Clone Sequence Records
BS10234.3prime Sequence
878 bp (833 high quality bases) assembled on 2006-04-19
> BS10234.3prime
ATGGTCTAGAAAGCTTCTAGATATTCCCAGCGCTGCCGAAGAACTGAAAG
TTGTTGAAGTTCACCGGCGTTTTCGGGCTGGGCAGATACAGAAACTCATC
GTTCTGCAGCTGCGATTGCGTCAAGTTTGGTTCACTGGCACTGCGATGAA
TTTTGGGCAAAGTGCGCAGCATGTTCTCCAGCATATTGAGCAGCGGCCTA
AAGAGCGGTCGATCCTTGGGGGTATACTTAATGCAATCCTCGGCCAAGCG
CTTCAATGCCTGCGGCGCATCCGAGCGCACTTGACTCATGTCCGGACGCA
GAAGTCCTCGCCCCACCATAAACAGGATCTGATCCTTGTTGCTAATATGA
CCGTAGGGCAAGCACTCCGCCAACAGTTCGTACATCACGATACCAAAGGC
ATAAACGTCCGACTGGAAGGAGTAGGGGTTTAGCTCCTGCATGCGAATCA
CCTCTGGAGCCATCCATAAAATACTGCCCGTGGGTTGATTGGCTTGCTTT
TCACCCGACCATCGAGTTTTCGCAGTGGCCAATCCGAAGTCGCCTATCTT
CACGGAAAGATCCTCGTGCAAAAAGATGTTGTTTGACTTGAGGTCTCTAT
GAATGATATTCTTGGCATGCAGGTAATCCATGCCCTGGGCCACCTGACGT
CCGATATCGATGAGCGTGTTCAATTTAAACTTGGTTTCGCTGACATGGAC
GTGCTTGTAGAGACTGCTGCCCTCGCACCACTGGGTCACAATCGCTAGAG
ATGGTTTGGATACACAGCCCATGAAGAGGAGGATATTGCAGTGGCGCGTC
TTTTTCAGCATGGCCACCTCGTTCTTAAACGCCTGCAACTGGGCGGGACT
CGGTGTCTTCACGTTGAGTGTCTTTACG
BS10234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2845-PB | 2349 | phl-RB | 1488..2349 | 878..17 | 4310 | 100 | Minus |
| CG2845-PA | 2220 | phl-RA | 1359..2220 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 2947..3809 | 878..16 | 4315 | 100 | Minus |
| phl-RA | 3247 | CG2845-RA | 1947..2809 | 878..16 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2342849..2343432 | 599..16 | 2920 | 100 | Minus |
| X | 23542271 | X | 2342505..2342786 | 878..597 | 1410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:55:20 has no hits.
BS10234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:38 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-PA | 1359..2220 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:17 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2845-PA | 1359..2220 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:26:16 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RB | 2248..3119 | 8..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:54 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 1947..2818 | 8..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:54 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2342505..2342786 | 597..878 | 100 | -> | Minus |
| X | 2342852..2343441 | 8..596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:26:16 Download gff for
BS10234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2236538..2236819 | 597..878 | 100 | -> | Minus |
| arm_X | 2236885..2237474 | 8..596 | 99 | | Minus |
BS10234.5prime Sequence
865 bp (828 high quality bases) assembled on 2006-04-19
> BS10234.5prime
GAAGTTATCAGTCGACATGTCCAGCGAGTCCTCCACCGAAGGCGACAGCG
ATCTATACGATCCTTTGGCCGAGGAGCTGCACAACGTCCAGTTGGTCAAA
