Clone Sequence Records
BS10235.3prime Sequence
825 bp (823 high quality bases) assembled on 2006-04-19
> BS10235.3prime
ATGGTCTAGAAAGCTTTCATGTCGCCACATCACTCATACGCAGCGTTGTC
CAGCTGGAGAGATACGCCAGCGCGAGCATGGCCGCGTAGAGCAGCCGGTC
GCATCCGGCAAACTGGCCAGGACCATGTCCACTTCTGGCCGCCGCACTTG
TGCTCTCGGGCCAAACGACCTCGACTTCGGACATTTTGAAAATGCTCAGC
AGTCGGTGGGATTGGAGCTCGCTGTGCTCGCTATTGATTTGATGACTGAT
GGTCTTCAGTATCGCGGTGCACTCGTCCTTCTCCTTACGCAGCAGCTCAA
TATCCTTCAGTTTGCCATCGTGTGGCAGCCGCGCAGCAATGATGATGTTC
TCCTCGGTCATATTGAACAGCGTGAGGGTGCACTGCGTCTGATTATCGAT
GTATGTGGTTACGTACTGCTGCAGGGCCCGCACGGCATCCTGCACCCCCA
GGTTGGTGTGGGGCCTCAGCAGCGCCTCATCCGCGGCACTGTATCCGAGC
AGCAGGAATATCCCACCTGGCAGAATGTACTCCCCGAGCGGCGGTTTCAT
GCAGATGAAGCGGCCCGAGTAGCACAAACAGCGTCCGCGGAACGCCTGGT
AGGCGGGGGAGGCGTGGCTGTAAAAGGCGAGGGCGGTGCGGCAGGGGGCG
AATGGCACGCAGAGGGCGTGGCAGGTGAGGATGAGCGACTCGCCGCAGCT
GCACAGCTCACTGCACTCGACGTCGTCCAAGGAGTAGATTCGCTTGCTGC
TGCCTTCCCGAATAAGTTGATCTGACTGACGTGGTCGCTGGACAACGCAG
TTTCTTGGCGGCTGTGTTGTTGTCG
BS10235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4342-PA | 819 | CG4342-RA | 11..819 | 825..17 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfrl-RJ | 6630 | CG43224-RJ | 3504..4316 | 825..13 | 4050 | 99.9 | Minus |
Gfrl-RI | 6279 | CG43224-RI | 3153..3965 | 825..13 | 4050 | 99.9 | Minus |
Gfrl-RH | 7235 | CG43224-RH | 4109..4921 | 825..13 | 4050 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20381310..20381576 | 13..279 | 1320 | 99.6 | Plus |
3R | 32079331 | 3R | 20383108..20383333 | 514..739 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 20382168..20382298 | 389..519 | 655 | 100 | Plus |
3R | 32079331 | 3R | 20381961..20382076 | 277..392 | 580 | 100 | Plus |
3R | 32079331 | 3R | 20383804..20383868 | 740..804 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:22:30 has no hits.
BS10235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:40 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-PA | 11..819 | 17..825 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:21 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-PA | 11..819 | 17..825 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:11 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4109..4921 | 13..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:28 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4109..4921 | 13..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:28 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20381310..20381574 | 13..277 | 99 | <- | Plus |
3R | 20381962..20382072 | 278..388 | 100 | <- | Plus |
3R | 20382168..20382295 | 389..516 | 100 | <- | Plus |
3R | 20383111..20383333 | 517..739 | 100 | <- | Plus |
3R | 20383804..20383868 | 740..804 | 100 | <- | Plus |
3R | 20385652..20385672 | 805..825 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:11 Download gff for
BS10235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16207032..16207296 | 13..277 | 99 | <- | Plus |
arm_3R | 16207684..16207794 | 278..388 | 100 | <- | Plus |
arm_3R | 16207890..16208017 | 389..516 | 100 | <- | Plus |
arm_3R | 16208833..16209055 | 517..739 | 100 | <- | Plus |
arm_3R | 16209526..16209590 | 740..804 | 100 | <- | Plus |
arm_3R | 16211374..16211394 | 805..825 | 100 | | Plus |
BS10235.5prime Sequence
849 bp (848 high quality bases) assembled on 2006-04-19
> BS10235.5prime
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACATGAAAGCTTTCTAGACC
BS10235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4342-PA | 819 | CG4342-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfrl-RJ | 6630 | CG43224-RJ | 3494..4316 | 17..839 | 4100 | 99.9 | Plus |
Gfrl-RI | 6279 | CG43224-RI | 3143..3965 | 17..839 | 4100 | 99.9 | Plus |
Gfrl-RH | 7235 | CG43224-RH | 4099..4921 | 17..839 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20381310..20381576 | 839..573 | 1320 | 99.6 | Minus |
3R | 32079331 | 3R | 20383108..20383333 | 338..113 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 20382168..20382298 | 463..333 | 655 | 100 | Minus |
3R | 32079331 | 3R | 20381961..20382076 | 575..460 | 580 | 100 | Minus |
3R | 32079331 | 3R | 20383804..20383868 | 112..48 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:09:10 has no hits.
