Clone Sequence Records
BS10236.3prime Sequence
991 bp (739 high quality bases) assembled on 2006-04-19
> BS10236.3prime
ATGGTCTAGAAAGCTTTCATAAGAAGCCCATGTCGAGGGCAGTGTAGAGG
GCGCGAATGTCGCTGTGGGCGGAGATGCGCCAGAAGGGGAAGTTCATGGC
CTTGGCGGCGGTCTCCTCCTCGTTCCCATCCCCAATCACCACGTAGGTGC
TCTTGCGCCCAAAGCGAGTCACGATCCGCTCATAGCAGGTTTCATGGCCG
ATTTTGTGCGCACTGTAAATGTTCTCGATGTTGAAGATGCCGCCCAATCC
GAACAGCAGGACCTTGGCCAGCGCCGGGGCCAGTTGCGTGGAGGTTACCA
GCACGTTGACGCAGTTCTCCCGCTGGGAGATCATGCTCAGGCACTTGAGC
GCCAGCGTGGCCCAGTTGTCGGTCGCCACCTCGATTTCCGAGCGTATCTG
TAGCCAGGCCTCACGTTTTCCGGGTCCCAGAAGGGTGCCAACATTTCCAC
GATAGCTATTGTAGATGTCCTTGATCTTGCGGTAGCGGAAGGCCAGCTTG
CGCATCCAATCGACGCCGCCCCTCACACCGGTGGGCAGGCAGAGATTGGG
CGGGGCGCCTGGTGGAGTGTTCGTGTGGAAGCCATCCGTGGCGAAGTTGT
AGGCGCTCAGGTCCTGGCCATTGTCGTCCGAGCTGACATCGTCGATGTGC
ACCTGGTCGCACTCCTCGATCTCGTTGAAGAAGAAATGCGTGTCGGCCAT
GTTGAAGACCATCTCCTCCATGCGGAAGGCGATGGTCATCAGGGAGCTGT
GGTCTTTGGTGTATCGGTTGGCATAGCTGCCCGACAGCAGCGTGTGGAAG
ATGATGAGCGTCTCGTCCAGATCCCAGACGAACACCCGCTCCGGTGGCTT
CACCGCCTCACTGTTCCCGGTGTCCGAGGCAGTGCTTCTGGTGGGGCTGG
GCTGCTGATGGCGTCTACCACGCGCCCGACCCGTCTTACCCGTGGGCGTG
GTCTTGCTCGTTGCCACGCCCCCCGAACCGGGGGGTACCCC
BS10236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9554-PA | 2301 | eya-RA | 1345..2301 | 973..17 | 4785 | 100 | Minus |
| CG9554-PB | 2283 | eya-RB | 1327..2283 | 973..17 | 4785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RC | 2832 | CG9554-RC | 1297..2272 | 990..14 | 4815 | 99.6 | Minus |
| eya-RB | 3320 | CG9554-RB | 1785..2760 | 990..14 | 4815 | 99.6 | Minus |
| eya-RA | 3075 | CG9554-RA | 1540..2515 | 990..14 | 4815 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6528575..6529112 | 444..981 | 2660 | 99.6 | Plus |
| 2L | 23513712 | 2L | 6528267..6528512 | 198..443 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 6528007..6528192 | 14..199 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:32 has no hits.