CATGTGACCCGCGAGAATATTGATGCCCTGAATGCCAAGTTTGCCAACCT
GCAGGAGCCACCAGCCATGTACTTAATAGAATACCAGGAGTTGACCTCCA
AGCTCCACGAACTGGAGGCCAAGGAGCAGGAACTAATGGAGCGACTGAAC
TCGCAGGACCAGCAGGAGGACTCCTCCTTGGTCGAGCGGTTCAAGGAGCA
GCCCCACTATCAAAATCAAACTCAAATCCTGCAGCAACAACGGCAATTGG
CGCGAGTGCACCACGGCAACGATCTAACCGATAGCTTGGGCTCTCAGCCG
GGCAGCCAATGTGGAACTTTGACCCGTCAGCCCAAGATCCTTTTGCGAGC
CCACCTGCCCAATCAACAGCGCACTTCAGTGGAGGTAATTTCGGGAGTAC
GACTATGTGATGCCCTCATGAAGGCCCTGAAACTCCGGCAACTAACGCCG
GATATGTGCGAAGTAAGCACAACTCATTCCGGAAGACATATCATACCCTG
GCACACGGATATCGGCACTCTGCATGTGGAGGAGATCTTTGTCAGGCTGC
TGGATAAGTTTCCCATTAGGACACACATCAAGCACCAGATCATACGGAAG
ACCTTCTTCTCGTTGGTATTCTGCGAGGGCTGTCGAAGGCTTCTGTTCAC
CGGGTTCTACTGTAGCCAGTGTAATTTTCGATTCCATCAGAGGTGTGCCA
ATAGAGTGCCGATGCTGTGCCAGCCCTTTCCCATGGATAGCTACTATCAG
CTACTGCTGGCCGAG
BS10234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2845-PA | 2220 | phl-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
| CG2845-PB | 2349 | phl-RB | 291..978 | 178..865 | 3440 | 100 | Plus |
| CG2845-PB | 2349 | phl-RB | 1..163 | 17..179 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 1588..2437 | 16..865 | 4250 | 100 | Plus |
| phl-RA | 3247 | CG2845-RA | 588..1437 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2341176..2341863 | 178..865 | 3440 | 100 | Plus |
| X | 23542271 | X | 2340885..2341048 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:37:09 has no hits.
BS10234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:39 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:18 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2845-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:48 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 754..1609 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:13 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 582..1437 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:13 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2340879..2341048 | 9..179 | 97 | -> | Plus |
| X | 2341178..2341863 | 180..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:48 Download gff for
BS10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2234912..2235081 | 9..179 | 97 | -> | Plus |
| arm_X | 2235211..2235896 | 180..865 | 100 | | Plus |
BS10234.complete Sequence
2252 bp assembled on 2007-11-30
GenBank Submission: FJ636610
> BS10234.complete
GAAGTTATCAGTCGACATGTCCAGCGAGTCCTCCACCGAAGGCGACAGCG
ATCTATACGATCCTTTGGCCGAGGAGCTGCACAACGTCCAGTTGGTCAAA
CATGTGACCCGCGAGAATATTGATGCCCTGAATGCCAAGTTTGCCAACCT
GCAGGAGCCACCAGCCATGTACTTAATAGAATACCAGGAGTTGACCTCCA
AGCTCCACGAACTGGAGGCCAAGGAGCAGGAACTAATGGAGCGACTGAAC
TCGCAGGACCAGCAGGAGGACTCCTCCTTGGTCGAGCGGTTCAAGGAGCA
GCCCCACTATCAAAATCAAACTCAAATCCTGCAGCAACAACGGCAATTGG
