Clone BS10235 Report

Search the DGRC for BS10235

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10235.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS10235.3prime Sequence

825 bp (823 high quality bases) assembled on 2006-04-19

> BS10235.3prime
ATGGTCTAGAAAGCTTTCATGTCGCCACATCACTCATACGCAGCGTTGTC
CAGCTGGAGAGATACGCCAGCGCGAGCATGGCCGCGTAGAGCAGCCGGTC
GCATCCGGCAAACTGGCCAGGACCATGTCCACTTCTGGCCGCCGCACTTG
TGCTCTCGGGCCAAACGACCTCGACTTCGGACATTTTGAAAATGCTCAGC
AGTCGGTGGGATTGGAGCTCGCTGTGCTCGCTATTGATTTGATGACTGAT
GGTCTTCAGTATCGCGGTGCACTCGTCCTTCTCCTTACGCAGCAGCTCAA
TATCCTTCAGTTTGCCATCGTGTGGCAGCCGCGCAGCAATGATGATGTTC
TCCTCGGTCATATTGAACAGCGTGAGGGTGCACTGCGTCTGATTATCGAT
GTATGTGGTTACGTACTGCTGCAGGGCCCGCACGGCATCCTGCACCCCCA
GGTTGGTGTGGGGCCTCAGCAGCGCCTCATCCGCGGCACTGTATCCGAGC
AGCAGGAATATCCCACCTGGCAGAATGTACTCCCCGAGCGGCGGTTTCAT
GCAGATGAAGCGGCCCGAGTAGCACAAACAGCGTCCGCGGAACGCCTGGT
AGGCGGGGGAGGCGTGGCTGTAAAAGGCGAGGGCGGTGCGGCAGGGGGCG
AATGGCACGCAGAGGGCGTGGCAGGTGAGGATGAGCGACTCGCCGCAGCT
GCACAGCTCACTGCACTCGACGTCGTCCAAGGAGTAGATTCGCTTGCTGC
TGCCTTCCCGAATAAGTTGATCTGACTGACGTGGTCGCTGGACAACGCAG
TTTCTTGGCGGCTGTGTTGTTGTCG

BS10235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4342-PA 819 CG4342-RA 11..819 825..17 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-RJ 6630 CG43224-RJ 3504..4316 825..13 4050 99.9 Minus
Gfrl-RI 6279 CG43224-RI 3153..3965 825..13 4050 99.9 Minus
Gfrl-RH 7235 CG43224-RH 4109..4921 825..13 4050 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20381310..20381576 13..279 1320 99.6 Plus
3R 32079331 3R 20383108..20383333 514..739 1130 100 Plus
3R 32079331 3R 20382168..20382298 389..519 655 100 Plus
3R 32079331 3R 20381961..20382076 277..392 580 100 Plus
3R 32079331 3R 20383804..20383868 740..804 325 100 Plus
Blast to na_te.dros performed on 2015-02-03 16:22:30 has no hits.

BS10235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:40 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4342-PA 11..819 17..825 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:21 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4342-PA 11..819 17..825 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:11 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4109..4921 13..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:28 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4109..4921 13..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:28 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20381310..20381574 13..277 99 <- Plus
3R 20381962..20382072 278..388 100 <- Plus
3R 20382168..20382295 389..516 100 <- Plus
3R 20383111..20383333 517..739 100 <- Plus
3R 20383804..20383868 740..804 100 <- Plus
3R 20385652..20385672 805..825 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:11 Download gff for BS10235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16207032..16207296 13..277 99 <- Plus
arm_3R 16207684..16207794 278..388 100 <- Plus
arm_3R 16207890..16208017 389..516 100 <- Plus
arm_3R 16208833..16209055 517..739 100 <- Plus
arm_3R 16209526..16209590 740..804 100 <- Plus
arm_3R 16211374..16211394 805..825 100   Plus

BS10235.5prime Sequence

849 bp (848 high quality bases) assembled on 2006-04-19

> BS10235.5prime
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACATGAAAGCTTTCTAGACC

BS10235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4342-PA 819 CG4342-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-RJ 6630 CG43224-RJ 3494..4316 17..839 4100 99.9 Plus
Gfrl-RI 6279 CG43224-RI 3143..3965 17..839 4100 99.9 Plus
Gfrl-RH 7235 CG43224-RH 4099..4921 17..839 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20381310..20381576 839..573 1320 99.6 Minus
3R 32079331 3R 20383108..20383333 338..113 1130 100 Minus
3R 32079331 3R 20382168..20382298 463..333 655 100 Minus
3R 32079331 3R 20381961..20382076 575..460 580 100 Minus
3R 32079331 3R 20383804..20383868 112..48 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:09:10 has no hits.

