 -> Plus
arm_3R 14508511..14509095 291..875 100 -> Plus
arm_3R 14509226..14509311 876..961 98   Plus

BS10233.pep Sequence

Translation from 16 to 1860

> BS10233.pep
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAF*

BS10233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PB 614 CG7708-PB 1..614 1..614 3175 100 Plus
CG7708-PA 614 CG7708-PA 1..614 1..614 3175 100 Plus
CG6723-PA 587 CG6723-PA 20..407 8..387 198 22.9 Plus
CG10444-PA 587 CG10444-PA 12..453 5..434 168 19.4 Plus