BS10236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:43 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9554-PB | 1309..2283 | 17..991 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:24 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9554-PB | 1309..2283 | 17..991 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:32 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RA | 1538..2515 | 14..991 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:07 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RA | 1538..2515 | 14..991 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:07 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6528007..6528191 | 14..198 | 100 | <- | Plus |
| 2L | 6528268..6528512 | 199..443 | 100 | <- | Plus |
| 2L | 6528575..6529120 | 444..991 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:32 Download gff for
BS10236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6528268..6528512 | 199..443 | 100 | <- | Plus |
| arm_2L | 6528007..6528191 | 14..198 | 100 | <- | Plus |
| arm_2L | 6528575..6529120 | 444..991 | 99 | | Plus |
BS10236.5prime Sequence
893 bp (831 high quality bases) assembled on 2006-04-19
> BS10236.5prime
GAAGTTATCAGTCGACATGTTGTATAATGTGCCGTGCTATCAAAACTTCT
CAACGCTGGATTACTACAAAGTTAAACGTCCCAAGACAGACCACACGGAT
ACACATGAACGCAACCGCCTCTGCAATCTGTCACAGCAGCAGCAGCAACA
GCAACCCCAGCAGCAACAGACGCATCAGCAGCAACAACAGCAGCAGCAGC
AATCCCATCAGCAATCCCATTCCAGCACCGTGTTGGCCAGCAATGGACCC
AGTAGCGCCGGTGCCGGCATGGGTGTCGGTGTGGGCGGAGGCGGTGGCAG
TGGAGGAGGAGTAGGAGGCGGAGTTGGCCAGTGCAGTCCGCTGGGACTGC
CGCCGCAGAGCCAGCCGCTCCAGCCGACAATAGGATCGCTGGCCTCGCTG
AGCGGTCACTACTCGAACGGTAATGCCAATCCGAATGTGAACTCGAGCAG
CTGCAGTCTGGCCACAGCATCCAGTTTTGCGCAGTCCGCCGGCAGCAGTT
TCTCCACATATCAACAGGCTGGTGGCACCAGCGGTGGAGTTTCTGGCGAG
GATGGCGTGGTGGGCGGAGCAACTGTGATGTCGCACTGGACGCACGATGG
CACTGGCTCGAGTGCAGCGGTCAAGTCGGAGTCCCGCAGCCCGGGCCAAG
TGCACGCATCGCTGGACAACGGCTCGGTGGCCGGATCCAATTTGTACGGC
TGCAGCTCGGCCAGCAATCCGCTGGACGGAGGAGCAGTGGCGGTCAACTC
TTCGGCAGTGGCAGCGGCAGCAGCAGCGGTCTACGACGGCAAACATGACT
ACTACTACTACAACAGCATGCAGCAGTACACGCCGCCGCCCTTCTACTCC
GGATACGGAACTCCTTATGCGGCGGCAACGGCGGCACGGCAGG
BS10236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9554-PB | 2283 | eya-RB | 1..877 | 17..893 | 4385 | 100 | Plus |
| CG9554-PA | 2301 | eya-RA | 73..895 | 71..893 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RB | 3320 | CG9554-RB | 475..1351 | 17..893 | 4385 | 100 | Plus |
| eya-RA | 3075 | CG9554-RA | 284..1106 | 71..893 | 4115 | 100 | Plus |
| eya-RC | 2832 | CG9554-RC | 87..863 | 117..893 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6529554..6530330 | 893..117 | 3885 | 100 | Minus |
| 2L | 23513712 | 2L | 6546447..6546502 | 72..17 | 280 | 100 | Minus |
| 2L | 23513712 | 2L | 6532906..6532952 | 117..71 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:55 has no hits.
BS10236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:44 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9554-PB | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:25 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9554-PB | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:21 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1351 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:36 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1351 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:36 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6529554..6530329 | 118..893 | 100 | <- | Minus |
| 2L | 6532906..6532952 | 71..117 | 100 | <- | Minus |
| 2L | 6546449..6546502 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:21 Download gff for
