Clone Sequence Records
BS10240.complete Sequence
1832 bp assembled on 2009-12-07
GenBank Submission: KX805748
> BS10240.complete
GAAGTTATCAGTCGACATGCCGGAGAAGCTGTTGAAAATCACCTACCAGG
GCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAG
AATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCG
CCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAG
ATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAG
TGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGA
GCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTT
CTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGAT
GGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTG
CAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTG
AGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGAT
GCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAG
GGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAAC
CCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGA
GTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAAC
AACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAA
CTGAAAGTCCTCCACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGCT
GAATCCGAGGCCAAACCAACTGAGCCGAAGAAGGTTAACACTGATCAAAG
TGTCCCTAGAACCGAAGATCCAGTGACGACTCCACGTTCCACTCAGCCAA
CTACTCCAGTGATTAATCTGGATAACATTTCGCAGATTGTGCCACCCGAG
TACATGAGTGCTGGCATCGAAATCCTTAATAACTTCAGCGAAATGTTTTC
CAAGATTATCGATACCACTGAGGGCGGTGATTCGGGAATTTTTGCGCCCT
CAACGACTCCCAGTGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATCC
AGTGGCCAGTCGGGGGCATCCTCGGCCAACCAGTCAGCTGTTCCCTCTGC
CGCTCCATCGGCTAATCAGTCTAATGTCCCATCTGCTAACCAGTCGGCCA
CTCCATCAATTTCTGGTTCGATCCCTGATGCTCAGCTTGAGACAGAGCCC
CTGAATCCTAAGCCATCGGAAACCACCACCGAAACAGAGCAGGAAAGACG
CCGTTCAGACAGCTTGGATCCAGAGTGGCAGCTTATTGACAATGCATACT
CTGCAAACAATAGTAACTTGATCAATCTGGACACAACCAATCCCACTGCT
GCTCCTCAGGAGCCGGTGCGTGATTTTGGTCAGCTGGGCGAACTATTGCG
TCAGCACATGAATGAGGAGGCTCGCGTGGAGCAGGCTTCGGCCAACACCC
AGACTGCTCAAGTTGATACGGTGAGTACATCGACCTCGACCACATCGGTG
ACCACCAATAGCGTCGGCACCTCCCCAGCAGCTCCCGACGACAAGCGCAC
GGTCCCCGTCTACCACACTGATGAAAGCATCAATAAATCGATCCATGCCA
TGATGGCCATGGGTTTCAGCAACGAGGGCGCCTGGCTAACCCAGCTCCTA
GAGTCGGTTCAGGGCAATATCTCAGCTGCCTTGGACGTAATGAACGTATC
GCAGAACCGCAACTAAAAGCTTTCTAGACCAT
BS10240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 1800 | CG10360-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
ref(2)P-RA | 1800 | CG10360-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 350..2150 | 17..1817 | 9005 | 100 | Plus |
ref(2)P-RA | 2305 | CG10360-RA | 350..2150 | 17..1817 | 9005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19543619..19545101 | 188..1670 | 7415 | 100 | Plus |
2L | 23513712 | 2L | 19542817..19542988 | 17..188 | 860 | 100 | Plus |
2L | 23513712 | 2L | 19545156..19545303 | 1670..1817 | 740 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1921..1976 | 693..751 | 116 | 71.2 | Plus |
BS10240.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:10 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RB | 178..1975 | 17..1814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:13 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 350..2147 | 17..1814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:28 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RB | 178..1975 | 17..1814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:37 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 350..2147 | 17..1814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:37 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19542817..19542988 | 17..188 | 100 | -> | Plus |
2L | 19543620..19545101 | 189..1670 | 100 | -> | Plus |
2L | 19545157..19545300 | 1671..1814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:13 Download gff for
BS10240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19542817..19542988 | 17..188 | 100 | -> | Plus |
arm_2L | 19543620..19545101 | 189..1670 | 100 | -> | Plus |
arm_2L | 19545157..19545300 | 1671..1814 | 100 | | Plus |
BS10240.3prime Sequence
955 bp (737 high quality bases) assembled on 2006-04-19
> BS10240.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGGTTCTGCGATACGTTCATTACGTCC
AAGGCAGCTGAGATATTGCCCTGAACCGACTCTAGGAGCTGGGTTAGCCA
GGCGCCCTCGTTGCTGAAACCCATGGCCATCATGGCATGGATCGATTTAT
TGATGCTTTCATCAGTGTGGTAGACGGGGACCGTGCGCTTGTCGTCGGGA
GCTGCTGGGGAGGTGCCGACGCTATTGGTGGTCACCGATGTGGTCGAGGT
CGATGTACTCACCGTATCAACTTGAGCAGTCTGGGTGTTGGCCGAAGCCT
GCTCCACGCGAGCCTCCTCATTCATGTGCTGACGCAATAGTTCGCCCAGC
TGACCAAAATCACGCACCGGCTCCTGAGGAGCAGCAGTGGGATTGGTTGT
GTCCAGATTGATCAAGTTACTATTGTTTGCAGAGTATGCATTGTCAATAA
GCTGCCACTCTGGATCCAAGCTGTCTGAACGGCGTCTTTCCTGCTCTGTT
TCGGTGGTGGTTTCCGATGGCTTAGGATTCAGGGGCTCTGTCTCAAGCTG
AGCATCAGGGATCGAACCAGAAATTGATGGAGTGGCCGACTGGTTAGCAG
ATGGGACATTAGACTGATTAGCCGATGGAGCGGCAGAGGGAACAGCTGAC
TGGTTGGCCGAGGATGCCCCCGACTGGCCACTGGATTGACCCTGCTCTTC
TGGTTTCTTATTCTCAGCACTGGGAGTCGTTGAGGGCGCAAAAATTCCCG
AATCACCGCCCTCAGTGGTATCGATAATCTTGGAAAACATTTCGCTGAAG
TTATTAAGGATTTCGATGCCAGCACTCATGTACTCGGGTGGCACAATCTG
