Clone Sequence Records
BS10238.complete Sequence
2252 bp assembled on 2009-12-07
GenBank Submission: KX806351
> BS10238.complete
GAAGTTATCAGTCGACATGACGCCATGTTTATTTTCAGACGATTTATCGC
TGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTACACGAC
ATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCTAAGTGA
ATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCTCGTCAA
ACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGTTTGAAA
CAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAATGACAA
TAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTGAGCCTA
ATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGATGTTCT
AACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTTTGATCC
ATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCAACAGCA
CGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACTTCCCAA
GACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAACTTTAAC
CAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAGTTCCAA
AAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACATGATTAC
AAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTTAAAGAA
AAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGAAAAAAA
ATGCAACTTTTATACAATCATTGAAAGAAAGCACTCCATCACATACAATG
GATGATAAGATCTACAAAAAATATCAACGTATGATTAAGAACCGAGAGTC
TGCTTCCTTATCACGCAAAAAAAGAAAGGAGTATGTTGTTTCATTAGAGA
CTCGAATAAATAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGAAAAT
ATAACATTACGGGATCAGATATTTCTGCTTGCCACCTCTTGTCAGCGTGA
ATCTGGAAATGCAAATGGTCTTTTACATAACTATTCAGGATCTGAACGAA
GCGAAAATAAAAACGGAAGATTTACATCAAAGGCAAAGCATTGCAATAAA
AATAATACCACAGCAACCATTAAAAAAAATGTAGCTATATTATTTGCTAT
GGCTTTTGTGGTATCTCTAAACGCTGGAAATTTTCAAAAGTATCTCAACA
TACCAAATAACTTGGAAGGTAAAAGTGAGATTGAGCCTGTCGGAAAACAA
TTAAGCATGTCCAATCGACGGTTACTATGGGCTGATTCAGAGGAGGAATA
TAAAGAAAAAAACAATCTAAGTACATTTCTTTCAGGCAAACAGAAAGAAC
CGTCTCTATATTTCTTAAATTCTGGTATACGCAACCACAAAATCAATTCT
TTTGAAAACATTACCAAAAATGTATCTCATACTTACTCATATAATGAACC
TCCACCCTTAACATATTTAAGTACACGAAACTGTATAAACAGGTGCAGGT
CCCATAATGGTTCTTCCAATCAATCAAAATACTTTATGCTCGCTCAAAAT
TTGCATAAATGGATTAGCGGCACTTTAAACGTGTCTAATTTTTCAAAGGA
AAAAGAGGATTCAAATGGTTTTGAATTTTTTAATAATTATTTTGAGGAAA
AACGTGACATACACATCAAACACGAAAAGCGAAAAATGTTTATTGATTTA
AATGATTACACATCTGTTTTGCCAGAAAAACAGCAAAAACTAAACAATAC
GAAATCTTTTGAAAATATGCGCGAACAAATAAATGTAATTAGTAAAATTG
AGAGAAGGGATGATACTTTTTACGTATTTTCATTTAATATGGATCATGCA
CTACTTCCAGCATTAAGTTACAACAGTAGTTATCGCCCAAAATTGTCGTT
GGTACTTCCCTTAGAAAATCCGGGAATTAACGGTAAAATGAAAATGATCC
AAGTAGACTGTGAAGTATTTAATACAAAAGACTTTGAAGTTAGTCATCAT
TTGTTTCCAGCTAAACTTCGTCAAAACGTAATTCCACGGAAGCCCAACAA
GTTAAATATAAAAAAAAGTAGTACTGAAACGCCAGTTAGCAAAACCCAAA
GAGTGCGTAATTTTTACAAGGTGGGCTCTAGAAATCAAGCTACCGTCGCA
TCTAGTTTTAATAAGGAAACAAAGTTTATCAACTAAAAGCTTTCTAGACC
AT
BS10238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 2220 | CG3136-PB | 1..2220 | 17..2236 | 11100 | 100 | Plus |
| Atf6-RA | 2220 | CG3136-PA | 1..2220 | 17..2236 | 11100 | 100 | Plus |
| Atf6-RC | 2226 | CG3136-PC | 29..2226 | 39..2236 | 10990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 1014..3233 | 17..2236 | 11100 | 100 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 131..2350 | 17..2236 | 11100 | 100 | Plus |
| Atf6-RC | 2488 | CG3136-RC | 127..2324 | 39..2236 | 10990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5152789..5154030 | 995..2236 | 6210 | 100 | Plus |
| 2R | 25286936 | 2R | 5148179..5149157 | 17..995 | 4895 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 1798..1724 | 140 | 68.4 | Minus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 1798..1724 | 140 | 68.4 | Minus |