BS10236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6529554..6530329 | 118..893 | 100 | <- | Minus |
| arm_2L | 6532906..6532952 | 71..117 | 100 | <- | Minus |
| arm_2L | 6546449..6546502 | 17..70 | 100 | | Minus |
BS10236.complete Sequence
2315 bp assembled on 2007-11-30
GenBank Submission: FJ636611
> BS10236.complete
GAAGTTATCAGTCGACATGTTGTATAATGTGCCGTGCTATCAAAACTTCT
CAACGCTGGATTACTACAAAGTTAAACGTCCCAAGACAGACCACACGGAT
ACACATGAACGCAACCGCCTCTGCAATCTGTCACAGCAGCAGCAGCAACA
GCAACCCCAGCAGCAACAGACGCATCAGCAGCAACAACAGCAGCAGCAGC
AATCCCATCAGCAATCCCATTCCAGCACCGTGTTGGCCAGCAATGGACCC
AGTAGCGCCGGTGCCGGCATGGGTGTCGGTGTGGGCGGAGGCGGTGGCAG
TGGAGGAGGAGTAGGAGGCGGAGTTGGCCAGTGCAGTCCGCTGGGACTGC
CGCCGCAGAGCCAGCCGCTCCAGCCGACAATAGGATCGCTGGCCTCGCTG
AGCGGTCACTACTCGAACGGTAATGCCAATCCGAATGTGAACTCGAGCAG
CTGCAGTCTGGCCACAGCATCCAGTTTTGCGCAGTCCGCCGGCAGCAGTT
TCTCCACATATCAACAGGCTGGTGGCACCAGCGGTGGAGTTTCTGGCGAG
GATGGCGTGGTGGGCGGAGCAACTGTGATGTCGCACTGGACGCACGATGG
CACTGGCTCGAGTGCAGCGGTCAAGTCGGAGTCCCGCAGCCCGGGCCAAG
TGCACGCATCGCTGGACAACGGCTCGGTGGCCGGATCCAATTTGTACGGC
TGCAGCTCGGCCAGCAATCCGCTGGACGGAGGAGCAGTGGCGGTCAACTC
TTCGGCAGTGGCAGCGGCAGCAGCAGCGGTCTACGACGGCAAACATGACT
ACTACTACTACAACAGCATGCAGCAGTACACGCCGCCGCCCTTCTACTCC
GGATACGGAACTCCTTATGCGGCGGCAACGGCGGCACGGCAGGCCAAGAT
GGAACCCGGAGCGGCAGCTGCGGCGGCTGCCTACTTGACGCCCAGCTATG
CCGCCAGCGGCAACAACAACTCGCAGCTGTACAGCAGTCCGTACGCCGGC
TACAACAACTTCGGGCAGCAGGACTACGGCGGCTACTACAACGAGCAGTA
CGGCAACTATTACAGTCCGGCCAACTACTCACCGTATGCGGTCAGCTCGC
CCAGCTCGAGTGCGAGTCATGGACATGGCTTCCATGTGGCGGCCTCCTCG
AATCTCTCCGAGAGTCCCACGGACACCCACTCGACGACGCCGGTGCACCA
GACCACCCACTCGCCGCACTCCCCGCTCCCGATCTCGCCGAGCACTGGCT
CCGGCATTGGCCCGCTGGGCAATGTGTCCGCGGCAGCTGCGGCCGCTGCT
CTCAACTCGAGCGGAGGCAGCAGTGTGGGTACCGCCGGCTCTGGGGGCGT
GGCAACGAGCAAGACCACGCCCACGGGTAAGACGGGTCGGGCGCGTGGTA
GACGCCATCAGCAGCCCAGCCCCACCAGAAGCACTGCCTCGGACACCGGG
AACAGTGAGGCGGTGAAGCCACCGGAGCGGGTGTTCGTCTGGGATCTGGA
CGAGACGCTCATCATCTTCCACACGCTGCTGTCGGGCAGCTATGCCAACC
GATACACCAAAGACCACAGCTCCCTGATGACCATCGCCTTCCGCATGGAG
GAGATGGTCTTCAACATGGCCGACACGCATTTCTTCTTCAACGAGATCGA
GGAGTGCGACCAGGTGCACATCGACGATGTCAGCTCGGACGACAATGGCC
AGGACCTGAGCGCCTACAACTTCGCCACGGATGGCTTCCACACGAACACT
CCACCAGGCGCCCCGCCCAATCTCTGCCTGCCCACCGGTGTGAGGGGCGG
CGTCGATTGGATGCGCAAGCTGGCCTTCCGCTACCGCAAGATCAAGGACA
TCTACAATAGCTATCGTGGAAATGTTGGCACCCTTCTGGGACCCGGAAAA
CGTGAGGCCTGGCTACAGATACGCTCGGAAATCGAGGTGGCGACCGACAA
CTGGGCCACGCTGGCGCTCAAGTGCCTGAGCATGATCTCCCAGCGGGAGA
ACTGCGTCAACGTGCTGGTAACCTCCACGCAACTGGCCCCGGCGCTGGCC
AAGGTCCTGCTGTTCGGATTGGGCGGCATCTTCAACATCGAGAACATTTA
CAGTGCGCACAAAATCGGCCATGAAACCTGCTATGAGCGGATCGTGACTC
GCTTTGGGCGCAAGAGCACCTACGTGGTGATTGGGGATGGGAACGAGGAG
GAGACCGCCGCCAAGGCCATGAACTTCCCCTTCTGGCGCATCTCCGCCCA
CAGCGACATTCGCGCCCTCTACACTGCCCTCGACATGGGCTTCTTATGAA
AGCTTTCTAGACCAT
BS10236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RB | 2283 | CG9554-PB | 1..2283 | 17..2299 | 11415 | 100 | Plus |
| eya-RA | 2301 | CG9554-PA | 73..2301 | 71..2299 | 11145 | 100 | Plus |
| eya-RC | 2031 | CG9554-PC | 1..2031 | 269..2299 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RB | 3320 | CG9554-RB | 475..2760 | 17..2302 | 11430 | 100 | Plus |
| eya-RA | 3075 | CG9554-RA | 284..2515 | 71..2302 | 11160 | 100 | Plus |
| eya-RC | 2832 | CG9554-RC | 87..2272 | 117..2302 | 10930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6528575..6530330 | 1872..117 | 8780 | 100 | Minus |
| 2L | 23513712 | 2L | 6528267..6528512 | 2118..1873 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 6528007..6528192 | 2302..2117 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 6546447..6546502 | 72..17 | 280 | 100 | Minus |
| 2L | 23513712 | 2L | 6532906..6532952 | 117..71 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:09:50 has no hits.