BS10235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:42 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4342-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:22 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4342-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:57 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4092..4921 9..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:04 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4092..4921 9..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:04 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20383111..20383333 113..335 100 <- Minus
3R 20383804..20383868 48..112 100 <- Minus
3R 20382168..20382295 336..463 100 <- Minus
3R 20381310..20381574 575..839 99 <- Minus
3R 20381962..20382072 464..574 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:57 Download gff for BS10235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16207684..16207794 464..574 100 <- Minus
arm_3R 16207890..16208017 336..463 100 <- Minus
arm_3R 16207032..16207296 575..839 99 <- Minus
arm_3R 16208833..16209055 113..335 100 <- Minus
arm_3R 16209526..16209590 48..112 100 <- Minus

BS10235.complete Sequence

851 bp (851 high quality bases) assembled on 2006-03-25

> BS10235.complete
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACATGAAAGCTTTCTAGACCA
T

BS10235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-RL 3654 CG43224-PL 2821..3643 17..839 4100 99.9 Plus
Gfrl-RJ 3639 CG43224-PJ 2821..3639 17..835 4095 100 Plus
Gfrl-RI 3507 CG43224-PI 2689..3507 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-RJ 6630 CG43224-RJ 3494..4316 17..839 4100 99.9 Plus
Gfrl-RI 6279 CG43224-RI 3143..3965 17..839 4100 99.9 Plus
Gfrl-RH 7235 CG43224-RH 4099..4921 17..839 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20381310..20381576 839..573 1320 99.6 Minus
3R 32079331 3R 20383108..20383333 338..113 1130 100 Minus
3R 32079331 3R 20382168..20382298 463..333 655 100 Minus
3R 32079331 3R 20381961..20382076 575..460 580 100 Minus
3R 32079331 3R 20383804..20383868 112..48 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:16:32 has no hits.

BS10235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:22 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
CG4342-RA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:50 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
mun-RB 1524..2353 9..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:17:18 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4099..4916 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:22 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
CG4342-RA 108..937 9..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:39 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 4099..4916 17..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:39 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20383111..20383333 113..335 100 <- Minus
3R 20383804..20383868 48..112 100 <- Minus
3R 20385652..20385682 17..47 100   Minus
3R 20381315..20381574 575..834 100 <- Minus
3R 20382168..20382295 336..463 100 <- Minus
3R 20381962..20382072 464..574 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:17:18 Download gff for BS10235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16207037..16207296 575..834 100 <- Minus
arm_3R 16207684..16207794 464..574 100 <- Minus
arm_3R 16207890..16208017 336..463 100 <- Minus
arm_3R 16208833..16209055 113..335 100 <- Minus
arm_3R 16209526..16209590 48..112 100 <- Minus
arm_3R 16211374..16211404 17..47 100   Minus

BS10235.pep Sequence

Translation from 16 to 834

> BS10235.pep
MATTTTTQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGES
LILTCHALCVPFAPCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPL
GEYILPGGIFLLLGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQT
QCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQI
NSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLY
AAMLALAYLSSWTTLRMSDVAT*

BS10235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-PF 864 CG43224-PF 593..864 1..272 1426 100 Plus
Gfrl-PM 1042 CG43224-PM 771..1042 1..272 1426 100 Plus
Gfrl-PH 1101 CG43224-PH 830..1101 1..272 1426 100 Plus
Gfrl-PI 1168 CG43224-PI 897..1168 1..272 1426 100 Plus
Gfrl-PJ 1212 CG43224-PJ 941..1212 1..272 1426 100 Plus