CGAAATGTTATCCAGATTAATCACTGGAGTAGTTGGCTGAGTGGAACGTG
GAGTCGTCACTGGATCTTCGGTTCTAGGGACACTTTGATCAGTGTTACCT
TTCTT
BS10240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10360-PA | 1800 | ref(2)P-RA | 870..1800 | 947..17 | 4655 | 100 | Minus |
CG10360-PB | 1800 | ref(2)P-RB | 870..1800 | 947..17 | 4655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 1211..2150 | 955..16 | 4670 | 99.8 | Minus |
ref(2)P-RA | 2305 | CG10360-RA | 1211..2150 | 955..16 | 4670 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19544309..19545101 | 955..163 | 3935 | 99.7 | Minus |
2L | 23513712 | 2L | 19545156..19545303 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:18:53 has no hits.
BS10240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:50 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PA | 862..1800 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:32 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PB | 862..1800 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:34 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 1211..2154 | 11..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:50 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 1211..2154 | 11..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:50 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19544309..19545101 | 163..955 | 99 | -> | Minus |
2L | 19545157..19545307 | 11..162 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:34 Download gff for
BS10240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19544309..19545101 | 163..955 | 99 | -> | Minus |
arm_2L | 19545157..19545307 | 11..162 | 98 | | Minus |
BS10240.5prime Sequence
910 bp (794 high quality bases) assembled on 2006-04-19
> BS10240.5prime
GAAGTTATCAGTCGACATGCCGGAGAAGCTGTTGAAAATCACCTACCAGG
GCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAG
AATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCG
CCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAG
ATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAG
TGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGA
GCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTT
CTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGAT
GGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTG
CAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTG
AGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGAT
GCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAG
GGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAAC
CCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGA
GTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAAC
AACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAA
CTGAAAGTCCTCCACAAGCTGAGCCCNACTGTACCGCTGAAAAGGCAGCT
GAATCCGAGGCCAAACAACTGAGCCGAAGAAGGTAACACTGATCAAGTGT
CCTAGAACCG
BS10240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10360-PA | 1800 | ref(2)P-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG10360-PB | 1800 | ref(2)P-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
CG10360-PA | 1800 | ref(2)P-RA | 816..850 | 832..866 | 175 | 100 | Plus |
CG10360-PB | 1800 | ref(2)P-RB | 816..850 | 832..866 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 350..1247 | 17..910 | 4345 | 99.3 | Plus |
ref(2)P-RA | 2305 | CG10360-RA | 350..1247 | 17..910 | 4345 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19543619..19544329 | 188..896 | 3384 | 99 | Plus |
2L | 23513712 | 2L | 19542817..19542988 | 17..188 | 860 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1921..1976 | 693..751 | 116 | 71.2 | Plus |
BS10240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:51 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PA | 1..898 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:34 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PB | 1..898 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:54 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 350..1247 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:01 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 350..1247 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:01 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19542817..19542988 | 17..188 | 100 | -> | Plus |
2L | 19543620..19544345 | 189..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:54 Download gff for
BS10240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19542817..19542988 | 17..188 | 100 | -> | Plus |
arm_2L | 19543620..19544345 | 189..910 | 99 | | Plus |
BS10240.pep Sequence
Translation from 16 to 1815
> BS10240.pep
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRN*
BS10240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-PB | 599 | CG10360-PB | 1..599 | 1..599 | 3119 | 100 | Plus |
ref(2)P-PA | 599 | CG10360-PA | 1..599 | 1..599 | 3119 | 100 | Plus |
Muc68D-PB | 1514 | CG6004-PB | 521..904 | 211..582 | 164 | 21.7 | Plus |