CGCGAGTGCACCACGGCAACGATCTAACCGATAGCTTGGGCTCTCAGCCG
GGCAGCCAATGTGGAACTTTGACCCGTCAGCCCAAGATCCTTTTGCGAGC
CCACCTGCCCAATCAACAGCGCACTTCAGTGGAGGTAATTTCGGGAGTAC
GACTATGTGATGCCCTCATGAAGGCCCTGAAACTCCGGCAACTAACGCCG
GATATGTGCGAAGTAAGCACAACTCATTCCGGAAGACATATCATACCCTG
GCACACGGATATCGGCACTCTGCATGTGGAGGAGATCTTTGTCAGGCTGC
TGGATAAGTTTCCCATTAGGACACACATCAAGCACCAGATCATACGGAAG
ACCTTCTTCTCGTTGGTATTCTGCGAGGGCTGTCGAAGGCTTCTGTTCAC
CGGGTTCTACTGTAGCCAGTGTAATTTTCGATTCCATCAGAGGTGTGCCA
ATAGAGTGCCGATGCTGTGCCAGCCCTTTCCCATGGATAGCTACTATCAG
CTACTGCTGGCCGAGAATCCGGATAATGGCGTTGGTTTCCCCGGCAGAGG
CACTGCTGTCCGCTTCAATATGAGCAGCCGGAGTCGCAGTCGTCGTTGCA
GCAGCAGTGGCAGCAGCAGCAGCTCGAAGCCACCATCTTCATCCTCCGGC
AATCATCGACAGGGTCGTCCGCCGAGGATCAGCCAAGACGATCGATCCAA
TTCCGCGCCAAATGTGTGCATCAACAACATTCGATCGGTCACAAGCGAAG
TGCAGCGCAGTTTGATAATGCAGGCCAGACCTCCTTTGCCGCATCCGTGC
ACAGATCACTCCAACTCCACGCAAGCGTCGCCCACGAGCACCTTGAAACA
CAATCGTCCCAGGGCCAGGTCCGCCGATGAGAGCAATAAAAATCTGCTTT
TAAGAGACGCCAAAAGTTCCGAGGAAAACTGGAATATTCTGGCGGAGGAG
ATTTTAATTGGGCCGCGCATCGGATCGGGTTCCTTTGGAACCGTTTATCG
CGCCCATTGGCACGGTCCCGTGGCCGTAAAGACACTCAACGTGAAGACAC
CGAGTCCCGCCCAGTTGCAGGCGTTTAAGAACGAGGTGGCCATGCTGAAA
AAGACGCGCCACTGCAATATCCTCCTCTTCATGGGCTGTGTATCCAAACC
ATCTCTAGCGATTGTGACCCAGTGGTGCGAGGGCAGCAGTCTCTACAAGC
ACGTCCATGTCAGCGAAACCAAGTTTAAATTGAACACGCTCATCGATATC
GGACGTCAGGTGGCCCAGGGCATGGATTACCTGCATGCCAAGAATATCAT
TCATAGAGACCTCAAGTCAAACAACATCTTTTTGCACGAGGATCTTTCCG
TGAAGATAGGCGACTTCGGATTGGCCACTGCGAAAACTCGATGGTCGGGT
GAAAAGCAAGCCAATCAACCCACGGGCAGTATTTTATGGATGGCTCCAGA
GGTGATTCGCATGCAGGAGCTAAACCCCTACTCCTTCCAGTCGGACGTTT
ATGCCTTTGGTATCGTGATGTACGAACTGTTGGCGGAGTGCTTGCCCTAC
GGTCATATTAGCAACAAGGATCAGATCCTGTTTATGGTGGGGCGAGGACT
TCTGCGTCCGGACATGAGTCAAGTGCGCTCGGATGCGCCGCAGGCATTGA
AGCGCTTGGCCGAGGATTGCATTAAGTATACCCCCAAGGATCGACCGCTC
TTTAGGCCGCTGCTCAATATGCTGGAGAACATGCTGCGCACTTTGCCCAA
AATTCATCGCAGTGCCAGTGAACCAAACTTGACGCAATCGCAGCTGCAGA
ACGATGAGTTTCTGTATCTGCCCAGCCCGAAAACGCCGGTGAACTTCAAC
AACTTTCAGTTCTTCGGCAGCGCTGGGAATATCTAGAAGCTTTCTAGACC
AT
BS10234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 2220 | CG2845-PE | 1..2220 | 17..2236 | 11100 | 100 | Plus |
| phl-RA | 2220 | CG2845-PA | 1..2220 | 17..2236 | 11100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 1588..3809 | 16..2237 | 11110 | 100 | Plus |
| phl-RA | 3247 | CG2845-RA | 588..2809 | 16..2237 | 11110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2341176..2342139 | 178..1141 | 4820 | 100 | Plus |
| X | 23542271 | X | 2342849..2343432 | 1654..2237 | 2920 | 100 | Plus |
| X | 23542271 | X | 2342412..2342786 | 1282..1656 | 1875 | 100 | Plus |
| X | 23542271 | X | 2340885..2341048 | 16..179 | 820 | 100 | Plus |
| X | 23542271 | X | 2342203..2342344 | 1141..1282 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:15:36 has no hits.