BS10238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:03 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1014..3231 | 17..2234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:01 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 131..2348 | 17..2234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:43 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1014..3231 | 17..2234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:32 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 131..2348 | 17..2234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:32 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5148179..5149156 | 17..994 | 100 | -> | Plus |
| 2R | 5152789..5154028 | 995..2234 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:01 Download gff for
BS10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1035684..1036661 | 17..994 | 100 | -> | Plus |
| arm_2R | 1040294..1041533 | 995..2234 | 100 | | Plus |
BS10238.3prime Sequence
937 bp (828 high quality bases) assembled on 2006-04-19
> BS10238.3prime
ATGGTCTAGAAAGCTTTTAGTTGATAAACTTTGTTTCCTTATTAAAACTA
GATGCGACGGTAGCTTGATTTCTAGAGCCCACCTTGTAAAAATTACGCAC
TCTTTGGGTTTTGCTAACTGGCGTTTCAGTACTACTTTTTTTTATATTTA
ACTTGTTGGGCTTCCGTGGAATTACGTTTTGACGAAGTTTAGCTGGAAAC
AAATGATGACTAACTTCAAAGTCTTTTGTATTAAATACTTCACAGTCTAC
TTGGATCATTTTCATTTTACCGTTAATTCCCGGATTTTCTAAGGGAAGTA
CCAACGACAATTTTGGGCGATAACTACTGTTGTAACTTAATGCTGGAAGT
AGTGCATGATCCATATTAAATGAAAATACGTAAAAAGTATCATCCCTTCT
CTCAATTTTACTAATTACATTTATTTGTTCGCGCATATTTTCAAAAGATT
TCGTATTGTTTAGTTTTTGCTGTTTTTCTGGCAAAACAGATGTGTAATCA
TTTAAATCAATAAACATTTTTCGCTTTTCGTGTTTGATGTGTATGTCACG
TTTTTCCTCAAAATAATTATTAAAAAATTCAAAACCATTTGAATCCTCTT
TTTCCTTTGAAAAATTAGACACGTTTAAAGTGCCGCTAATCCATTTATGC
AAATTTTGAGCGAGCATAAAGTATTTTGATTGATTGGAAGAACCATTATG
GGACCTGCACCTGTTTATACAGTTTCGTGTACTTAAATATGTTAAGGGTG
GAGGTTCATTATATGAGTAAGTATGAGATACATTTTTGGTAATGTTTTCA
AAAGAATTGATTTTGTGGTTGCGTATACCAGAATTTAAGAAATATAGAGA
CGGTTCTTTCTGTTTGCCTGAAAGAAATGTACTTAGATTGTTTTTTTCTT
TATATTCCTCCTCTGAATCAGCCCATAGTAACCGTCG
BS10238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PC | 2226 | CG3136-RC | 1306..2226 | 937..17 | 4605 | 100 | Minus |
| CG3136-PA | 2220 | CG3136-RA | 1300..2220 | 937..17 | 4605 | 100 | Minus |
| CG3136-PB | 2220 | CG3136-RB | 1300..2220 | 937..17 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 2313..3233 | 937..17 | 4605 | 100 | Minus |
| Atf6-RA | 3076 | CG3136-RA | 1430..2350 | 937..17 | 4605 | 100 | Minus |
| Atf6-RC | 2488 | CG3136-RC | 1404..2324 | 937..17 | 4605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5153110..5154030 | 937..17 | 4605 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 455..529 | 140 | 68.4 | Plus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 455..529 | 140 | 68.4 | Plus |
BS10238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:45 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1300..2220 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:27 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1300..2220 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:32 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1404..2329 | 9..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:53 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1404..2329 | 9..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:53 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5153110..5154035 | 9..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:32 Download gff for
BS10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1040615..1041540 | 9..937 | 99 | | Minus |
BS10238.5prime Sequence
946 bp (790 high quality bases) assembled on 2006-04-19
> BS10238.5prime
GAAGTTATCAGTCGACATGACGCCATGTTTATTTTCAGACGATTTATCGC
TGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTACACGAC
ATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCTAAGTGA
ATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCTCGTCAA
ACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGTTTGAAA
CAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAATGACAA
TAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTGAGCCTA
ATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGATGTTCT
AACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTTTGATCC
ATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCAACAGCA
CGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACTTCCCAA
GACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAACTTTAAC
CAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAGTTCCAA
AAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACATGATTAC
AAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTTAAAGAA
AAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGAAAAAAA
TGCAACTTTTATACAATCATTGAAAGAAAGCACTCCATCACATACAATGG
ATGATAAGATCTACAAAAAATATCAACGTATGATTAAGAACCGAGAGTCT
GCTTTCTTATCACGCAAAAAAAGAAAGGAGTATGTTGTTTCATTAG
BS10238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PA | 2220 | CG3136-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
| CG3136-PB | 2220 | CG3136-RB | 1..784 | 17..800 | 3920 | 100 | Plus |
| CG3136-PC | 2226 | CG3136-RC | 29..790 | 39..800 | 3810 | 100 | Plus |
| CG3136-PA | 2220 | CG3136-RA | 779..931 | 794..946 | 740 | 99.3 | Plus |
| CG3136-PB | 2220 | CG3136-RB | 779..931 | 794..946 | 740 | 99.3 | Plus |
| CG3136-PC | 2226 | CG3136-RC | 785..937 | 794..946 | 740 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 1014..1944 | 17..946 | 4615 | 99.8 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 131..1061 | 17..946 | 4615 | 99.8 | Plus |
| Atf6-RC | 2488 | CG3136-RC | 127..1035 | 39..946 | 4505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5148179..5149109 | 17..946 | 4590 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:12:33 has no hits.
BS10238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:47 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:28 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:27:23 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1061 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:36 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1061 | 9..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:36 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5148169..5149109 | 5..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:27:23 Download gff for
BS10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1035674..1036614 | 5..946 | 99 | | Plus |
BS10238.pep Sequence
Translation from 16 to 2235
> BS10238.pep
MTPCLFSDDLSLLGEVTENNYDNNIVHDILNSSAFYNDTSLDLSELIPDL
QKEAFGLHFSSNPITSEFSLSSPISGLKQIPSACSGEFKRNVNDNNFQLD
LTNSRNDLPEPNSSPTRSLNRSNVNGCSNEEAVYPLLVDSDKFDPFFEPA
KVRSPNKEFNSTISNLSDIKNELPETSQDLGFNSYNTSRNNSTLTKSWPI
NTELNLDNQVPKTVLPLSRTIYLPSHDYKGLLPTVKCNGDRTLKKNVNVR
SKISNIVIKKKNATFIQSLKESTPSHTMDDKIYKKYQRMIKNRESASLSR
KKRKEYVVSLETRINKLEKECDSLKAENITLRDQIFLLATSCQRESGNAN
GLLHNYSGSERSENKNGRFTSKAKHCNKNNTTATIKKNVAILFAMAFVVS
LNAGNFQKYLNIPNNLEGKSEIEPVGKQLSMSNRRLLWADSEEEYKEKNN
LSTFLSGKQKEPSLYFLNSGIRNHKINSFENITKNVSHTYSYNEPPPLTY
LSTRNCINRCRSHNGSSNQSKYFMLAQNLHKWISGTLNVSNFSKEKEDSN
GFEFFNNYFEEKRDIHIKHEKRKMFIDLNDYTSVLPEKQQKLNNTKSFEN
MREQINVISKIERRDDTFYVFSFNMDHALLPALSYNSSYRPKLSLVLPLE
NPGINGKMKMIQVDCEVFNTKDFEVSHHLFPAKLRQNVIPRKPNKLNIKK
SSTETPVSKTQRVRNFYKVGSRNQATVASSFNKETKFIN*
BS10238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-PB | 739 | CG3136-PB | 1..739 | 1..739 | 3843 | 100 | Plus |
| Atf6-PA | 739 | CG3136-PA | 1..739 | 1..739 | 3843 | 100 | Plus |
| Atf6-PC | 741 | CG3136-PC | 10..741 | 8..739 | 3798 | 99.9 | Plus |
