Clone BS10240 Report

Search the DGRC for BS10240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptref(2)P-RA
Protein status:BS10240.pep: full length peptide match
Sequenced Size:1832

Clone Sequence Records

BS10240.complete Sequence

1832 bp assembled on 2009-12-07

GenBank Submission: KX805748

> BS10240.complete
GAAGTTATCAGTCGACATGCCGGAGAAGCTGTTGAAAATCACCTACCAGG
GCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAG
AATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCG
CCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAG
ATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAG
TGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGA
GCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTT
CTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGAT
GGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTG
CAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTG
AGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGAT
GCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAG
GGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAAC
CCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGA
GTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAAC
AACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAA
CTGAAAGTCCTCCACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGCT
GAATCCGAGGCCAAACCAACTGAGCCGAAGAAGGTTAACACTGATCAAAG
TGTCCCTAGAACCGAAGATCCAGTGACGACTCCACGTTCCACTCAGCCAA
CTACTCCAGTGATTAATCTGGATAACATTTCGCAGATTGTGCCACCCGAG
TACATGAGTGCTGGCATCGAAATCCTTAATAACTTCAGCGAAATGTTTTC
CAAGATTATCGATACCACTGAGGGCGGTGATTCGGGAATTTTTGCGCCCT
CAACGACTCCCAGTGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATCC
AGTGGCCAGTCGGGGGCATCCTCGGCCAACCAGTCAGCTGTTCCCTCTGC
CGCTCCATCGGCTAATCAGTCTAATGTCCCATCTGCTAACCAGTCGGCCA
CTCCATCAATTTCTGGTTCGATCCCTGATGCTCAGCTTGAGACAGAGCCC
CTGAATCCTAAGCCATCGGAAACCACCACCGAAACAGAGCAGGAAAGACG
CCGTTCAGACAGCTTGGATCCAGAGTGGCAGCTTATTGACAATGCATACT
CTGCAAACAATAGTAACTTGATCAATCTGGACACAACCAATCCCACTGCT
GCTCCTCAGGAGCCGGTGCGTGATTTTGGTCAGCTGGGCGAACTATTGCG
TCAGCACATGAATGAGGAGGCTCGCGTGGAGCAGGCTTCGGCCAACACCC
AGACTGCTCAAGTTGATACGGTGAGTACATCGACCTCGACCACATCGGTG
ACCACCAATAGCGTCGGCACCTCCCCAGCAGCTCCCGACGACAAGCGCAC
GGTCCCCGTCTACCACACTGATGAAAGCATCAATAAATCGATCCATGCCA
TGATGGCCATGGGTTTCAGCAACGAGGGCGCCTGGCTAACCCAGCTCCTA
GAGTCGGTTCAGGGCAATATCTCAGCTGCCTTGGACGTAATGAACGTATC
GCAGAACCGCAACTAAAAGCTTTCTAGACCAT

BS10240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 1800 CG10360-PB 1..1800 17..1816 9000 100 Plus
ref(2)P-RA 1800 CG10360-PA 1..1800 17..1816 9000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 350..2150 17..1817 9005 100 Plus
ref(2)P-RA 2305 CG10360-RA 350..2150 17..1817 9005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19545101 188..1670 7415 100 Plus
2L 23513712 2L 19542817..19542988 17..188 860 100 Plus
2L 23513712 2L 19545156..19545303 1670..1817 740 100 Plus
Blast to na_te.dros performed 2014-11-28 02:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 1921..1976 693..751 116 71.2 Plus

BS10240.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:10 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 178..1975 17..1814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:13 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 350..2147 17..1814 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:28 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 178..1975 17..1814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:37 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 350..2147 17..1814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:37 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542817..19542988 17..188 100 -> Plus
2L 19543620..19545101 189..1670 100 -> Plus
2L 19545157..19545300 1671..1814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:13 Download gff for BS10240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19542817..19542988 17..188 100 -> Plus
arm_2L 19543620..19545101 189..1670 100 -> Plus
arm_2L 19545157..19545300 1671..1814 100   Plus