BS10234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:30 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RC | 1..2220 | 17..2236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:47 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RC | 424..2660 | 9..2245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:00 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 761..2980 | 17..2236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:20 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RC | 431..2650 | 17..2236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:45 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 589..2808 | 17..2236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:45 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2340886..2341048 | 17..179 | 100 | -> | Plus |
| X | 2341178..2342139 | 180..1141 | 100 | -> | Plus |
| X | 2342204..2342344 | 1142..1282 | 100 | -> | Plus |
| X | 2342413..2342786 | 1283..1656 | 100 | -> | Plus |
| X | 2342852..2343431 | 1657..2236 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:00 Download gff for
BS10234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2234919..2235081 | 17..179 | 100 | -> | Plus |
| arm_X | 2235211..2236172 | 180..1141 | 100 | -> | Plus |
| arm_X | 2236237..2236377 | 1142..1282 | 100 | -> | Plus |
| arm_X | 2236446..2236819 | 1283..1656 | 100 | -> | Plus |
| arm_X | 2236885..2237464 | 1657..2236 | 100 | | Plus |
BS10234.pep Sequence
Translation from 16 to 2235
> BS10234.pep
MSSESSTEGDSDLYDPLAEELHNVQLVKHVTRENIDALNAKFANLQEPPA
MYLIEYQELTSKLHELEAKEQELMERLNSQDQQEDSSLVERFKEQPHYQN
QTQILQQQRQLARVHHGNDLTDSLGSQPGSQCGTLTRQPKILLRAHLPNQ
QRTSVEVISGVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIG
TLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYCS
QCNFRFHQRCANRVPMLCQPFPMDSYYQLLLAENPDNGVGFPGRGTAVRF
NMSSRSRSRRCSSSGSSSSSKPPSSSSGNHRQGRPPRISQDDRSNSAPNV
CINNIRSVTSEVQRSLIMQARPPLPHPCTDHSNSTQASPTSTLKHNRPRA
RSADESNKNLLLRDAKSSEENWNILAEEILIGPRIGSGSFGTVYRAHWHG
PVAVKTLNVKTPSPAQLQAFKNEVAMLKKTRHCNILLFMGCVSKPSLAIV
TQWCEGSSLYKHVHVSETKFKLNTLIDIGRQVAQGMDYLHAKNIIHRDLK
SNNIFLHEDLSVKIGDFGLATAKTRWSGEKQANQPTGSILWMAPEVIRMQ
ELNPYSFQSDVYAFGIVMYELLAECLPYGHISNKDQILFMVGRGLLRPDM
SQVRSDAPQALKRLAEDCIKYTPKDRPLFRPLLNMLENMLRTLPKIHRSA
SEPNLTQSQLQNDEFLYLPSPKTPVNFNNFQFFGSAGNI*
BS10234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-PE | 739 | CG2845-PE | 1..739 | 1..739 | 3883 | 100 | Plus |
| phl-PA | 739 | CG2845-PA | 1..739 | 1..739 | 3883 | 100 | Plus |
| ksr-PD | 966 | CG2899-PD | 625..961 | 376..708 | 483 | 37.3 | Plus |
| ksr-PC | 966 | CG2899-PC | 625..961 | 376..708 | 483 | 37.3 | Plus |
| ksr-PB | 966 | CG2899-PB | 625..961 | 376..708 | 483 | 37.3 | Plus |
