Clone BS10239 Report

Search the DGRC for BS10239

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptReph-RB
Protein status:BS10239.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10239.3prime Sequence

879 bp (812 high quality bases) assembled on 2006-04-19

> BS10239.3prime
ATGGTCTAGAAAGCTTTTAGAGACTAACCTGCTGCATCTTATCAAAATCT
AAACACGGCCGATGCGGTCGCTGCAGTCTCTGGGTGGCGACGGCGGTGAC
GTTAGCGGCATTTCCGGCGGAATTGGCAGCATTGTGTGTCGTTGTTGTGC
CTGATGATGATGATGCTGACGATGGTGATATTGTTGTGGCGCCCCCGGCT
GCACCACTGGCATTGTTACTGGGTCGCCGCCTGGGCGATATGGCGCAGTG
GAACAGTTTCGCCGGCGGACTGACCGAACGCACCTCCATATCCAGGCCAG
TGGTGCTGGCCGGACTGCTCCGCGAGCTGTTGTAGTGGAAACTATATTTC
GGCTGCGGCTGGTAAATGTGGTGGCTGCTGTTGCTCATCTTTAGCGAGCT
GCTGCACGCCTTGATCACACTCGGCTCATTCTCGTTGCCGCCGTTTCCGT
TTCCGGTTGCGGCCACAGTTCCGCTGGCATTCCCTGCCAGTGCGCCAATC
TTGGCGCACTTACTGCTATTGGCCGCGCCACCGCCACCGCCGTTGTCACC
ATTCTCCTCGTTTACACTATTATCACATAATTTAATATTTTCGATGCCAC
ATCGGGCCTCCGATAATATCAGTGGCGTTGTGGAGCGGAACATCATATGG
CTACGATTTGGCTTGAATGCCTCCAATGGCGGCGATGTGCGAAAATTCAC
GGGCGTCAATATCGGCTCCAGCGAGTTGCGCAACTCATCGTCGGAGCTGT
GGGCCAGCGATCGCTTGCGGTTCTCCACCATCAGCGTGGAGCTAGAACGC
TTCGAGTTGGAGGTGGTGGCCCGCTCCTCGTAGGGCGCCTCCGTGTCCAG
CGAGGAGGTGCATCCGCGATTCGAGATCC

BS10239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3920-PA 1056 l(2)k16918-RA 194..1056 879..17 4315 100 Minus
CG3920-PB 1206 l(2)k16918-RB 344..1206 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1412..2274 879..17 4315 100 Minus
Reph-RA 3750 CG3920-RA 458..1320 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808241 735..17 3595 100 Minus
2L 23513712 2L 3807316..3807461 879..734 730 100 Minus
Blast to na_te.dros performed 2015-02-10 17:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1158 238..137 152 62.1 Minus

BS10239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:48 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PA 194..1056 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:29 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 344..1206 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:35 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RA 458..1323 13..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:07 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RA 458..1323 13..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:07 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3807316..3807461 734..879 100 -> Minus
2L 3807525..3808244 13..733 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:35 Download gff for BS10239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3807316..3807461 734..879 100 -> Minus
arm_2L 3807525..3808244 13..733 99   Minus

BS10239.5prime Sequence

884 bp (789 high quality bases) assembled on 2006-04-19

> BS10239.5prime
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCG
GCAACGAGAATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAG
ATGAGCAACAGCAGCCACCACATTTACCAGCCGC

BS10239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3920-PB 1206 l(2)k16918-RB 1..868 17..884 4340 100 Plus
CG3920-PA 1056 l(2)k16918-RA 1..718 167..884 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1068..1936 16..884 4345 100 Plus
Reph-RA 3750 CG3920-RA 187..982 89..884 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3807903 504..884 1905 100 Plus
2L 23513712 2L 3807133..3807461 177..505 1645 100 Plus
2L 23513712 2L 3806967..3807058 87..178 460 100 Plus
2L 23513712 2L 3806749..3806821 16..88 365 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:26:28 has no hits.

BS10239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:49 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:31 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:17 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1068..1936 16..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:11 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1068..1936 16..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:11 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3807133..3807461 177..505 100 -> Plus
2L 3807525..3807903 506..884 100   Plus
2L 3806749..3806821 16..88 100 -> Plus
2L 3806969..3807056 89..176 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:17 Download gff for BS10239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3806749..3806821 16..88 100 -> Plus
arm_2L 3806969..3807056 89..176 100 -> Plus
arm_2L 3807133..3807461 177..505 100 -> Plus
arm_2L 3807525..3807903 506..884 100   Plus

BS10239.complete Sequence

1238 bp (1238 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638831

> BS10239.complete
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCG
GCAACGAGAATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAG
ATGAGCAACAGCAGCCACCACATTTACCAGCCGCAGCCGAAATATAGTTT
CCACTACAACAGCTCGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATA
TGGAGGTGCGTTCGGTCAGTCCGCCGGCGAAACTGTTCCACTGCGCCATA
TCGCCCAGGCGGCGACCCAGTAACAATGCCAGTGGTGCAGCCGGGGGCGC
CACAACAATATCACCATCGTCAGCATCATCATCATCAGGCACAACAACGA
CACACAATGCTGCCAATTCCGCCGGAAATGCCGCTAACGTCACCGCCGTC
GCCACCCAGAGACTGCAGCGACCGCATCGGCCGTGTTTAGATTTTGATAA
GATGCAGCAGGTTAGTCTCTAAAAGCTTTCTAGACCAT

BS10239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 1206 CG3920-PB 1..1206 17..1222 6030 100 Plus
Reph-RA 1056 CG3920-PA 1..1056 167..1222 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1068..2274 16..1222 6035 100 Plus
Reph-RA 3750 CG3920-RA 187..1320 89..1222 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808241 504..1222 3595 100 Plus
2L 23513712 2L 3807133..3807461 177..505 1645 100 Plus
2L 23513712 2L 3806967..3807058 87..178 460 100 Plus
2L 23513712 2L 3806749..3806821 16..88 365 100 Plus
Blast to na_te.dros performed 2014-11-27 16:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1158 1001..1102 152 62.1 Plus

BS10239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:23 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:52 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1051..2260 16..1226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:20 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1069..2272 17..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:24 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1051..2260 16..1226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:24 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1069..2272 17..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:24 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3807133..3807461 177..505 100 -> Plus
2L 3806750..3806821 17..88 100 -> Plus
2L 3806969..3807056 89..176 100 -> Plus
2L 3807525..3808239 506..1220 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:20 Download gff for BS10239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3806750..3806821 17..88 100 -> Plus
arm_2L 3806969..3807056 89..176 100 -> Plus
arm_2L 3807133..3807461 177..505 100 -> Plus
arm_2L 3807525..3808239 506..1220 100   Plus

BS10239.pep Sequence

Translation from 16 to 1221

> BS10239.pep
MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD
METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG
QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE
NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP
LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS
GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS
RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP
SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS
L*

BS10239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-PB 401 CG3920-PB 1..401 1..401 2066 100 Plus
Reph-PA 351 CG3920-PA 1..351 51..401 1811 100 Plus