BS10236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:32 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 1..2283 | 17..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:52 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 476..2752 | 22..2298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:29 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 480..2756 | 22..2298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:08 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 476..2752 | 22..2298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:15 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 480..2756 | 22..2298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:15 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6528011..6528191 | 2118..2298 | 100 | <- | Minus |
| 2L | 6528268..6528512 | 1873..2117 | 100 | <- | Minus |
| 2L | 6528575..6530329 | 118..1872 | 100 | <- | Minus |
| 2L | 6532906..6532952 | 71..117 | 100 | <- | Minus |
| 2L | 6546449..6546497 | 22..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:29 Download gff for
BS10236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6528011..6528191 | 2118..2298 | 100 | <- | Minus |
| arm_2L | 6528268..6528512 | 1873..2117 | 100 | <- | Minus |
| arm_2L | 6528575..6530329 | 118..1872 | 100 | <- | Minus |
| arm_2L | 6532906..6532952 | 71..117 | 100 | <- | Minus |
| arm_2L | 6546449..6546497 | 22..70 | 100 | | Minus |
BS10236.pep Sequence
Translation from 16 to 2298
> BS10236.pep
MLYNVPCYQNFSTLDYYKVKRPKTDHTDTHERNRLCNLSQQQQQQQPQQQ
QTHQQQQQQQQQSHQQSHSSTVLASNGPSSAGAGMGVGVGGGGGSGGGVG
GGVGQCSPLGLPPQSQPLQPTIGSLASLSGHYSNGNANPNVNSSSCSLAT
ASSFAQSAGSSFSTYQQAGGTSGGVSGEDGVVGGATVMSHWTHDGTGSSA
AVKSESRSPGQVHASLDNGSVAGSNLYGCSSASNPLDGGAVAVNSSAVAA
AAAAVYDGKHDYYYYNSMQQYTPPPFYSGYGTPYAAATAARQAKMEPGAA
AAAAAYLTPSYAASGNNNSQLYSSPYAGYNNFGQQDYGGYYNEQYGNYYS
PANYSPYAVSSPSSSASHGHGFHVAASSNLSESPTDTHSTTPVHQTTHSP
HSPLPISPSTGSGIGPLGNVSAAAAAAALNSSGGSSVGTAGSGGVATSKT
TPTGKTGRARGRRHQQPSPTRSTASDTGNSEAVKPPERVFVWDLDETLII
FHTLLSGSYANRYTKDHSSLMTIAFRMEEMVFNMADTHFFFNEIEECDQV
HIDDVSSDDNGQDLSAYNFATDGFHTNTPPGAPPNLCLPTGVRGGVDWMR
KLAFRYRKIKDIYNSYRGNVGTLLGPGKREAWLQIRSEIEVATDNWATLA
LKCLSMISQRENCVNVLVTSTQLAPALAKVLLFGLGGIFNIENIYSAHKI
GHETCYERIVTRFGRKSTYVVIGDGNEEETAAKAMNFPFWRISAHSDIRA
LYTALDMGFL*
BS10236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-PB | 760 | CG9554-PB | 1..760 | 1..760 | 4013 | 100 | Plus |
| eya-PA | 766 | CG9554-PA | 24..766 | 18..760 | 3914 | 100 | Plus |
| eya-PC | 676 | CG9554-PC | 1..676 | 85..760 | 3562 | 100 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 541..921 | 107..478 | 181 | 26.8 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 542..922 | 107..478 | 181 | 26.8 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 427..840 | 78..477 | 174 | 24.9 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 478..874 | 111..482 | 162 | 24.3 | Plus |