BS10240.3prime Sequence

955 bp (737 high quality bases) assembled on 2006-04-19

> BS10240.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGGTTCTGCGATACGTTCATTACGTCC
AAGGCAGCTGAGATATTGCCCTGAACCGACTCTAGGAGCTGGGTTAGCCA
GGCGCCCTCGTTGCTGAAACCCATGGCCATCATGGCATGGATCGATTTAT
TGATGCTTTCATCAGTGTGGTAGACGGGGACCGTGCGCTTGTCGTCGGGA
GCTGCTGGGGAGGTGCCGACGCTATTGGTGGTCACCGATGTGGTCGAGGT
CGATGTACTCACCGTATCAACTTGAGCAGTCTGGGTGTTGGCCGAAGCCT
GCTCCACGCGAGCCTCCTCATTCATGTGCTGACGCAATAGTTCGCCCAGC
TGACCAAAATCACGCACCGGCTCCTGAGGAGCAGCAGTGGGATTGGTTGT
GTCCAGATTGATCAAGTTACTATTGTTTGCAGAGTATGCATTGTCAATAA
GCTGCCACTCTGGATCCAAGCTGTCTGAACGGCGTCTTTCCTGCTCTGTT
TCGGTGGTGGTTTCCGATGGCTTAGGATTCAGGGGCTCTGTCTCAAGCTG
AGCATCAGGGATCGAACCAGAAATTGATGGAGTGGCCGACTGGTTAGCAG
ATGGGACATTAGACTGATTAGCCGATGGAGCGGCAGAGGGAACAGCTGAC
TGGTTGGCCGAGGATGCCCCCGACTGGCCACTGGATTGACCCTGCTCTTC
TGGTTTCTTATTCTCAGCACTGGGAGTCGTTGAGGGCGCAAAAATTCCCG
AATCACCGCCCTCAGTGGTATCGATAATCTTGGAAAACATTTCGCTGAAG
TTATTAAGGATTTCGATGCCAGCACTCATGTACTCGGGTGGCACAATCTG
CGAAATGTTATCCAGATTAATCACTGGAGTAGTTGGCTGAGTGGAACGTG
GAGTCGTCACTGGATCTTCGGTTCTAGGGACACTTTGATCAGTGTTACCT
TTCTT

BS10240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10360-PA 1800 ref(2)P-RA 870..1800 947..17 4655 100 Minus
CG10360-PB 1800 ref(2)P-RB 870..1800 947..17 4655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 1211..2150 955..16 4670 99.8 Minus
ref(2)P-RA 2305 CG10360-RA 1211..2150 955..16 4670 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19544309..19545101 955..163 3935 99.7 Minus
2L 23513712 2L 19545156..19545303 163..16 740 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:18:53 has no hits.

BS10240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:50 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PA 862..1800 17..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:32 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PB 862..1800 17..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:34 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1211..2154 11..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:50 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1211..2154 11..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:50 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19544309..19545101 163..955 99 -> Minus
2L 19545157..19545307 11..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:34 Download gff for BS10240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19544309..19545101 163..955 99 -> Minus
arm_2L 19545157..19545307 11..162 98   Minus

BS10240.5prime Sequence

910 bp (794 high quality bases) assembled on 2006-04-19

> BS10240.5prime
GAAGTTATCAGTCGACATGCCGGAGAAGCTGTTGAAAATCACCTACCAGG
GCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAG
AATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCG
CCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAG
ATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAG
TGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGA
GCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTT
CTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGAT
GGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTG
CAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTG
AGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGAT
GCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAG
GGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAAC
CCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGA
GTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAAC
AACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAA
CTGAAAGTCCTCCACAAGCTGAGCCCNACTGTACCGCTGAAAAGGCAGCT
GAATCCGAGGCCAAACAACTGAGCCGAAGAAGGTAACACTGATCAAGTGT
CCTAGAACCG

BS10240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10360-PA 1800 ref(2)P-RA 1..810 17..826 4050 100 Plus
CG10360-PB 1800 ref(2)P-RB 1..810 17..826 4050 100 Plus
CG10360-PA 1800 ref(2)P-RA 816..850 832..866 175 100 Plus
CG10360-PB 1800 ref(2)P-RB 816..850 832..866 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 350..1247 17..910 4345 99.3 Plus
ref(2)P-RA 2305 CG10360-RA 350..1247 17..910 4345 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19544329 188..896 3384 99 Plus
2L 23513712 2L 19542817..19542988 17..188 860 100 Plus
Blast to na_te.dros performed 2015-02-11 18:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 1921..1976 693..751 116 71.2 Plus

BS10240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:51 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PA 1..898 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:34 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PB 1..898 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:54 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 350..1247 17..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:01 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 350..1247 17..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:01 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19542817..19542988 17..188 100 -> Plus
2L 19543620..19544345 189..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:54 Download gff for BS10240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19542817..19542988 17..188 100 -> Plus
arm_2L 19543620..19544345 189..910 99   Plus

BS10240.pep Sequence

Translation from 16 to 1815

> BS10240.pep
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRN*

BS10240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-PB 599 CG10360-PB 1..599 1..599 3119 100 Plus
ref(2)P-PA 599 CG10360-PA 1..599 1..599 3119 100 Plus
Muc68D-PB 1514 CG6004-PB 521..904 211..582 164 21.7 Plus