Clone Sequence Records
BS10239.3prime Sequence
879 bp (812 high quality bases) assembled on 2006-04-19
> BS10239.3prime
ATGGTCTAGAAAGCTTTTAGAGACTAACCTGCTGCATCTTATCAAAATCT
AAACACGGCCGATGCGGTCGCTGCAGTCTCTGGGTGGCGACGGCGGTGAC
GTTAGCGGCATTTCCGGCGGAATTGGCAGCATTGTGTGTCGTTGTTGTGC
CTGATGATGATGATGCTGACGATGGTGATATTGTTGTGGCGCCCCCGGCT
GCACCACTGGCATTGTTACTGGGTCGCCGCCTGGGCGATATGGCGCAGTG
GAACAGTTTCGCCGGCGGACTGACCGAACGCACCTCCATATCCAGGCCAG
TGGTGCTGGCCGGACTGCTCCGCGAGCTGTTGTAGTGGAAACTATATTTC
GGCTGCGGCTGGTAAATGTGGTGGCTGCTGTTGCTCATCTTTAGCGAGCT
GCTGCACGCCTTGATCACACTCGGCTCATTCTCGTTGCCGCCGTTTCCGT
TTCCGGTTGCGGCCACAGTTCCGCTGGCATTCCCTGCCAGTGCGCCAATC
TTGGCGCACTTACTGCTATTGGCCGCGCCACCGCCACCGCCGTTGTCACC
ATTCTCCTCGTTTACACTATTATCACATAATTTAATATTTTCGATGCCAC
ATCGGGCCTCCGATAATATCAGTGGCGTTGTGGAGCGGAACATCATATGG
CTACGATTTGGCTTGAATGCCTCCAATGGCGGCGATGTGCGAAAATTCAC
GGGCGTCAATATCGGCTCCAGCGAGTTGCGCAACTCATCGTCGGAGCTGT
GGGCCAGCGATCGCTTGCGGTTCTCCACCATCAGCGTGGAGCTAGAACGC
TTCGAGTTGGAGGTGGTGGCCCGCTCCTCGTAGGGCGCCTCCGTGTCCAG
CGAGGAGGTGCATCCGCGATTCGAGATCC
BS10239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3920-PA | 1056 | l(2)k16918-RA | 194..1056 | 879..17 | 4315 | 100 | Minus |
CG3920-PB | 1206 | l(2)k16918-RB | 344..1206 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reph-RB | 2928 | CG3920-RB | 1412..2274 | 879..17 | 4315 | 100 | Minus |
Reph-RA | 3750 | CG3920-RA | 458..1320 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3807523..3808241 | 735..17 | 3595 | 100 | Minus |
2L | 23513712 | 2L | 3807316..3807461 | 879..734 | 730 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1056..1158 | 238..137 | 152 | 62.1 | Minus |
BS10239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:48 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3920-PA | 194..1056 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:29 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3920-PB | 344..1206 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:35 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RA | 458..1323 | 13..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:07 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RA | 458..1323 | 13..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:07 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3807316..3807461 | 734..879 | 100 | -> | Minus |
2L | 3807525..3808244 | 13..733 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:35 Download gff for
BS10239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3807316..3807461 | 734..879 | 100 | -> | Minus |
arm_2L | 3807525..3808244 | 13..733 | 99 | | Minus |
BS10239.5prime Sequence
884 bp (789 high quality bases) assembled on 2006-04-19
> BS10239.5prime
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCG
GCAACGAGAATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAG
ATGAGCAACAGCAGCCACCACATTTACCAGCCGC
BS10239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3920-PB | 1206 | l(2)k16918-RB | 1..868 | 17..884 | 4340 | 100 | Plus |
CG3920-PA | 1056 | l(2)k16918-RA | 1..718 | 167..884 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reph-RB | 2928 | CG3920-RB | 1068..1936 | 16..884 | 4345 | 100 | Plus |
Reph-RA | 3750 | CG3920-RA | 187..982 | 89..884 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3807523..3807903 | 504..884 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 3807133..3807461 | 177..505 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 3806967..3807058 | 87..178 | 460 | 100 | Plus |
2L | 23513712 | 2L | 3806749..3806821 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:26:28 has no hits.