BS10235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:42 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:22 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:57 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4092..4921 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:04 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4092..4921 | 9..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:04 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20383111..20383333 | 113..335 | 100 | <- | Minus |
3R | 20383804..20383868 | 48..112 | 100 | <- | Minus |
3R | 20382168..20382295 | 336..463 | 100 | <- | Minus |
3R | 20381310..20381574 | 575..839 | 99 | <- | Minus |
3R | 20381962..20382072 | 464..574 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:57 Download gff for
BS10235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16207684..16207794 | 464..574 | 100 | <- | Minus |
arm_3R | 16207890..16208017 | 336..463 | 100 | <- | Minus |
arm_3R | 16207032..16207296 | 575..839 | 99 | <- | Minus |
arm_3R | 16208833..16209055 | 113..335 | 100 | <- | Minus |
arm_3R | 16209526..16209590 | 48..112 | 100 | <- | Minus |
BS10235.complete Sequence
851 bp (851 high quality bases) assembled on 2006-03-25
> BS10235.complete
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACATGAAAGCTTTCTAGACCA
T
BS10235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfrl-RL | 3654 | CG43224-PL | 2821..3643 | 17..839 | 4100 | 99.9 | Plus |
Gfrl-RJ | 3639 | CG43224-PJ | 2821..3639 | 17..835 | 4095 | 100 | Plus |
Gfrl-RI | 3507 | CG43224-PI | 2689..3507 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfrl-RJ | 6630 | CG43224-RJ | 3494..4316 | 17..839 | 4100 | 99.9 | Plus |
Gfrl-RI | 6279 | CG43224-RI | 3143..3965 | 17..839 | 4100 | 99.9 | Plus |
Gfrl-RH | 7235 | CG43224-RH | 4099..4921 | 17..839 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20381310..20381576 | 839..573 | 1320 | 99.6 | Minus |
3R | 32079331 | 3R | 20383108..20383333 | 338..113 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 20382168..20382298 | 463..333 | 655 | 100 | Minus |
3R | 32079331 | 3R | 20381961..20382076 | 575..460 | 580 | 100 | Minus |
3R | 32079331 | 3R | 20383804..20383868 | 112..48 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:16:32 has no hits.
BS10235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:22 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-RA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:50 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mun-RB | 1524..2353 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:17:18 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4099..4916 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:22 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4342-RA | 108..937 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:39 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfrl-RH | 4099..4916 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:39 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20383111..20383333 | 113..335 | 100 | <- | Minus |
3R | 20383804..20383868 | 48..112 | 100 | <- | Minus |
3R | 20385652..20385682 | 17..47 | 100 | | Minus |
3R | 20381315..20381574 | 575..834 | 100 | <- | Minus |
3R | 20382168..20382295 | 336..463 | 100 | <- | Minus |
3R | 20381962..20382072 | 464..574 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:17:18 Download gff for
BS10235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16207037..16207296 | 575..834 | 100 | <- | Minus |
arm_3R | 16207684..16207794 | 464..574 | 100 | <- | Minus |
arm_3R | 16207890..16208017 | 336..463 | 100 | <- | Minus |
arm_3R | 16208833..16209055 | 113..335 | 100 | <- | Minus |
arm_3R | 16209526..16209590 | 48..112 | 100 | <- | Minus |
arm_3R | 16211374..16211404 | 17..47 | 100 | | Minus |
BS10235.pep Sequence
Translation from 16 to 834
> BS10235.pep
MATTTTTQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGES
LILTCHALCVPFAPCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPL
GEYILPGGIFLLLGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQT
QCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQI
NSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLY
AAMLALAYLSSWTTLRMSDVAT*
BS10235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfrl-PF | 864 | CG43224-PF | 593..864 | 1..272 | 1426 | 100 | Plus |
Gfrl-PM | 1042 | CG43224-PM | 771..1042 | 1..272 | 1426 | 100 | Plus |
Gfrl-PH | 1101 | CG43224-PH | 830..1101 | 1..272 | 1426 | 100 | Plus |
Gfrl-PI | 1168 | CG43224-PI | 897..1168 | 1..272 | 1426 | 100 | Plus |
Gfrl-PJ | 1212 | CG43224-PJ | 941..1212 | 1..272 | 1426 | 100 | Plus |