BS10239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:49 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3920-PB | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:31 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3920-PB | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:17 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RB | 1068..1936 | 16..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:11 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RB | 1068..1936 | 16..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:11 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3807133..3807461 | 177..505 | 100 | -> | Plus |
2L | 3807525..3807903 | 506..884 | 100 | | Plus |
2L | 3806749..3806821 | 16..88 | 100 | -> | Plus |
2L | 3806969..3807056 | 89..176 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:17 Download gff for
BS10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3806749..3806821 | 16..88 | 100 | -> | Plus |
arm_2L | 3806969..3807056 | 89..176 | 100 | -> | Plus |
arm_2L | 3807133..3807461 | 177..505 | 100 | -> | Plus |
arm_2L | 3807525..3807903 | 506..884 | 100 | | Plus |
BS10239.complete Sequence
1238 bp (1238 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638831
> BS10239.complete
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCG
GCAACGAGAATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAG
ATGAGCAACAGCAGCCACCACATTTACCAGCCGCAGCCGAAATATAGTTT
CCACTACAACAGCTCGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATA
TGGAGGTGCGTTCGGTCAGTCCGCCGGCGAAACTGTTCCACTGCGCCATA
TCGCCCAGGCGGCGACCCAGTAACAATGCCAGTGGTGCAGCCGGGGGCGC
CACAACAATATCACCATCGTCAGCATCATCATCATCAGGCACAACAACGA
CACACAATGCTGCCAATTCCGCCGGAAATGCCGCTAACGTCACCGCCGTC
GCCACCCAGAGACTGCAGCGACCGCATCGGCCGTGTTTAGATTTTGATAA
GATGCAGCAGGTTAGTCTCTAAAAGCTTTCTAGACCAT
BS10239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reph-RB | 1206 | CG3920-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Reph-RA | 1056 | CG3920-PA | 1..1056 | 167..1222 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reph-RB | 2928 | CG3920-RB | 1068..2274 | 16..1222 | 6035 | 100 | Plus |
Reph-RA | 3750 | CG3920-RA | 187..1320 | 89..1222 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3807523..3808241 | 504..1222 | 3595 | 100 | Plus |
2L | 23513712 | 2L | 3807133..3807461 | 177..505 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 3806967..3807058 | 87..178 | 460 | 100 | Plus |
2L | 23513712 | 2L | 3806749..3806821 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1056..1158 | 1001..1102 | 152 | 62.1 | Plus |
BS10239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:23 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k16918-RB | 1..1206 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:52 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k16918-RB | 1051..2260 | 16..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:20 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RB | 1069..2272 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:24 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k16918-RB | 1051..2260 | 16..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:24 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reph-RB | 1069..2272 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:24 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3807133..3807461 | 177..505 | 100 | -> | Plus |
2L | 3806750..3806821 | 17..88 | 100 | -> | Plus |
2L | 3806969..3807056 | 89..176 | 100 | -> | Plus |
2L | 3807525..3808239 | 506..1220 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:20 Download gff for
BS10239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3806750..3806821 | 17..88 | 100 | -> | Plus |
arm_2L | 3806969..3807056 | 89..176 | 100 | -> | Plus |
arm_2L | 3807133..3807461 | 177..505 | 100 | -> | Plus |
arm_2L | 3807525..3808239 | 506..1220 | 100 | | Plus |
BS10239.pep Sequence
Translation from 16 to 1221
> BS10239.pep
MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD
METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG
QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE
NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP
LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS
GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS
RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP
SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS
L*
BS10239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reph-PB | 401 | CG3920-PB | 1..401 | 1..401 | 2066 | 100 | Plus |
Reph-PA | 351 | CG3920-PA | 1..351 | 51..401 | 1811 | 100 | Plus |